Ggra1716.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1716.t1
Unique NameGgra1716.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:451772..453205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008611513.1
Preferred namePCYOX1L
PFAMsNAD_binding_8,Prenylcys_lyase
Max annot lvl2759|Eukaryota
KEGG rclassRC00069,RC02012
KEGG koko:K05906
KEGG ReactionR09562
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0000096,GO:0000098,GO:0000323,GO:0001101,GO:0001735,GO:0002576,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006508,GO:0006520,GO:0006575,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006887,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008509,GO:0008555,GO:0009056,GO:0009057,GO:0009063,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0016020,GO:0016054,GO:0016192,GO:0016462,GO:0016491,GO:0016667,GO:0016670,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019637,GO:0019752,GO:0019941,GO:0022804,GO:0022857,GO:0023052,GO:0030141,GO:0030163,GO:0030327,GO:0030328,GO:0030329,GO:0031090,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032870,GO:0032940,GO:0032991,GO:0032994,GO:0033993,GO:0034220,GO:0034358,GO:0034361,GO:0034385,GO:0034774,GO:0042219,GO:0042221,GO:0042623,GO:0042626,GO:0043170,GO:0043225,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044273,GO:0044281,GO:0044282,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045338,GO:0046395,GO:0046903,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055085,GO:0055114,GO:0060205,GO:0065007,GO:0070013,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071944,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0099133,GO:0099503,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902476,GO:1990777
Evalue7.12e-62
EggNOG OGs2CMX8@1|root,2QSHJ@2759|Eukaryota
EC1.8.3.5,1.8.3.6
Descriptionprenylcysteine oxidase activity
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1716Ggra1716Gracilaria gracilis GNS1m malegenetig00000050_pilon 451772..453205 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1716.t1.start1Ggra1716.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 451772..451774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1716.t1.CDS1Ggra1716.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 451772..453205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1716.t1.exon1Ggra1716.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 451772..453205 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1716.t1.stop1Ggra1716.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 453203..453205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1716.t1Ggra1716.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 451772..453205 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1716.t1 ID=Ggra1716.t1|Name=Ggra1716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MLWAAPNLRRTMLSLTLVALLSQLLNFVHSSESLANHVCVIGAGMSGSSA
AFFLSQLPSISITVFEKQARVGGRIEVLQLPNTPPIEAGASIIAAENMLM
AYFVKMLNLTRYTKSFGTMGLWDGTSFVYRSHSSKTKTLYSMFRRYGSSI
LATKKHVRTLLDKYKKLYPEGGVSGTWNPHPNVESLLQQTGDLFNLTQVS
FAKEAEKLFGKLYIEEMVGAITRVNYGQDVHEMNGMSGAVALAGTGQDLW
AVKGGNYKVVEGLLKKSGAQIHLEMEIKRVDIENNHYTLSSSDRQWKCDA
VILAAPFELMSIELPHQIVNRMHKNRRFQLTVATFVRGSLNEDTFGPDPP
KSILSTNLVNDSFTAIGMAHDASDSEKPIFKVFSRMNLSSYHLERIFGNS
FEVLATYPWMAYPKFSPPEEFTSFDLDEHGVFIYTSPLESAGSAMEMSAV
SGANAAALVREKLGLLEEQHIEAKDEL*
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spliced messenger RNA

>Ggra1716.t1 ID=Ggra1716.t1|Name=Ggra1716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000050_pilon:451772..453205+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGGGCGGCACCAAACCTTCGTCGCACAATGCTTTCTCTGACACT
TGTTGCACTTTTGTCTCAGTTGTTAAACTTCGTTCACTCTTCTGAAAGTC
TTGCTAATCACGTATGTGTGATCGGCGCTGGCATGTCAGGCTCTTCGGCC
GCTTTCTTTCTTTCTCAGCTCCCATCGATATCTATCACGGTCTTCGAGAA
ACAAGCACGTGTTGGCGGTCGTATTGAAGTTCTTCAACTTCCTAACACCC
CTCCGATTGAAGCAGGAGCCTCAATCATAGCAGCAGAGAATATGCTCATG
GCTTATTTCGTGAAGATGTTGAATTTGACTAGATACACAAAGAGCTTTGG
CACTATGGGGCTCTGGGATGGAACATCCTTTGTATATCGCTCTCATTCTT
CTAAAACTAAAACTCTTTATTCAATGTTTCGCCGATATGGAAGTTCAATC
CTTGCCACCAAGAAACACGTTCGCACCCTTCTCGACAAGTACAAGAAGTT
GTATCCGGAGGGCGGGGTTAGTGGCACATGGAATCCTCATCCAAACGTTG
AGAGCCTCTTGCAACAAACAGGAGATCTATTCAATCTTACCCAAGTATCT
TTCGCCAAAGAAGCAGAAAAGTTATTTGGGAAGCTCTATATTGAAGAAAT
GGTTGGGGCCATTACTCGCGTGAACTACGGACAGGATGTCCATGAGATGA
ACGGAATGTCTGGTGCTGTGGCTTTGGCTGGCACTGGTCAAGATCTATGG
GCTGTCAAAGGTGGCAACTACAAGGTCGTTGAAGGCCTTCTGAAGAAGTC
TGGCGCACAAATACACTTAGAGATGGAAATTAAGAGGGTTGACATAGAGA
ATAACCATTACACACTGAGCAGTAGCGATCGACAATGGAAATGTGATGCA
GTCATACTTGCAGCCCCATTCGAACTGATGTCCATAGAGCTGCCTCATCA
AATTGTCAACCGAATGCACAAGAATAGGCGGTTTCAGCTCACGGTTGCTA
CTTTTGTGCGAGGAAGCTTGAACGAAGATACCTTTGGGCCAGATCCCCCG
AAATCGATTCTGAGCACCAACCTGGTGAACGATTCTTTCACAGCCATTGG
TATGGCTCACGATGCAAGTGATAGTGAGAAACCGATATTCAAAGTGTTTA
GCCGAATGAACCTATCAAGTTATCACCTCGAACGAATATTCGGAAATAGC
TTCGAAGTTCTGGCGACTTATCCGTGGATGGCATACCCAAAGTTCTCCCC
TCCAGAGGAGTTTACAAGTTTTGATTTGGACGAGCACGGGGTATTCATCT
ACACGTCTCCCTTGGAATCTGCCGGCTCTGCAATGGAGATGAGCGCTGTT
TCTGGTGCAAATGCTGCGGCGCTAGTCAGAGAAAAGCTGGGGCTTCTGGA
AGAGCAGCATATTGAAGCAAAGGACGAACTTTGA
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protein sequence of Ggra1716.t1

>Ggra1716.t1 ID=Ggra1716.t1|Name=Ggra1716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MLWAAPNLRRTMLSLTLVALLSQLLNFVHSSESLANHVCVIGAGMSGSSA
AFFLSQLPSISITVFEKQARVGGRIEVLQLPNTPPIEAGASIIAAENMLM
AYFVKMLNLTRYTKSFGTMGLWDGTSFVYRSHSSKTKTLYSMFRRYGSSI
LATKKHVRTLLDKYKKLYPEGGVSGTWNPHPNVESLLQQTGDLFNLTQVS
FAKEAEKLFGKLYIEEMVGAITRVNYGQDVHEMNGMSGAVALAGTGQDLW
AVKGGNYKVVEGLLKKSGAQIHLEMEIKRVDIENNHYTLSSSDRQWKCDA
VILAAPFELMSIELPHQIVNRMHKNRRFQLTVATFVRGSLNEDTFGPDPP
KSILSTNLVNDSFTAIGMAHDASDSEKPIFKVFSRMNLSSYHLERIFGNS
FEVLATYPWMAYPKFSPPEEFTSFDLDEHGVFIYTSPLESAGSAMEMSAV
SGANAAALVREKLGLLEEQHIEAKDEL*
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mRNA from alignment at tig00000050_pilon:451772..453205+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1716.t1 ID=Ggra1716.t1|Name=Ggra1716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000050_pilon:451772..453205+ (Gracilaria gracilis GNS1m male)
ATGCTTTGGGCGGCACCAAACCTTCGTCGCACAATGCTTTCTCTGACACT
TGTTGCACTTTTGTCTCAGTTGTTAAACTTCGTTCACTCTTCTGAAAGTC
TTGCTAATCACGTATGTGTGATCGGCGCTGGCATGTCAGGCTCTTCGGCC
GCTTTCTTTCTTTCTCAGCTCCCATCGATATCTATCACGGTCTTCGAGAA
ACAAGCACGTGTTGGCGGTCGTATTGAAGTTCTTCAACTTCCTAACACCC
CTCCGATTGAAGCAGGAGCCTCAATCATAGCAGCAGAGAATATGCTCATG
GCTTATTTCGTGAAGATGTTGAATTTGACTAGATACACAAAGAGCTTTGG
CACTATGGGGCTCTGGGATGGAACATCCTTTGTATATCGCTCTCATTCTT
CTAAAACTAAAACTCTTTATTCAATGTTTCGCCGATATGGAAGTTCAATC
CTTGCCACCAAGAAACACGTTCGCACCCTTCTCGACAAGTACAAGAAGTT
GTATCCGGAGGGCGGGGTTAGTGGCACATGGAATCCTCATCCAAACGTTG
AGAGCCTCTTGCAACAAACAGGAGATCTATTCAATCTTACCCAAGTATCT
TTCGCCAAAGAAGCAGAAAAGTTATTTGGGAAGCTCTATATTGAAGAAAT
GGTTGGGGCCATTACTCGCGTGAACTACGGACAGGATGTCCATGAGATGA
ACGGAATGTCTGGTGCTGTGGCTTTGGCTGGCACTGGTCAAGATCTATGG
GCTGTCAAAGGTGGCAACTACAAGGTCGTTGAAGGCCTTCTGAAGAAGTC
TGGCGCACAAATACACTTAGAGATGGAAATTAAGAGGGTTGACATAGAGA
ATAACCATTACACACTGAGCAGTAGCGATCGACAATGGAAATGTGATGCA
GTCATACTTGCAGCCCCATTCGAACTGATGTCCATAGAGCTGCCTCATCA
AATTGTCAACCGAATGCACAAGAATAGGCGGTTTCAGCTCACGGTTGCTA
CTTTTGTGCGAGGAAGCTTGAACGAAGATACCTTTGGGCCAGATCCCCCG
AAATCGATTCTGAGCACCAACCTGGTGAACGATTCTTTCACAGCCATTGG
TATGGCTCACGATGCAAGTGATAGTGAGAAACCGATATTCAAAGTGTTTA
GCCGAATGAACCTATCAAGTTATCACCTCGAACGAATATTCGGAAATAGC
TTCGAAGTTCTGGCGACTTATCCGTGGATGGCATACCCAAAGTTCTCCCC
TCCAGAGGAGTTTACAAGTTTTGATTTGGACGAGCACGGGGTATTCATCT
ACACGTCTCCCTTGGAATCTGCCGGCTCTGCAATGGAGATGAGCGCTGTT
TCTGGTGCAAATGCTGCGGCGCTAGTCAGAGAAAAGCTGGGGCTTCTGGA
AGAGCAGCATATTGAAGCAAAGGACGAACTTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:451772..453205+

>Ggra1716.t1 ID=Ggra1716.t1|Name=Ggra1716.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000050_pilon:451772..453205+ (Gracilaria gracilis GNS1m male)
ATGCTTTGGGCGGCACCAAACCTTCGTCGCACAATGCTTTCTCTGACACT
TGTTGCACTTTTGTCTCAGTTGTTAAACTTCGTTCACTCTTCTGAAAGTC
TTGCTAATCACGTATGTGTGATCGGCGCTGGCATGTCAGGCTCTTCGGCC
GCTTTCTTTCTTTCTCAGCTCCCATCGATATCTATCACGGTCTTCGAGAA
ACAAGCACGTGTTGGCGGTCGTATTGAAGTTCTTCAACTTCCTAACACCC
CTCCGATTGAAGCAGGAGCCTCAATCATAGCAGCAGAGAATATGCTCATG
GCTTATTTCGTGAAGATGTTGAATTTGACTAGATACACAAAGAGCTTTGG
CACTATGGGGCTCTGGGATGGAACATCCTTTGTATATCGCTCTCATTCTT
CTAAAACTAAAACTCTTTATTCAATGTTTCGCCGATATGGAAGTTCAATC
CTTGCCACCAAGAAACACGTTCGCACCCTTCTCGACAAGTACAAGAAGTT
GTATCCGGAGGGCGGGGTTAGTGGCACATGGAATCCTCATCCAAACGTTG
AGAGCCTCTTGCAACAAACAGGAGATCTATTCAATCTTACCCAAGTATCT
TTCGCCAAAGAAGCAGAAAAGTTATTTGGGAAGCTCTATATTGAAGAAAT
GGTTGGGGCCATTACTCGCGTGAACTACGGACAGGATGTCCATGAGATGA
ACGGAATGTCTGGTGCTGTGGCTTTGGCTGGCACTGGTCAAGATCTATGG
GCTGTCAAAGGTGGCAACTACAAGGTCGTTGAAGGCCTTCTGAAGAAGTC
TGGCGCACAAATACACTTAGAGATGGAAATTAAGAGGGTTGACATAGAGA
ATAACCATTACACACTGAGCAGTAGCGATCGACAATGGAAATGTGATGCA
GTCATACTTGCAGCCCCATTCGAACTGATGTCCATAGAGCTGCCTCATCA
AATTGTCAACCGAATGCACAAGAATAGGCGGTTTCAGCTCACGGTTGCTA
CTTTTGTGCGAGGAAGCTTGAACGAAGATACCTTTGGGCCAGATCCCCCG
AAATCGATTCTGAGCACCAACCTGGTGAACGATTCTTTCACAGCCATTGG
TATGGCTCACGATGCAAGTGATAGTGAGAAACCGATATTCAAAGTGTTTA
GCCGAATGAACCTATCAAGTTATCACCTCGAACGAATATTCGGAAATAGC
TTCGAAGTTCTGGCGACTTATCCGTGGATGGCATACCCAAAGTTCTCCCC
TCCAGAGGAGTTTACAAGTTTTGATTTGGACGAGCACGGGGTATTCATCT
ACACGTCTCCCTTGGAATCTGCCGGCTCTGCAATGGAGATGAGCGCTGTT
TCTGGTGCAAATGCTGCGGCGCTAGTCAGAGAAAAGCTGGGGCTTCTGGA
AGAGCAGCATATTGAAGCAAAGGACGAACTTTGA
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