Ggra1715.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1715.t1
Unique NameGgra1715.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:450450..451451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX38320
PFAMsFe_bilin_red
Max annot lvl2759|Eukaryota
Evalue7.2e-81
EggNOG OGs28II3@1|root,2S2CU@2759|Eukaryota
DescriptionFerredoxin-dependent bilin reductase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1715Ggra1715Gracilaria gracilis GNS1m malegenetig00000050_pilon 450450..451451 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1715.t1.stop1Ggra1715.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 450450..450452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1715.t1.CDS1Ggra1715.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 450450..451451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1715.t1.exon1Ggra1715.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 450450..451451 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1715.t1.start1Ggra1715.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 451449..451451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1715.t1Ggra1715.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 450450..451451 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1715.t1 ID=Ggra1715.t1|Name=Ggra1715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MMDAEHSHLDVDSSGPPIVDRCDFEMAGFVGSPLSISRQIYGIPVQSKSS
LRPRLNYGLARIRASAAGTKQVLSSKRASKLPWDGTISDCGCPLFFMPFL
EHQLSVMKELPQLRDLPFDEHLSYQTSTKRSARIESWAWQTKHFRKIRAT
YIDAGYNAQVFNSVWYPNPMYEHPLLGIDFLSFGKKKVICIMDFQPLTQE
KDYLEKYCARLKGIKEQYDGLSGTMSDRFYDEAQFFSRQLVFAKFDHHEP
ISTQLLPAFKQYVAKYVEMILDAVPDESESGINRVLQLHKDYDQYSADRD
PAVGLFGTYWGKEWAQQFTHEFLFTDSEPKPEE*
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spliced messenger RNA

>Ggra1715.t1 ID=Ggra1715.t1|Name=Ggra1715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000050_pilon:450450..451451- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGATGCCGAGCACTCGCATCTTGACGTCGACTCCAGCGGCCCCCC
AATCGTCGACCGTTGCGATTTTGAAATGGCTGGCTTCGTGGGTTCTCCCC
TCTCTATCTCGCGACAGATATACGGCATTCCAGTACAAAGCAAATCGAGC
TTAAGACCAAGATTAAATTATGGACTTGCTCGCATTCGAGCTAGCGCTGC
GGGAACCAAGCAAGTGTTGAGCTCAAAAAGAGCATCTAAACTACCCTGGG
ACGGCACAATCTCAGATTGCGGTTGCCCCCTTTTCTTCATGCCCTTTCTG
GAGCATCAGTTATCTGTCATGAAGGAATTGCCGCAACTCCGTGACCTTCC
GTTCGATGAGCACCTTTCTTATCAAACATCAACCAAACGCTCAGCGCGAA
TAGAGAGTTGGGCATGGCAAACCAAACACTTTCGTAAGATTCGTGCAACT
TATATTGACGCAGGATATAACGCCCAGGTATTCAATTCGGTCTGGTATCC
GAATCCAATGTATGAACATCCTCTCCTTGGCATTGACTTTTTGTCTTTTG
GAAAGAAGAAGGTGATCTGCATTATGGACTTTCAACCGTTGACTCAAGAG
AAAGATTATTTGGAAAAGTACTGCGCAAGATTGAAGGGAATTAAGGAGCA
GTACGACGGGCTGAGTGGAACAATGTCCGACCGCTTTTATGACGAAGCGC
AGTTCTTCTCAAGACAACTGGTTTTTGCCAAGTTTGATCATCATGAGCCG
ATTTCTACACAGTTGCTCCCCGCGTTCAAACAGTACGTAGCAAAATATGT
CGAAATGATCCTTGATGCTGTGCCGGACGAAAGCGAGAGCGGTATTAATC
GCGTGCTGCAGCTCCACAAAGACTACGATCAATATTCTGCAGATCGAGAC
CCCGCTGTTGGCTTGTTTGGGACGTACTGGGGCAAGGAGTGGGCCCAACA
GTTTACTCATGAATTTCTTTTCACTGATTCTGAGCCTAAGCCGGAGGAGT
AG
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protein sequence of Ggra1715.t1

>Ggra1715.t1 ID=Ggra1715.t1|Name=Ggra1715.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MMDAEHSHLDVDSSGPPIVDRCDFEMAGFVGSPLSISRQIYGIPVQSKSS
LRPRLNYGLARIRASAAGTKQVLSSKRASKLPWDGTISDCGCPLFFMPFL
EHQLSVMKELPQLRDLPFDEHLSYQTSTKRSARIESWAWQTKHFRKIRAT
YIDAGYNAQVFNSVWYPNPMYEHPLLGIDFLSFGKKKVICIMDFQPLTQE
KDYLEKYCARLKGIKEQYDGLSGTMSDRFYDEAQFFSRQLVFAKFDHHEP
ISTQLLPAFKQYVAKYVEMILDAVPDESESGINRVLQLHKDYDQYSADRD
PAVGLFGTYWGKEWAQQFTHEFLFTDSEPKPEE*
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mRNA from alignment at tig00000050_pilon:450450..451451-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1715.t1 ID=Ggra1715.t1|Name=Ggra1715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000050_pilon:450450..451451- (Gracilaria gracilis GNS1m male)
ATGATGGATGCCGAGCACTCGCATCTTGACGTCGACTCCAGCGGCCCCCC
AATCGTCGACCGTTGCGATTTTGAAATGGCTGGCTTCGTGGGTTCTCCCC
TCTCTATCTCGCGACAGATATACGGCATTCCAGTACAAAGCAAATCGAGC
TTAAGACCAAGATTAAATTATGGACTTGCTCGCATTCGAGCTAGCGCTGC
GGGAACCAAGCAAGTGTTGAGCTCAAAAAGAGCATCTAAACTACCCTGGG
ACGGCACAATCTCAGATTGCGGTTGCCCCCTTTTCTTCATGCCCTTTCTG
GAGCATCAGTTATCTGTCATGAAGGAATTGCCGCAACTCCGTGACCTTCC
GTTCGATGAGCACCTTTCTTATCAAACATCAACCAAACGCTCAGCGCGAA
TAGAGAGTTGGGCATGGCAAACCAAACACTTTCGTAAGATTCGTGCAACT
TATATTGACGCAGGATATAACGCCCAGGTATTCAATTCGGTCTGGTATCC
GAATCCAATGTATGAACATCCTCTCCTTGGCATTGACTTTTTGTCTTTTG
GAAAGAAGAAGGTGATCTGCATTATGGACTTTCAACCGTTGACTCAAGAG
AAAGATTATTTGGAAAAGTACTGCGCAAGATTGAAGGGAATTAAGGAGCA
GTACGACGGGCTGAGTGGAACAATGTCCGACCGCTTTTATGACGAAGCGC
AGTTCTTCTCAAGACAACTGGTTTTTGCCAAGTTTGATCATCATGAGCCG
ATTTCTACACAGTTGCTCCCCGCGTTCAAACAGTACGTAGCAAAATATGT
CGAAATGATCCTTGATGCTGTGCCGGACGAAAGCGAGAGCGGTATTAATC
GCGTGCTGCAGCTCCACAAAGACTACGATCAATATTCTGCAGATCGAGAC
CCCGCTGTTGGCTTGTTTGGGACGTACTGGGGCAAGGAGTGGGCCCAACA
GTTTACTCATGAATTTCTTTTCACTGATTCTGAGCCTAAGCCGGAGGAGT
AG
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Coding sequence (CDS) from alignment at tig00000050_pilon:450450..451451-

>Ggra1715.t1 ID=Ggra1715.t1|Name=Ggra1715.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000050_pilon:450450..451451- (Gracilaria gracilis GNS1m male)
ATGATGGATGCCGAGCACTCGCATCTTGACGTCGACTCCAGCGGCCCCCC
AATCGTCGACCGTTGCGATTTTGAAATGGCTGGCTTCGTGGGTTCTCCCC
TCTCTATCTCGCGACAGATATACGGCATTCCAGTACAAAGCAAATCGAGC
TTAAGACCAAGATTAAATTATGGACTTGCTCGCATTCGAGCTAGCGCTGC
GGGAACCAAGCAAGTGTTGAGCTCAAAAAGAGCATCTAAACTACCCTGGG
ACGGCACAATCTCAGATTGCGGTTGCCCCCTTTTCTTCATGCCCTTTCTG
GAGCATCAGTTATCTGTCATGAAGGAATTGCCGCAACTCCGTGACCTTCC
GTTCGATGAGCACCTTTCTTATCAAACATCAACCAAACGCTCAGCGCGAA
TAGAGAGTTGGGCATGGCAAACCAAACACTTTCGTAAGATTCGTGCAACT
TATATTGACGCAGGATATAACGCCCAGGTATTCAATTCGGTCTGGTATCC
GAATCCAATGTATGAACATCCTCTCCTTGGCATTGACTTTTTGTCTTTTG
GAAAGAAGAAGGTGATCTGCATTATGGACTTTCAACCGTTGACTCAAGAG
AAAGATTATTTGGAAAAGTACTGCGCAAGATTGAAGGGAATTAAGGAGCA
GTACGACGGGCTGAGTGGAACAATGTCCGACCGCTTTTATGACGAAGCGC
AGTTCTTCTCAAGACAACTGGTTTTTGCCAAGTTTGATCATCATGAGCCG
ATTTCTACACAGTTGCTCCCCGCGTTCAAACAGTACGTAGCAAAATATGT
CGAAATGATCCTTGATGCTGTGCCGGACGAAAGCGAGAGCGGTATTAATC
GCGTGCTGCAGCTCCACAAAGACTACGATCAATATTCTGCAGATCGAGAC
CCCGCTGTTGGCTTGTTTGGGACGTACTGGGGCAAGGAGTGGGCCCAACA
GTTTACTCATGAATTTCTTTTCACTGATTCTGAGCCTAAGCCGGAGGAGT
AG
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