Ggra1713.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1713.t1
Unique NameGgra1713.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:439052..439954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1713Ggra1713Gracilaria gracilis GNS1m malegenetig00000050_pilon 439052..439954 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1713.t1.start1Ggra1713.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 439052..439054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1713.t1.CDS1Ggra1713.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 439052..439954 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1713.t1.exon1Ggra1713.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 439052..439954 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1713.t1.stop1Ggra1713.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 439952..439954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1713.t1Ggra1713.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 439052..439954 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1713.t1 ID=Ggra1713.t1|Name=Ggra1713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=301bp
MTSSFDHMLPPTERMPYTIITPQYSPHTTVAISLRHFEKQSKHQAEQEYD
DEHGLLPDSTADDDLSVDMHERTIQKKKRKVRSAIVSRRKNAIYEKKLEE
ELHHRDQVNADLRARLALFHDVLGNIREKISALERSVHNKQQQQAHAHMA
SGLGAAAAVSQLAPHVLRRTRPAINTAASMFPAAAAAQHLLAQQQHQQHQ
QQQQQQQQTQQNMFFLQHEDRLVEDVLNASQAKQLSAFQDVDFSSECSDR
QISPVIPTAPERCVPSVAEVNAMGALSADDAFGVEQRLGAAAMLAPSFVV
*
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spliced messenger RNA

>Ggra1713.t1 ID=Ggra1713.t1|Name=Ggra1713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000050_pilon:439052..439954+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCCTCATTCGATCATATGCTGCCGCCCACAGAGCGCATGCCCTA
CACCATCATCACGCCGCAGTACTCGCCGCACACCACCGTGGCCATCTCGC
TGCGCCACTTTGAGAAGCAGTCCAagcaccaggccgagcaggagtacgac
gacgagcacgggcTGCTGCCGGACTCCACCGCCGACGATGATCTCTCCGT
CGACATGCACGAGCGCACCATCCAGAAGAAGAAGCGCAAGGTGCGCTCCG
CCATCGTGTCGCGCCGCAAGAACGCCATCTACGAGAAGAAGCTCGAGGAG
GAGCTGCACCACAGGGACCAGGTCAACGCCGACCTGCGCGCCAGACTGGC
GCTGTTCCACGACGTGCTGGGTAACATTCGCGAGAAGATTTCCGCTCTGG
AGCGCAGTGTGCACAACAAGCAGCAGCAGCAAGCGCACGCGCACATGGCG
TCCGGACTGGGCGCCGCCGCCGCCGTGTCGCAGCTGGCTCCGCATGTGCT
CAGAAGAACACGGCCCGCCATCAACACCGCCGCCTCCATGTTCCCCGCTG
CCGCTGCCGCCCAACACCTGTTGGCGcaacaacaacatcaacaacatcaa
caacaacaacaacaacaacagcaaacacaacaaaacaTGTTTTTTCTACA
ACACGAGGATCGTCTAGTTGAGGACGTGCTCAACGCCAGTCAGGCTAAGC
AACTGTCTGCATTCCAGGACGTGGATTTCTCGAGCGAATGCTCGGACAGA
CAGATTTCGCCGGTGATTCCCACGGCGCCGGAACGGTGTGTTCCGTCTGT
TGCGGAGGTGAACGCCATGGGCGCGCTCAGCGCCGATGATGCGTTCGGCG
TGGAACAGCGGCTAGGCGCGGCGGCCATGCTCGCGCCGTCGTTTGTGGTG
TAG
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protein sequence of Ggra1713.t1

>Ggra1713.t1 ID=Ggra1713.t1|Name=Ggra1713.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MTSSFDHMLPPTERMPYTIITPQYSPHTTVAISLRHFEKQSKHQAEQEYD
DEHGLLPDSTADDDLSVDMHERTIQKKKRKVRSAIVSRRKNAIYEKKLEE
ELHHRDQVNADLRARLALFHDVLGNIREKISALERSVHNKQQQQAHAHMA
SGLGAAAAVSQLAPHVLRRTRPAINTAASMFPAAAAAQHLLAQQQHQQHQ
QQQQQQQQTQQNMFFLQHEDRLVEDVLNASQAKQLSAFQDVDFSSECSDR
QISPVIPTAPERCVPSVAEVNAMGALSADDAFGVEQRLGAAAMLAPSFVV
*
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mRNA from alignment at tig00000050_pilon:439052..439954+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1713.t1 ID=Ggra1713.t1|Name=Ggra1713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000050_pilon:439052..439954+ (Gracilaria gracilis GNS1m male)
ATGACTTCCTCATTCGATCATATGCTGCCGCCCACAGAGCGCATGCCCTA
CACCATCATCACGCCGCAGTACTCGCCGCACACCACCGTGGCCATCTCGC
TGCGCCACTTTGAGAAGCAGTCCAagcaccaggccgagcaggagtacgac
gacgagcacgggcTGCTGCCGGACTCCACCGCCGACGATGATCTCTCCGT
CGACATGCACGAGCGCACCATCCAGAAGAAGAAGCGCAAGGTGCGCTCCG
CCATCGTGTCGCGCCGCAAGAACGCCATCTACGAGAAGAAGCTCGAGGAG
GAGCTGCACCACAGGGACCAGGTCAACGCCGACCTGCGCGCCAGACTGGC
GCTGTTCCACGACGTGCTGGGTAACATTCGCGAGAAGATTTCCGCTCTGG
AGCGCAGTGTGCACAACAAGCAGCAGCAGCAAGCGCACGCGCACATGGCG
TCCGGACTGGGCGCCGCCGCCGCCGTGTCGCAGCTGGCTCCGCATGTGCT
CAGAAGAACACGGCCCGCCATCAACACCGCCGCCTCCATGTTCCCCGCTG
CCGCTGCCGCCCAACACCTGTTGGCGcaacaacaacatcaacaacatcaa
caacaacaacaacaacaacagcaaacacaacaaaacaTGTTTTTTCTACA
ACACGAGGATCGTCTAGTTGAGGACGTGCTCAACGCCAGTCAGGCTAAGC
AACTGTCTGCATTCCAGGACGTGGATTTCTCGAGCGAATGCTCGGACAGA
CAGATTTCGCCGGTGATTCCCACGGCGCCGGAACGGTGTGTTCCGTCTGT
TGCGGAGGTGAACGCCATGGGCGCGCTCAGCGCCGATGATGCGTTCGGCG
TGGAACAGCGGCTAGGCGCGGCGGCCATGCTCGCGCCGTCGTTTGTGGTG
TAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:439052..439954+

>Ggra1713.t1 ID=Ggra1713.t1|Name=Ggra1713.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00000050_pilon:439052..439954+ (Gracilaria gracilis GNS1m male)
ATGACTTCCTCATTCGATCATATGCTGCCGCCCACAGAGCGCATGCCCTA
CACCATCATCACGCCGCAGTACTCGCCGCACACCACCGTGGCCATCTCGC
TGCGCCACTTTGAGAAGCAGTCCAagcaccaggccgagcaggagtacgac
gacgagcacgggcTGCTGCCGGACTCCACCGCCGACGATGATCTCTCCGT
CGACATGCACGAGCGCACCATCCAGAAGAAGAAGCGCAAGGTGCGCTCCG
CCATCGTGTCGCGCCGCAAGAACGCCATCTACGAGAAGAAGCTCGAGGAG
GAGCTGCACCACAGGGACCAGGTCAACGCCGACCTGCGCGCCAGACTGGC
GCTGTTCCACGACGTGCTGGGTAACATTCGCGAGAAGATTTCCGCTCTGG
AGCGCAGTGTGCACAACAAGCAGCAGCAGCAAGCGCACGCGCACATGGCG
TCCGGACTGGGCGCCGCCGCCGCCGTGTCGCAGCTGGCTCCGCATGTGCT
CAGAAGAACACGGCCCGCCATCAACACCGCCGCCTCCATGTTCCCCGCTG
CCGCTGCCGCCCAACACCTGTTGGCGcaacaacaacatcaacaacatcaa
caacaacaacaacaacaacagcaaacacaacaaaacaTGTTTTTTCTACA
ACACGAGGATCGTCTAGTTGAGGACGTGCTCAACGCCAGTCAGGCTAAGC
AACTGTCTGCATTCCAGGACGTGGATTTCTCGAGCGAATGCTCGGACAGA
CAGATTTCGCCGGTGATTCCCACGGCGCCGGAACGGTGTGTTCCGTCTGT
TGCGGAGGTGAACGCCATGGGCGCGCTCAGCGCCGATGATGCGTTCGGCG
TGGAACAGCGGCTAGGCGCGGCGGCCATGCTCGCGCCGTCGTTTGTGGTG
TAG
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