Ggra1708.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1708.t1
Unique NameGgra1708.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:422474..423580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1708Ggra1708Gracilaria gracilis GNS1m malegenetig00000050_pilon 422474..423580 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1708.t1.start1Ggra1708.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 422474..422476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1708.t1.CDS1Ggra1708.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 422474..423580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1708.t1.exon1Ggra1708.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 422474..423580 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1708.t1.stop1Ggra1708.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 423578..423580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1708.t1Ggra1708.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 422474..423580 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1708.t1 ID=Ggra1708.t1|Name=Ggra1708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MPAIDTPNATSVALSAQPWLPTPSPQLRLSTPTLDPLPVTASADWSHALS
ANPGLYASTNLPTGLTPRFSPTFPQLQSPGVSAEIAANPTDPPPPSQSLS
DLFRCTEYPFTSVAPTKPVSNVPRAQVQKHDLPVSQPVSSAALRDLKASA
PLAAAYRTSSDVVRHTMPQTLPQTLPQTQPAFSQPITSFPLGRPDNIPSL
PPRPTAVAQAAVTAVPPVATPIAPVPDLTKASLTVGGQRAVLGSGIVSNA
VQEAQVRARMKAENFAKARKRKRCEQPTEADRAMEKIDEEESKLSPEQLK
RKRYERRLALNRESAAVSRVRRREYVKLLEEQLVNAEKERVRLATELSDM
QKQHNKLKDHLRKLEGEI*
back to top

spliced messenger RNA

>Ggra1708.t1 ID=Ggra1708.t1|Name=Ggra1708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000050_pilon:422474..423580+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCATCGACACGCCCAACGCGACCTCCGTCGCGCTTAGCGCGCA
GCCTTGGCTCCCTACCCCGTCGCCCCAGCTCCGTCTCTCCACCCCTACGC
TCGACCCGCTTCCCGTCACTGCTAGCGCCGACTGGTCGCATGCTCTTTCC
GCAAACCCCGGTTTGTATGCTTCTACAAACTTGCCAACTGGACTTACGCC
TCGCTTCTCGCCTACCTTCCCGCAGCTCCAGTCGCCTGGCGTTTCCGCAG
AGATCGCTGCGAATCCTACCGACCCGCCGCCGCCCTCGCAAAGTCTATCC
GATTTGTTTCGCTGTACCGAGTACCCTTTCACTTCTGTCGCCCCTACCAA
GCCCGTTTCCAACGTACCCCGTGCGCAGGTGCAAAAACATGACTTACCTG
TGTCTCAACCCGTTTCGTCCGCCGCGTTGCGTGACTTGAAGGCCTCCGCG
CCGCTGGCGGCCGCGTACCGCACATCGTCGGACGTCGTGCGTCACACCAT
GCCTCAGACCTTGCCACAAACGCTCCCTCAGACCCAACCCGCGTTTTCGC
AGCCAATCACTTCATTTCCGTTAGGAAGACCAGATAATATCCCGTCGCTG
CCTCCGCGTCCGACCGCCGTGGCGCAGGCGGCCGTTACGGCAGTGCCGCC
CGTAGCAACGCCCATCGCGCCTGTTCCGGACCTTACGAAGGCTTCGCTCA
CCGTTGGTGGACAGCGCGCCGTGCTAGGTTCTGGTATTGTGAGTAACGCC
GTGCAGGAGGCGCAAGTGCGTGCGCGTATGAAGGCGGAGAATTTTGCAAA
GGCGAGGAAGAGGAAGAGGTGTGAGCAGCCTACCGAGGCTGATAGGGCCA
TGGAGAAGATCGATGAAGAAGAGTCAAAGTTGTCGCCGGAACAGTTGAAG
AGGAAGAGGTATGAGAGGCGCTTGGCTCTCAATAGGGAGAGTGCTGCTGT
TTCTAGAGTACGGAGGAGGGAATATGTGAAATTGTTGGAAGAACAACTGG
TGAATGCAGAGAAGGAACGTGTGAGACTTGCTACTGAACTTTCTGATATG
CAGAAGCAGCATAACAAGCTCAAGGACCATCTTCGCAAGCTTGAGGGTGA
GATCTGA
back to top

protein sequence of Ggra1708.t1

>Ggra1708.t1 ID=Ggra1708.t1|Name=Ggra1708.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MPAIDTPNATSVALSAQPWLPTPSPQLRLSTPTLDPLPVTASADWSHALS
ANPGLYASTNLPTGLTPRFSPTFPQLQSPGVSAEIAANPTDPPPPSQSLS
DLFRCTEYPFTSVAPTKPVSNVPRAQVQKHDLPVSQPVSSAALRDLKASA
PLAAAYRTSSDVVRHTMPQTLPQTLPQTQPAFSQPITSFPLGRPDNIPSL
PPRPTAVAQAAVTAVPPVATPIAPVPDLTKASLTVGGQRAVLGSGIVSNA
VQEAQVRARMKAENFAKARKRKRCEQPTEADRAMEKIDEEESKLSPEQLK
RKRYERRLALNRESAAVSRVRRREYVKLLEEQLVNAEKERVRLATELSDM
QKQHNKLKDHLRKLEGEI*
back to top

mRNA from alignment at tig00000050_pilon:422474..423580+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1708.t1 ID=Ggra1708.t1|Name=Ggra1708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000050_pilon:422474..423580+ (Gracilaria gracilis GNS1m male)
ATGCCGGCCATCGACACGCCCAACGCGACCTCCGTCGCGCTTAGCGCGCA
GCCTTGGCTCCCTACCCCGTCGCCCCAGCTCCGTCTCTCCACCCCTACGC
TCGACCCGCTTCCCGTCACTGCTAGCGCCGACTGGTCGCATGCTCTTTCC
GCAAACCCCGGTTTGTATGCTTCTACAAACTTGCCAACTGGACTTACGCC
TCGCTTCTCGCCTACCTTCCCGCAGCTCCAGTCGCCTGGCGTTTCCGCAG
AGATCGCTGCGAATCCTACCGACCCGCCGCCGCCCTCGCAAAGTCTATCC
GATTTGTTTCGCTGTACCGAGTACCCTTTCACTTCTGTCGCCCCTACCAA
GCCCGTTTCCAACGTACCCCGTGCGCAGGTGCAAAAACATGACTTACCTG
TGTCTCAACCCGTTTCGTCCGCCGCGTTGCGTGACTTGAAGGCCTCCGCG
CCGCTGGCGGCCGCGTACCGCACATCGTCGGACGTCGTGCGTCACACCAT
GCCTCAGACCTTGCCACAAACGCTCCCTCAGACCCAACCCGCGTTTTCGC
AGCCAATCACTTCATTTCCGTTAGGAAGACCAGATAATATCCCGTCGCTG
CCTCCGCGTCCGACCGCCGTGGCGCAGGCGGCCGTTACGGCAGTGCCGCC
CGTAGCAACGCCCATCGCGCCTGTTCCGGACCTTACGAAGGCTTCGCTCA
CCGTTGGTGGACAGCGCGCCGTGCTAGGTTCTGGTATTGTGAGTAACGCC
GTGCAGGAGGCGCAAGTGCGTGCGCGTATGAAGGCGGAGAATTTTGCAAA
GGCGAGGAAGAGGAAGAGGTGTGAGCAGCCTACCGAGGCTGATAGGGCCA
TGGAGAAGATCGATGAAGAAGAGTCAAAGTTGTCGCCGGAACAGTTGAAG
AGGAAGAGGTATGAGAGGCGCTTGGCTCTCAATAGGGAGAGTGCTGCTGT
TTCTAGAGTACGGAGGAGGGAATATGTGAAATTGTTGGAAGAACAACTGG
TGAATGCAGAGAAGGAACGTGTGAGACTTGCTACTGAACTTTCTGATATG
CAGAAGCAGCATAACAAGCTCAAGGACCATCTTCGCAAGCTTGAGGGTGA
GATCTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:422474..423580+

>Ggra1708.t1 ID=Ggra1708.t1|Name=Ggra1708.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000050_pilon:422474..423580+ (Gracilaria gracilis GNS1m male)
ATGCCGGCCATCGACACGCCCAACGCGACCTCCGTCGCGCTTAGCGCGCA
GCCTTGGCTCCCTACCCCGTCGCCCCAGCTCCGTCTCTCCACCCCTACGC
TCGACCCGCTTCCCGTCACTGCTAGCGCCGACTGGTCGCATGCTCTTTCC
GCAAACCCCGGTTTGTATGCTTCTACAAACTTGCCAACTGGACTTACGCC
TCGCTTCTCGCCTACCTTCCCGCAGCTCCAGTCGCCTGGCGTTTCCGCAG
AGATCGCTGCGAATCCTACCGACCCGCCGCCGCCCTCGCAAAGTCTATCC
GATTTGTTTCGCTGTACCGAGTACCCTTTCACTTCTGTCGCCCCTACCAA
GCCCGTTTCCAACGTACCCCGTGCGCAGGTGCAAAAACATGACTTACCTG
TGTCTCAACCCGTTTCGTCCGCCGCGTTGCGTGACTTGAAGGCCTCCGCG
CCGCTGGCGGCCGCGTACCGCACATCGTCGGACGTCGTGCGTCACACCAT
GCCTCAGACCTTGCCACAAACGCTCCCTCAGACCCAACCCGCGTTTTCGC
AGCCAATCACTTCATTTCCGTTAGGAAGACCAGATAATATCCCGTCGCTG
CCTCCGCGTCCGACCGCCGTGGCGCAGGCGGCCGTTACGGCAGTGCCGCC
CGTAGCAACGCCCATCGCGCCTGTTCCGGACCTTACGAAGGCTTCGCTCA
CCGTTGGTGGACAGCGCGCCGTGCTAGGTTCTGGTATTGTGAGTAACGCC
GTGCAGGAGGCGCAAGTGCGTGCGCGTATGAAGGCGGAGAATTTTGCAAA
GGCGAGGAAGAGGAAGAGGTGTGAGCAGCCTACCGAGGCTGATAGGGCCA
TGGAGAAGATCGATGAAGAAGAGTCAAAGTTGTCGCCGGAACAGTTGAAG
AGGAAGAGGTATGAGAGGCGCTTGGCTCTCAATAGGGAGAGTGCTGCTGT
TTCTAGAGTACGGAGGAGGGAATATGTGAAATTGTTGGAAGAACAACTGG
TGAATGCAGAGAAGGAACGTGTGAGACTTGCTACTGAACTTTCTGATATG
CAGAAGCAGCATAACAAGCTCAAGGACCATCTTCGCAAGCTTGAGGGTGA
GATCTGA
back to top