Ggra1706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1706.t1
Unique Name	Ggra1706.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:419065..420558 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705550.1
PFAMs	His_Phos_2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K14410,ko:K19283,ko:K21403
KEGG Reaction	R00548,R11527
KEGG Pathway	ko00740,ko01100,ko04142,map00740,map01100,map04142
Evalue	1.94e-74
EggNOG OGs	KOG3720@1\|root,KOG3720@2759\|Eukaryota
EC	3.1.3.2,3.1.3.5
Description	acid phosphatase activity
COG category	K
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1706	Ggra1706	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 419065..420558 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1706.t1.stop1	Ggra1706.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 419065..419067 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1706.t1.CDS1	Ggra1706.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 419065..420558 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1706.t1.exon1	Ggra1706.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 419065..420558 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1706.t1.start1	Ggra1706.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 420556..420558 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1706.t1	Ggra1706.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 419065..420558 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:419065..420558-
coding sequence from alignment at tig00000050_pilon:419065..420558-

mRNA sequence

>Ggra1706.t1 ID=Ggra1706.t1|Name=Ggra1706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MRLFCLPAASLLLLFALANAAQSTLPPSPLVKKKLLFVLELCRHGDRTPL
NAFPSDALPLSKWPEGVGELTAIGQRAHYELGQRLRQRYVDTGFLPEAFS
PKHIYVRSTDIDRALVSATSQMAGLYPPGTSPNYDVRVRFGKDALHENEG
GLPHLYQPVPIHTESLDNEMLLLPDRNCPRLDRILRRSFKAPAFVDKMKQ
EHHFLQKAATVAKRDPHSFSVWDLEKLSDTWTCFQHHSVPLPEDATPEIV
SRAQNLSYWLLEYVNEGVEANRLRAGLILYNVRQYMTAAALKASKRLPPE
YEQDYKKFVLYSAHDTTVAATLAALQAFDGVNPPYNSTLIWELYAAESTG
EFFVKVEYNGRQLLLPGCSDHLCPADEYIRSTSKRTVEGEELKELECLIG
FRRFAAMVGGLFHTRKSPTPGNIVFNVEDDTSGGSYLGTPVIVVIMSVVI
IIGACGVASKLRSRYAGYERANDMNDEDAFYRQPIVQDHVSEQRILV*

spliced messenger RNA

>Ggra1706.t1 ID=Ggra1706.t1|Name=Ggra1706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:419065..420558- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCTTTTGTCTCCCTGCCGCGTCGCTTTTGCTTCTTTTCGCGCT
TGCTAACGCCGCACAATCCACTTTGCCGCCGTCCCCTCTTGTGAAGAAGA
AGCTGCTCTTCGTCCTCGAACTATGCCGACATGGCGATAGAACGCCGTTG
AACGCATTTCCATCCGATGCGCTCCCCCTCTCCAAATGGCCGGAGGGCGT
CGGCGAGCTAACAGCCATCGGTCAGCGAGCACACTATGAGCTCGGCCAGC
GTCTCCGTCAGCGATATGTCGATACCGGTTTCCTTCCCGAAGCGTTCTCG
CCCAAGCATATCTATGTCCGCAGCACCGATATAGATCGTGCCCTTGTGTC
TGCCACCTCGCAGATGGCTGGCTTGTACCCACCCGGTACATCTCCGAACT
ACGATGTGCGTGTGCGTTTTGGAAAAGATGCCTTGCATGAGAACGAGGGC
GGTTTGCCGCACTTGTATCAACCAGTACCCATCCATACCGAATCCTTGGA
CAACGAAATGCTTCTTCTACCCGACCGCAATTGTCCCAGACTAGATCGTA
TCTTGCGCCGAAGCTTCAAAGCCCCCGCTTTTGTCGACAAAATGAAGCAG
GAACATCACTTCTTGCAGAAGGCGGCAACCGTTGCAAAGCGTGATCCGCA
CAGTTTTTCCGTTTGGGATTTGGAAAAGCTCTCTGACACATGGACCTGTT
TTCAGCATCATTCCGTGCCACTTCCGGAGGATGCAACCCCTGAAATCGTC
AGCAGAGCTCAGAACTTGTCTTACTGGTTGCTTGAGTATGTGAATGAGGG
CGTGGAAGCCAATCGCCTGCGTGCAGGATTGATTTTGTATAACGTCAGAC
AGTATATGACCGCGGCTGCCCTCAAGGCCTCGAAACGACTTCCTCCCGAG
TACGAACAGGACTACAAGAAGTTCGTTTTGTACAGCGCCCATGATACAAC
TGTTGCCGCTACATTGGCCGCTTTACAAGCATTTGACGGTGTAAATCCAC
CGTACAACTCCACGCTTATCTGGGAGTTGTACGCAGCGGAGTCAACGGGC
GAATTTTTTGTCAAGGTTGAGTATAATGGCAGACAGCTTCTCCTGCCTGG
ATGCTCCGATCATTTGTGCCCAGCGGACGAGTACATTCGCTCAACCAGCA
AGCGTACTGTCGAAGGAGAAGAGCTTAAGGAACTTGAATGCCTGATCGGT
TTTAGAAGATTTGCGGCTATGGTTGGCGGCTTGTTCCACACCAGGAAGTC
TCCCACTCCAGGAAACATTGTTTTTAATGTTGAAGATGATACTTCTGGTG
GTTCATACCTAGGAACGCCTGTTATTGTTGTGATTATGAGCGTCGTAATC
ATCATCGGTGCTTGTGGCGTGGCAAGCAAACTGCGATCGAGGTACGCTGG
TTATGAACGAGCAAATGATATGAATGATGAGGATGCATTCTACCGTCAAC
CTATTGTGCAAGATCATGTTTCCGAGCAACGCATTCTCGTGTAG

protein sequence of Ggra1706.t1

>Ggra1706.t1 ID=Ggra1706.t1|Name=Ggra1706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MRLFCLPAASLLLLFALANAAQSTLPPSPLVKKKLLFVLELCRHGDRTPL
NAFPSDALPLSKWPEGVGELTAIGQRAHYELGQRLRQRYVDTGFLPEAFS
PKHIYVRSTDIDRALVSATSQMAGLYPPGTSPNYDVRVRFGKDALHENEG
GLPHLYQPVPIHTESLDNEMLLLPDRNCPRLDRILRRSFKAPAFVDKMKQ
EHHFLQKAATVAKRDPHSFSVWDLEKLSDTWTCFQHHSVPLPEDATPEIV
SRAQNLSYWLLEYVNEGVEANRLRAGLILYNVRQYMTAAALKASKRLPPE
YEQDYKKFVLYSAHDTTVAATLAALQAFDGVNPPYNSTLIWELYAAESTG
EFFVKVEYNGRQLLLPGCSDHLCPADEYIRSTSKRTVEGEELKELECLIG
FRRFAAMVGGLFHTRKSPTPGNIVFNVEDDTSGGSYLGTPVIVVIMSVVI
IIGACGVASKLRSRYAGYERANDMNDEDAFYRQPIVQDHVSEQRILV*

mRNA from alignment at tig00000050_pilon:419065..420558-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1706.t1 ID=Ggra1706.t1|Name=Ggra1706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:419065..420558- (Gracilaria gracilis GNS1m male)
ATGCGTCTCTTTTGTCTCCCTGCCGCGTCGCTTTTGCTTCTTTTCGCGCT
TGCTAACGCCGCACAATCCACTTTGCCGCCGTCCCCTCTTGTGAAGAAGA
AGCTGCTCTTCGTCCTCGAACTATGCCGACATGGCGATAGAACGCCGTTG
AACGCATTTCCATCCGATGCGCTCCCCCTCTCCAAATGGCCGGAGGGCGT
CGGCGAGCTAACAGCCATCGGTCAGCGAGCACACTATGAGCTCGGCCAGC
GTCTCCGTCAGCGATATGTCGATACCGGTTTCCTTCCCGAAGCGTTCTCG
CCCAAGCATATCTATGTCCGCAGCACCGATATAGATCGTGCCCTTGTGTC
TGCCACCTCGCAGATGGCTGGCTTGTACCCACCCGGTACATCTCCGAACT
ACGATGTGCGTGTGCGTTTTGGAAAAGATGCCTTGCATGAGAACGAGGGC
GGTTTGCCGCACTTGTATCAACCAGTACCCATCCATACCGAATCCTTGGA
CAACGAAATGCTTCTTCTACCCGACCGCAATTGTCCCAGACTAGATCGTA
TCTTGCGCCGAAGCTTCAAAGCCCCCGCTTTTGTCGACAAAATGAAGCAG
GAACATCACTTCTTGCAGAAGGCGGCAACCGTTGCAAAGCGTGATCCGCA
CAGTTTTTCCGTTTGGGATTTGGAAAAGCTCTCTGACACATGGACCTGTT
TTCAGCATCATTCCGTGCCACTTCCGGAGGATGCAACCCCTGAAATCGTC
AGCAGAGCTCAGAACTTGTCTTACTGGTTGCTTGAGTATGTGAATGAGGG
CGTGGAAGCCAATCGCCTGCGTGCAGGATTGATTTTGTATAACGTCAGAC
AGTATATGACCGCGGCTGCCCTCAAGGCCTCGAAACGACTTCCTCCCGAG
TACGAACAGGACTACAAGAAGTTCGTTTTGTACAGCGCCCATGATACAAC
TGTTGCCGCTACATTGGCCGCTTTACAAGCATTTGACGGTGTAAATCCAC
CGTACAACTCCACGCTTATCTGGGAGTTGTACGCAGCGGAGTCAACGGGC
GAATTTTTTGTCAAGGTTGAGTATAATGGCAGACAGCTTCTCCTGCCTGG
ATGCTCCGATCATTTGTGCCCAGCGGACGAGTACATTCGCTCAACCAGCA
AGCGTACTGTCGAAGGAGAAGAGCTTAAGGAACTTGAATGCCTGATCGGT
TTTAGAAGATTTGCGGCTATGGTTGGCGGCTTGTTCCACACCAGGAAGTC
TCCCACTCCAGGAAACATTGTTTTTAATGTTGAAGATGATACTTCTGGTG
GTTCATACCTAGGAACGCCTGTTATTGTTGTGATTATGAGCGTCGTAATC
ATCATCGGTGCTTGTGGCGTGGCAAGCAAACTGCGATCGAGGTACGCTGG
TTATGAACGAGCAAATGATATGAATGATGAGGATGCATTCTACCGTCAAC
CTATTGTGCAAGATCATGTTTCCGAGCAACGCATTCTCGTGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:419065..420558-

>Ggra1706.t1 ID=Ggra1706.t1|Name=Ggra1706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:419065..420558- (Gracilaria gracilis GNS1m male)
ATGCGTCTCTTTTGTCTCCCTGCCGCGTCGCTTTTGCTTCTTTTCGCGCT
TGCTAACGCCGCACAATCCACTTTGCCGCCGTCCCCTCTTGTGAAGAAGA
AGCTGCTCTTCGTCCTCGAACTATGCCGACATGGCGATAGAACGCCGTTG
AACGCATTTCCATCCGATGCGCTCCCCCTCTCCAAATGGCCGGAGGGCGT
CGGCGAGCTAACAGCCATCGGTCAGCGAGCACACTATGAGCTCGGCCAGC
GTCTCCGTCAGCGATATGTCGATACCGGTTTCCTTCCCGAAGCGTTCTCG
CCCAAGCATATCTATGTCCGCAGCACCGATATAGATCGTGCCCTTGTGTC
TGCCACCTCGCAGATGGCTGGCTTGTACCCACCCGGTACATCTCCGAACT
ACGATGTGCGTGTGCGTTTTGGAAAAGATGCCTTGCATGAGAACGAGGGC
GGTTTGCCGCACTTGTATCAACCAGTACCCATCCATACCGAATCCTTGGA
CAACGAAATGCTTCTTCTACCCGACCGCAATTGTCCCAGACTAGATCGTA
TCTTGCGCCGAAGCTTCAAAGCCCCCGCTTTTGTCGACAAAATGAAGCAG
GAACATCACTTCTTGCAGAAGGCGGCAACCGTTGCAAAGCGTGATCCGCA
CAGTTTTTCCGTTTGGGATTTGGAAAAGCTCTCTGACACATGGACCTGTT
TTCAGCATCATTCCGTGCCACTTCCGGAGGATGCAACCCCTGAAATCGTC
AGCAGAGCTCAGAACTTGTCTTACTGGTTGCTTGAGTATGTGAATGAGGG
CGTGGAAGCCAATCGCCTGCGTGCAGGATTGATTTTGTATAACGTCAGAC
AGTATATGACCGCGGCTGCCCTCAAGGCCTCGAAACGACTTCCTCCCGAG
TACGAACAGGACTACAAGAAGTTCGTTTTGTACAGCGCCCATGATACAAC
TGTTGCCGCTACATTGGCCGCTTTACAAGCATTTGACGGTGTAAATCCAC
CGTACAACTCCACGCTTATCTGGGAGTTGTACGCAGCGGAGTCAACGGGC
GAATTTTTTGTCAAGGTTGAGTATAATGGCAGACAGCTTCTCCTGCCTGG
ATGCTCCGATCATTTGTGCCCAGCGGACGAGTACATTCGCTCAACCAGCA
AGCGTACTGTCGAAGGAGAAGAGCTTAAGGAACTTGAATGCCTGATCGGT
TTTAGAAGATTTGCGGCTATGGTTGGCGGCTTGTTCCACACCAGGAAGTC
TCCCACTCCAGGAAACATTGTTTTTAATGTTGAAGATGATACTTCTGGTG
GTTCATACCTAGGAACGCCTGTTATTGTTGTGATTATGAGCGTCGTAATC
ATCATCGGTGCTTGTGGCGTGGCAAGCAAACTGCGATCGAGGTACGCTGG
TTATGAACGAGCAAATGATATGAATGATGAGGATGCATTCTACCGTCAAC
CTATTGTGCAAGATCATGTTTCCGAGCAACGCATTCTCGTGTAG