Ggra1697.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1697.t1
Unique NameGgra1697.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:397845..399211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65672.G4TNF3
PFAMsSynMuv_product
Max annot lvl4751|Fungi
Evalue1.41e-41
EggNOG OGsKOG2812@1|root,KOG2812@2759|Eukaryota,38BNU@33154|Opisthokonta,3P3G4@4751|Fungi,3V0TI@5204|Basidiomycota,227E7@155619|Agaricomycetes,3H2VG@355688|Agaricomycetes incertae sedis
DescriptionRas-induced vulval development antagonist
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1697Ggra1697Gracilaria gracilis GNS1m malegenetig00000050_pilon 397845..399211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1Ggra1697.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 397845..399211 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1.start1Ggra1697.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 397845..397847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1.CDS1Ggra1697.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 397845..397853 +
Ggra1697.t1.CDS2Ggra1697.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 398522..399211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1.exon1Ggra1697.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 397845..397853 +
Ggra1697.t1.exon2Ggra1697.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 398522..399211 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1.intron1Ggra1697.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 397854..398521 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1697.t1.stop1Ggra1697.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 399209..399211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1697.t1 ID=Ggra1697.t1|Name=Ggra1697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MGGHERGEDVRGFWARRAAQREEAAHVTVWERSPSPPARLENRFDVGADV
RAKRERKRKRKEEKRRRRAERAKQQQKKETGDQENEEKQTEIQPKALKGK
QDSDEDVDDAPLGPALPSKEKRDFGKALLKGEGSKMAAFIQEGARIPRRG
EIGLTGDQISSFENQGYVMSGSRNRRMEAVRIRKENQVYSAEERAALNEL
DRDEKKRREELLLKQYRELVESKLGGDDEQGK*
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spliced messenger RNA

>Ggra1697.t1 ID=Ggra1697.t1|Name=Ggra1697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000050_pilon:397845..399211+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGGCATGAACGAGGCGAAGATGTACGCGGGTTTTGGGCTCGCCG
AGCAGCTCAGCGAGAGGAGGCTGCGCACGTTACGGTATGGGAGCGCTCAC
CGTCACCGCCGGCACGTTTGGAGAATCGTTTCGATGTCGGGGCCGATGTG
CGGGCaaagcgtgaacgaaagcgaaaacgaaaagaagagaaaCGTCGTCG
TCGCGCAGAACGCGCTAAACAGCAACAGAAGAAAGAGACTGGAGACCAAG
AAAATGAGGAAAAGCAGACAGAAATCCAACCCAAAGCGCTGAAAGGAAAG
CAGGACAGTGACGAAGATGTAGATGATGCGCCATTGGGACCTGCACTACC
CTCAAAGGAAAAGAGAGATTTCGGGAAGGCTCTACTAAAAGGGGAAGGAT
CTAAGATGGCCGCCTTCATCCAGGAAGGCGCGCGCATTCCGAGAAGAGGG
GAAATTGGTTTGACCGGGGATCAGATCTCATCGTTCGAGAACCAGGGCTA
CGTCATGAGCGGGAGTCGTAATCGAAGGATGGAAGCAGTAAGAATACGTA
AGGAAAACCAGGTGTATTCTGCCGAGGAGCGCGCGGCTCTCAATGAACTG
GACCGGGATGAGAAGAAGCGCAGGGAGGAGCTGTTGCTCAAGCAGTACAG
AGAGCTGGTTGAAAGCAAGCTCGGGGGGGATGATGAGCAGGGAAAGTAA
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protein sequence of Ggra1697.t1

>Ggra1697.t1 ID=Ggra1697.t1|Name=Ggra1697.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MGGHERGEDVRGFWARRAAQREEAAHVTVWERSPSPPARLENRFDVGADV
RAKRERKRKRKEEKRRRRAERAKQQQKKETGDQENEEKQTEIQPKALKGK
QDSDEDVDDAPLGPALPSKEKRDFGKALLKGEGSKMAAFIQEGARIPRRG
EIGLTGDQISSFENQGYVMSGSRNRRMEAVRIRKENQVYSAEERAALNEL
DRDEKKRREELLLKQYRELVESKLGGDDEQGK*
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mRNA from alignment at tig00000050_pilon:397845..399211+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1697.t1 ID=Ggra1697.t1|Name=Ggra1697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1367bp|location=Sequence derived from alignment at tig00000050_pilon:397845..399211+ (Gracilaria gracilis GNS1m male)
ATGGGCGGGGTAAGCGCAATTCATACTCTTGGTCTTCGCGCGAGCGCTCT
GCTTCGCCTACGCCGCCGCCCGATGACGACTACTATCGCCGGCGATATCA
GCGTGCACGCAGGCGATCGCCCAGTTTAACACCGCCGCCGCCGCCGAAAC
GCTCGCGCCGAAATAGAACGCGTTCACCTGCGCGCCGGGAGAGAACGCGG
TCACCCATACGCCAGGAAAGAACGCGGTCACCCATACGCCAGGAAAGAAC
GCGATCACCTGTACGACGCGAAACAAGGCGATCGCCTACACATCGAGGTG
GAGCGCGGTCACCTGTGCGTCGGGATAGAACGCGGTCACCTATACCCCGC
AACAGAACGCGATCGCCTGCACGCCGTGATAGATCTCCTTCGCCTACACG
CGGAGATAGAGTGCGTTCGTCTGCACGCCGAGACAGAGCGCATTCACCTG
CAGGAGGAGACAGAACGCGTTCTCCTCCACGCCGAGAAAGAGGTCCTCCG
CCTATACGCCGGCGATCTTCACTCTCCCCAGAACGTCTCCGCCGATCACC
ATCTCCGTATCGTCGACGTCGGACTCCTTTCCCTGTACGTCGAAGTCGCT
CCGCAACACCTCCCCACCATGGCCGCTTGCGTTCACCTCAGTTTCGTCGG
CGCTCTCCTCCACCTCGTTTGCCACAGCATGAACGAGGCGAAGATGTACG
CGGGTTTTGGGCTCGCCGAGCAGCTCAGCGAGAGGAGGCTGCGCACGTTA
CGGTATGGGAGCGCTCACCGTCACCGCCGGCACGTTTGGAGAATCGTTTC
GATGTCGGGGCCGATGTGCGGGCaaagcgtgaacgaaagcgaaaacgaaa
agaagagaaaCGTCGTCGTCGCGCAGAACGCGCTAAACAGCAACAGAAGA
AAGAGACTGGAGACCAAGAAAATGAGGAAAAGCAGACAGAAATCCAACCC
AAAGCGCTGAAAGGAAAGCAGGACAGTGACGAAGATGTAGATGATGCGCC
ATTGGGACCTGCACTACCCTCAAAGGAAAAGAGAGATTTCGGGAAGGCTC
TACTAAAAGGGGAAGGATCTAAGATGGCCGCCTTCATCCAGGAAGGCGCG
CGCATTCCGAGAAGAGGGGAAATTGGTTTGACCGGGGATCAGATCTCATC
GTTCGAGAACCAGGGCTACGTCATGAGCGGGAGTCGTAATCGAAGGATGG
AAGCAGTAAGAATACGTAAGGAAAACCAGGTGTATTCTGCCGAGGAGCGC
GCGGCTCTCAATGAACTGGACCGGGATGAGAAGAAGCGCAGGGAGGAGCT
GTTGCTCAAGCAGTACAGAGAGCTGGTTGAAAGCAAGCTCGGGGGGGATG
ATGAGCAGGGAAAGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:397845..399211+

>Ggra1697.t1 ID=Ggra1697.t1|Name=Ggra1697.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000050_pilon:397845..399211+ (Gracilaria gracilis GNS1m male)
ATGGGCGGGCATGAACGAGGCGAAGATGTACGCGGGTTTTGGGCTCGCCG
AGCAGCTCAGCGAGAGGAGGCTGCGCACGTTACGGTATGGGAGCGCTCAC
CGTCACCGCCGGCACGTTTGGAGAATCGTTTCGATGTCGGGGCCGATGTG
CGGGCaaagcgtgaacgaaagcgaaaacgaaaagaagagaaaCGTCGTCG
TCGCGCAGAACGCGCTAAACAGCAACAGAAGAAAGAGACTGGAGACCAAG
AAAATGAGGAAAAGCAGACAGAAATCCAACCCAAAGCGCTGAAAGGAAAG
CAGGACAGTGACGAAGATGTAGATGATGCGCCATTGGGACCTGCACTACC
CTCAAAGGAAAAGAGAGATTTCGGGAAGGCTCTACTAAAAGGGGAAGGAT
CTAAGATGGCCGCCTTCATCCAGGAAGGCGCGCGCATTCCGAGAAGAGGG
GAAATTGGTTTGACCGGGGATCAGATCTCATCGTTCGAGAACCAGGGCTA
CGTCATGAGCGGGAGTCGTAATCGAAGGATGGAAGCAGTAAGAATACGTA
AGGAAAACCAGGTGTATTCTGCCGAGGAGCGCGCGGCTCTCAATGAACTG
GACCGGGATGAGAAGAAGCGCAGGGAGGAGCTGTTGCTCAAGCAGTACAG
AGAGCTGGTTGAAAGCAAGCTCGGGGGGGATGATGAGCAGGGAAAGTAA
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