Ggra1690.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1690.t1
Unique NameGgra1690.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:379240..379974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1304284.L21TH_0927
Preferred namerplM
PFAMsRibosomal_L13
Max annot lvl186801|Clostridia
KEGG koko:K02871
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue1.82e-40
EggNOG OGsCOG0102@1|root,COG0102@2|Bacteria,1V3HX@1239|Firmicutes,24HD9@186801|Clostridia,36HZ3@31979|Clostridiaceae
DescriptionThis protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1690Ggra1690Gracilaria gracilis GNS1m malegenetig00000050_pilon 379240..379974 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1690.t1.stop1Ggra1690.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 379240..379242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1690.t1.CDS1Ggra1690.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 379240..379974 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1690.t1.exon1Ggra1690.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 379240..379974 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1690.t1.start1Ggra1690.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 379972..379974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1690.t1Ggra1690.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 379240..379974 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1690.t1 ID=Ggra1690.t1|Name=Ggra1690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MAAEKLLTTQRGSSAWLRHLAVRDRIWRLVDARDQVLGRVAGQIARLLQG
KHKPTYLDNINSGDPVIVINARHVVLTGRKSYNKLYIHHTGYPGGLKQVP
IEDVRRKRPEHVIQAAVKNMLPKNKLRPIWMENLRVYMDADHDHHPQKPV
LVAPAHCGSRLGHGGPPTIHELDTWWNDNIINDSDQVLSKLASEQQLNPP
QGLAQVLQFSQLDDPSQQQIEARQRYITAAGHALTQDSVIVPNV*
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spliced messenger RNA

>Ggra1690.t1 ID=Ggra1690.t1|Name=Ggra1690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000050_pilon:379240..379974- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGAGAAGCTCCTCACCACGCAGCGTGGCTCTAGTGCGTGGTT
GCGCCATCTTGCGGTACGCGATCGTATATGGCGTCTTGTAGACGCAAGAG
ACCAGGTGCTGGGACGCGTGGCAGGCCAGATAGCGCGCTTGTTGCAGGGC
AAGCACAAGCCCACTTATCTGGACAATATCAATAGTGGCGATCCAGTCAT
CGTCATAAACGCCCGACATGTCGTTCTTACAGGCCGAAAATCGTACAATA
AGCTTTACATTCATCACACTGGTTATCCGGGCGGTCTCAAGCAAGTCCCC
ATTGAGGATGTCAGGCGCAAGAGACCGGAACACGTAATACAAGCTGCTGT
CAAGAACATGCTACCCAAGAACAAGCTCAGACCCATTTGGATGGAGAATC
TTCGTGTCTATATGGATGCAGATCATGACCATCACCCACAGAAACCCGTT
TTGGTCGCGCCGGCGCATTGCGGAAGTAGGCTTGGACACGGCGGTCCGCC
CACAATACATGAGCTTGACACCTGGTGGAACGACAACATCATCAACGACT
CGGATCAAGTCCTCAGCAAACTTGCTTCAGAGCAGCAACTGAATCCGCCC
CAAGGCCTTGCTCAAGTTTTGCAGTTCTCACAACTCGATGATCCATCACA
ACAACAAATTGAAGCGCGTCAACGCTATATAACAGCCGCGGGACACGCCT
TGACACAAGATTCTGTCATTGTACCCAACGTCTAA
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protein sequence of Ggra1690.t1

>Ggra1690.t1 ID=Ggra1690.t1|Name=Ggra1690.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MAAEKLLTTQRGSSAWLRHLAVRDRIWRLVDARDQVLGRVAGQIARLLQG
KHKPTYLDNINSGDPVIVINARHVVLTGRKSYNKLYIHHTGYPGGLKQVP
IEDVRRKRPEHVIQAAVKNMLPKNKLRPIWMENLRVYMDADHDHHPQKPV
LVAPAHCGSRLGHGGPPTIHELDTWWNDNIINDSDQVLSKLASEQQLNPP
QGLAQVLQFSQLDDPSQQQIEARQRYITAAGHALTQDSVIVPNV*
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mRNA from alignment at tig00000050_pilon:379240..379974-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1690.t1 ID=Ggra1690.t1|Name=Ggra1690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000050_pilon:379240..379974- (Gracilaria gracilis GNS1m male)
ATGGCTGCCGAGAAGCTCCTCACCACGCAGCGTGGCTCTAGTGCGTGGTT
GCGCCATCTTGCGGTACGCGATCGTATATGGCGTCTTGTAGACGCAAGAG
ACCAGGTGCTGGGACGCGTGGCAGGCCAGATAGCGCGCTTGTTGCAGGGC
AAGCACAAGCCCACTTATCTGGACAATATCAATAGTGGCGATCCAGTCAT
CGTCATAAACGCCCGACATGTCGTTCTTACAGGCCGAAAATCGTACAATA
AGCTTTACATTCATCACACTGGTTATCCGGGCGGTCTCAAGCAAGTCCCC
ATTGAGGATGTCAGGCGCAAGAGACCGGAACACGTAATACAAGCTGCTGT
CAAGAACATGCTACCCAAGAACAAGCTCAGACCCATTTGGATGGAGAATC
TTCGTGTCTATATGGATGCAGATCATGACCATCACCCACAGAAACCCGTT
TTGGTCGCGCCGGCGCATTGCGGAAGTAGGCTTGGACACGGCGGTCCGCC
CACAATACATGAGCTTGACACCTGGTGGAACGACAACATCATCAACGACT
CGGATCAAGTCCTCAGCAAACTTGCTTCAGAGCAGCAACTGAATCCGCCC
CAAGGCCTTGCTCAAGTTTTGCAGTTCTCACAACTCGATGATCCATCACA
ACAACAAATTGAAGCGCGTCAACGCTATATAACAGCCGCGGGACACGCCT
TGACACAAGATTCTGTCATTGTACCCAACGTCTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:379240..379974-

>Ggra1690.t1 ID=Ggra1690.t1|Name=Ggra1690.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000050_pilon:379240..379974- (Gracilaria gracilis GNS1m male)
ATGGCTGCCGAGAAGCTCCTCACCACGCAGCGTGGCTCTAGTGCGTGGTT
GCGCCATCTTGCGGTACGCGATCGTATATGGCGTCTTGTAGACGCAAGAG
ACCAGGTGCTGGGACGCGTGGCAGGCCAGATAGCGCGCTTGTTGCAGGGC
AAGCACAAGCCCACTTATCTGGACAATATCAATAGTGGCGATCCAGTCAT
CGTCATAAACGCCCGACATGTCGTTCTTACAGGCCGAAAATCGTACAATA
AGCTTTACATTCATCACACTGGTTATCCGGGCGGTCTCAAGCAAGTCCCC
ATTGAGGATGTCAGGCGCAAGAGACCGGAACACGTAATACAAGCTGCTGT
CAAGAACATGCTACCCAAGAACAAGCTCAGACCCATTTGGATGGAGAATC
TTCGTGTCTATATGGATGCAGATCATGACCATCACCCACAGAAACCCGTT
TTGGTCGCGCCGGCGCATTGCGGAAGTAGGCTTGGACACGGCGGTCCGCC
CACAATACATGAGCTTGACACCTGGTGGAACGACAACATCATCAACGACT
CGGATCAAGTCCTCAGCAAACTTGCTTCAGAGCAGCAACTGAATCCGCCC
CAAGGCCTTGCTCAAGTTTTGCAGTTCTCACAACTCGATGATCCATCACA
ACAACAAATTGAAGCGCGTCAACGCTATATAACAGCCGCGGGACACGCCT
TGACACAAGATTCTGTCATTGTACCCAACGTCTAA
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