Ggra1688.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1688.t1
Unique NameGgra1688.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:373704..374771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ081CT
PFAMsIGPS
Max annot lvl2759|Eukaryota
KEGG rclassRC00944
KEGG koko:K01609
KEGG ReactionR03508
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Evalue1.05e-109
EggNOG OGsCOG0134@1|root,KOG4201@2759|Eukaryota
EC4.1.1.48
Descriptionindole-3-glycerol-phosphate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1688Ggra1688Gracilaria gracilis GNS1m malegenetig00000050_pilon 373704..374771 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1688.t1.stop1Ggra1688.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 373704..373706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1688.t1.CDS1Ggra1688.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 373704..374771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1688.t1.exon1Ggra1688.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 373704..374771 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1688.t1.start1Ggra1688.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 374769..374771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1688.t1Ggra1688.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 373704..374771 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1688.t1 ID=Ggra1688.t1|Name=Ggra1688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MAFVTPLSTTHFRGKSPLLACRHRVTRRSLYMCAPTGVPDVLAKILERKK
DEVAALKSQVSDDSDHPISKALGTTSDRSKAFYNALNTRKGSLTVIAEIK
RKSPSKGFIGKINDAGILSRVYYEGGAAAISVLTDLEGFGGTMEDLKRVV
ETQKRFKGNFPGPCPVLRKDFVIDEIQIAEAAVGGASAVLLIVAALGKER
TKELLEAAHRMGLDALVEVHDEGELKIALEIGADIIGVNNRDLRNFDVSL
DTSFRLAPLIPDGVVKIAESGITDSLDAWKLRDAGFNAILVGETLVKASE
GSTADSTSYTVGYNQAKGYIKHFKSKGSVPFGNTSIAPFYGRGEGAKESL
GELSI*
back to top

spliced messenger RNA

>Ggra1688.t1 ID=Ggra1688.t1|Name=Ggra1688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000050_pilon:373704..374771- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTTACCCCTCTTTCTACAACTCATTTCCGCGGAAAGTCGCC
TCTACTGGCCTGTCGGCACCGAGTCACACGAAGATCGCTCTATATGTGTG
CTCCAACTGGCGTACCAGATGTACTTGCAAAGATTCTCGAGCGTAAAAAG
GATGAAGTTGCAGCGTTAAAATCACAGGTCTCTGATGACTCTGATCATCC
TATTTCTAAGGCCTTAGGGACAACAAGTGATCGTAGCAAGGCTTTTTACA
ACGCACTCAATACTCGGAAGGGTTCTTTGACCGTCATTGCCGAGATTAAG
CGCAAGAGTCCCAGCAAGGGCTTCATTGGCAAAATCAACGATGCAGGCAT
TCTTTCTCGTGTTTATTATGAAGGCGGTGCTGCTGCCATTTCGGTGCTCA
CTGACCTGGAAGGCTTCGGTGGGACCATGGAAGATCTTAAACGAGTAGTT
GAGACACAGAAGCGATTCAAAGGGAATTTTCCAGGTCCGTGTCCCGTGCT
TCGAAAAGACTTCGTCATAGATGAGATTCAAATAGCTGAAGCAGCAGTTG
GCGGAGCAAGTGCGGTTTTGCTTATCGTCGCCGCGTTGGGCAAGGAGCGT
ACAAAGGAACTTCTTGAAGCGGCGCATAGAATGGGTCTTGATGCATTGGT
AGAGGTGCACGATGAAGGAGAACTCAAAATAGCTCTTGAGATTGGTGCCG
ACATTATTGGAGTTAACAATCGTGACTTACGAAATTTCGACGTCTCCTTA
GACACTAGTTTCAGATTAGCTCCACTTATCCCTGACGGAGTGGTTAAAAT
TGCGGAGAGCGGTATTACGGATTCCTTAGATGCGTGGAAGCTGCGCGATG
CGGGCTTCAACGCAATCCTTGTTGGGGAAACTTTGGTTAAGGCATCCGAG
GGGAGTACTGCTGATAGCACCAGTTACACGGTTGGGTACAACCAAGCAAA
AGGATATATCAAGCATTTCAAGTCCAAAGGAAGCGTTCCGTTTGGAAACA
CCAGCATAGCACCTTTCTATGGGAGGGGAGAAGGTGCGAAGGAGTCTTTG
GGTGAGCTCTCCATTTAA
back to top

protein sequence of Ggra1688.t1

>Ggra1688.t1 ID=Ggra1688.t1|Name=Ggra1688.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MAFVTPLSTTHFRGKSPLLACRHRVTRRSLYMCAPTGVPDVLAKILERKK
DEVAALKSQVSDDSDHPISKALGTTSDRSKAFYNALNTRKGSLTVIAEIK
RKSPSKGFIGKINDAGILSRVYYEGGAAAISVLTDLEGFGGTMEDLKRVV
ETQKRFKGNFPGPCPVLRKDFVIDEIQIAEAAVGGASAVLLIVAALGKER
TKELLEAAHRMGLDALVEVHDEGELKIALEIGADIIGVNNRDLRNFDVSL
DTSFRLAPLIPDGVVKIAESGITDSLDAWKLRDAGFNAILVGETLVKASE
GSTADSTSYTVGYNQAKGYIKHFKSKGSVPFGNTSIAPFYGRGEGAKESL
GELSI*
back to top

mRNA from alignment at tig00000050_pilon:373704..374771-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1688.t1 ID=Ggra1688.t1|Name=Ggra1688.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000050_pilon:373704..374771- (Gracilaria gracilis GNS1m male)
ATGGCATTCGTTACCCCTCTTTCTACAACTCATTTCCGCGGAAAGTCGCC
TCTACTGGCCTGTCGGCACCGAGTCACACGAAGATCGCTCTATATGTGTG
CTCCAACTGGCGTACCAGATGTACTTGCAAAGATTCTCGAGCGTAAAAAG
GATGAAGTTGCAGCGTTAAAATCACAGGTCTCTGATGACTCTGATCATCC
TATTTCTAAGGCCTTAGGGACAACAAGTGATCGTAGCAAGGCTTTTTACA
ACGCACTCAATACTCGGAAGGGTTCTTTGACCGTCATTGCCGAGATTAAG
CGCAAGAGTCCCAGCAAGGGCTTCATTGGCAAAATCAACGATGCAGGCAT
TCTTTCTCGTGTTTATTATGAAGGCGGTGCTGCTGCCATTTCGGTGCTCA
CTGACCTGGAAGGCTTCGGTGGGACCATGGAAGATCTTAAACGAGTAGTT
GAGACACAGAAGCGATTCAAAGGGAATTTTCCAGGTCCGTGTCCCGTGCT
TCGAAAAGACTTCGTCATAGATGAGATTCAAATAGCTGAAGCAGCAGTTG
GCGGAGCAAGTGCGGTTTTGCTTATCGTCGCCGCGTTGGGCAAGGAGCGT
ACAAAGGAACTTCTTGAAGCGGCGCATAGAATGGGTCTTGATGCATTGGT
AGAGGTGCACGATGAAGGAGAACTCAAAATAGCTCTTGAGATTGGTGCCG
ACATTATTGGAGTTAACAATCGTGACTTACGAAATTTCGACGTCTCCTTA
GACACTAGTTTCAGATTAGCTCCACTTATCCCTGACGGAGTGGTTAAAAT
TGCGGAGAGCGGTATTACGGATTCCTTAGATGCGTGGAAGCTGCGCGATG
CGGGCTTCAACGCAATCCTTGTTGGGGAAACTTTGGTTAAGGCATCCGAG
GGGAGTACTGCTGATAGCACCAGTTACACGGTTGGGTACAACCAAGCAAA
AGGATATATCAAGCATTTCAAGTCCAAAGGAAGCGTTCCGTTTGGAAACA
CCAGCATAGCACCTTTCTATGGGAGGGGAGAAGGTGCGAAGGAGTCTTTG
GGTGAGCTCTCCATTTAA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:373704..374771-

>Ggra1688.t1 ID=Ggra1688.t1|Name=Ggra1688.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000050_pilon:373704..374771- (Gracilaria gracilis GNS1m male)
ATGGCATTCGTTACCCCTCTTTCTACAACTCATTTCCGCGGAAAGTCGCC
TCTACTGGCCTGTCGGCACCGAGTCACACGAAGATCGCTCTATATGTGTG
CTCCAACTGGCGTACCAGATGTACTTGCAAAGATTCTCGAGCGTAAAAAG
GATGAAGTTGCAGCGTTAAAATCACAGGTCTCTGATGACTCTGATCATCC
TATTTCTAAGGCCTTAGGGACAACAAGTGATCGTAGCAAGGCTTTTTACA
ACGCACTCAATACTCGGAAGGGTTCTTTGACCGTCATTGCCGAGATTAAG
CGCAAGAGTCCCAGCAAGGGCTTCATTGGCAAAATCAACGATGCAGGCAT
TCTTTCTCGTGTTTATTATGAAGGCGGTGCTGCTGCCATTTCGGTGCTCA
CTGACCTGGAAGGCTTCGGTGGGACCATGGAAGATCTTAAACGAGTAGTT
GAGACACAGAAGCGATTCAAAGGGAATTTTCCAGGTCCGTGTCCCGTGCT
TCGAAAAGACTTCGTCATAGATGAGATTCAAATAGCTGAAGCAGCAGTTG
GCGGAGCAAGTGCGGTTTTGCTTATCGTCGCCGCGTTGGGCAAGGAGCGT
ACAAAGGAACTTCTTGAAGCGGCGCATAGAATGGGTCTTGATGCATTGGT
AGAGGTGCACGATGAAGGAGAACTCAAAATAGCTCTTGAGATTGGTGCCG
ACATTATTGGAGTTAACAATCGTGACTTACGAAATTTCGACGTCTCCTTA
GACACTAGTTTCAGATTAGCTCCACTTATCCCTGACGGAGTGGTTAAAAT
TGCGGAGAGCGGTATTACGGATTCCTTAGATGCGTGGAAGCTGCGCGATG
CGGGCTTCAACGCAATCCTTGTTGGGGAAACTTTGGTTAAGGCATCCGAG
GGGAGTACTGCTGATAGCACCAGTTACACGGTTGGGTACAACCAAGCAAA
AGGATATATCAAGCATTTCAAGTCCAAAGGAAGCGTTCCGTTTGGAAACA
CCAGCATAGCACCTTTCTATGGGAGGGGAGAAGGTGCGAAGGAGTCTTTG
GGTGAGCTCTCCATTTAA
back to top