Ggra1687.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1687.t1
Unique NameGgra1687.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:369377..372860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1687Ggra1687Gracilaria gracilis GNS1m malegenetig00000050_pilon 369377..372860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1Ggra1687.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 369377..372860 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1.start1Ggra1687.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 369377..369379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1.CDS1Ggra1687.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 369377..369558 +
Ggra1687.t1.CDS2Ggra1687.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 372512..372860 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1.exon1Ggra1687.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 369377..369558 +
Ggra1687.t1.exon2Ggra1687.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 372512..372860 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1.intron1Ggra1687.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 369559..372511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1687.t1.stop1Ggra1687.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 372858..372860 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1687.t1 ID=Ggra1687.t1|Name=Ggra1687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MAVDIWGFAGRRAANFLIVVIAVRALQEIFDELLEVLVDFTVDEGVGHGG
HGDEEYAAVDRVSNNFASTFKDDCSAAIARVSGGLTCWEAEGLWTPGTDQ
YDFSGEIERNASINIIVSLVPTVPGEQQWLEIKKLISTKVKEYQLDCQLI
HVMSWEVQPQIFSVDDYANSDEQLRS*
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spliced messenger RNA

>Ggra1687.t1 ID=Ggra1687.t1|Name=Ggra1687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000050_pilon:369377..372860+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTTGATATTTGGGGCTTTGCCGGGCGCAGAGCAGCCAATTTTCT
TATTGTCGTTATCGCTGTCAGAGCTCTCCAGGAGATCTTCGATGAGCTTC
TCGAAGTCCTCGTCGACTTCACTGTCGACGAAGGTGTGGGGCATGGCGGC
CATGGCGATGAGGAATATGCTGCTGTTGACCGCGTGAGTAACAACTTTGC
TTCGACCTTCAAGGATGATTGCTCTGCTGCTATTGCACGTGTGAGTGGAG
GATTGACTTGCTGGGAAGCAGAAGGCTTATGGACACCAGGAACAGATCAA
TATGACTTCTCAGGTGAAATTGAGCGAAACGCATCGATAAATATTATCGT
TTCTCTTGTACCGACGGTACCTGGTGAGCAGCAATGGTTGGAAATTAAGA
AGCTGATAAGCACAAAGGTCAAAGAATACCAGTTGGATTGCCAGCTTATT
CATGTAATGTCTTGGGAAGTGCAACCACAAATCTTTAGCGTCGATGATTA
TGCAAATAGCGATGAACAGCTTAGAAGCTAG
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protein sequence of Ggra1687.t1

>Ggra1687.t1 ID=Ggra1687.t1|Name=Ggra1687.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MAVDIWGFAGRRAANFLIVVIAVRALQEIFDELLEVLVDFTVDEGVGHGG
HGDEEYAAVDRVSNNFASTFKDDCSAAIARVSGGLTCWEAEGLWTPGTDQ
YDFSGEIERNASINIIVSLVPTVPGEQQWLEIKKLISTKVKEYQLDCQLI
HVMSWEVQPQIFSVDDYANSDEQLRS*
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mRNA from alignment at tig00000050_pilon:369377..372860+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1687.t1 ID=Ggra1687.t1|Name=Ggra1687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3484bp|location=Sequence derived from alignment at tig00000050_pilon:369377..372860+ (Gracilaria gracilis GNS1m male)
ATGGCGGTTGATATTTGGGGCTTTGCCGGGCGCAGAGCAGCCAATTTTCT
TATTGTCGTTATCGCTGTCAGAGCTCTCCAGGAGATCTTCGATGAGCTTC
TCGAAGTCCTCGTCGACTTCACTGTCGACGAAGGTGTGGGGCATGGCGGC
CATGGCGATGAGGAATATGCTGCTGTTGACCGGTGGGGATGACTGAAAAG
GAGTCAAATGACCAAAGCACCTATTTGGTGTGGACCATTTATTGCAGTAC
ACGTtgtatacgaatttggtgctttgctgctttgctacccacactggtgg
agatgctcttaTGACTCCCCCCCGGTTCCAAACTCGATTTATATACTGta
ttagccctttttaattaagagaaaacggctctctttttgaaacaagataa
gcgatttgctcgcaccttgtttaattagcgcatcacagaacggcttagtt
tgaaacagcgtgcaaaataacatagtgaaccaggggcgacttccaaaaat
cttagcttatttccatcagatggagttcgtcatccatcgtccttgaccaa
cccagagctcatcatacatggtgacatgtcgtcttccacgcccgttccac
ctcttgatcatatttccaacccatctggagtacaagcatgcccaaccgtc
ccacaatctgtccccaatgcggcgctttctggatcgcaaacaaaaccaaa
cgaacgcgcacctcaacggttcgtgatgaacaagatcgaaaaagaatggg
tgctgcgcactttgatcgttcacagtgctccttcgcaaaagctgaaaacc
ctggacaagacgtgtgaaaccgtagcaagtcgtgcgcgcagtaaacacgt
tccagacagtgctcttgttccggagcaggacaaatatggtatgtgttggc
gtcgcagctacatgaagtggatcactgcggacaacgtttgcaacacagaa
aattctgttaatgacttgtttaagaaggtcattgtctctgcagacagttt
gggtgacagtgagggcccccttgtactcgcgcgtcacagagaaaatgacg
ctcaacacatgcttgatcaggcagttgccgattataagcatgaaatgtcg
aaaagggtacaaactacggacgaaggtgcggagcgtgtgttgtcacgagc
acaagaatcaagagcacagaaagcaaaacgcgaacgagaaagacgagaaa
catttgagaagaataagaaaaggcgtgaacaggcacgcttggcacgtgag
aagagaagaacagcagcagcactgcagaacctatgtgctcaaacccgcat
agcgaatgctgcaattgctagcgccgctctgcagcggaggcagagtgaac
agttcggcattttggtggacctctttgctcgcagcaacaacctgcaggca
caggagcctgtaacgccactaccgccgccgttgccgtccgagatgttaac
gattgacgcaaatttgctggaactttgtgacgcagaccctggaaccagtg
cggtagagagtggtccggaacatttcacagctgcaacagcttcctctgga
acaagcgacgctgcgcaattcacccaagcggaacacgattaagctgctct
gacctccttcttttgttcgcgccgtgcggagcgcgagcgcgaacatatga
ctcacatctcctctccgtcgtcctctattctctcttgggccgcaatgttc
tcttcatagcggcttctgggctgcagcgcaaaccctcttctatcgaactg
ccagttgcagagcatcgctaccgtagtgtacgcgataggaaagaggcttc
tctcaaacggccatcggtccaagaataaaggaaaccggttattgacaaac
cctgtaccccattcattgaccattctttgctttcgaatcaaactgttgta
ctccgtcttgtacatccagagggtactttcgttcttttcgtacggaacga
cgaggtagccactaccagaaaaccccaagtcagccattccatgctgccga
ggtgaaagatacaaacttggttcacgaaaacattctgagttcgtgtacat
gtttcgatcactttcggctcctttgtccgatatctctacgcgtataatgc
gaccgaacaaatcgcaaaacacgagaatagggaacgcatgtgatttattg
tagccgtcttaagcacgctcctgttcattgttatcctttggtctccatct
cttgttcttgttaccatacaagaagaagacacacttcagaaaaccaatta
acaaaccctccattctctgcctgccagcgtcatcaggccaacggttaagc
ttcggttcttgttcttctaaggtcttaaacgaagcatacaacacatgccg
aaagtagttggacacagttccgggtgagatgctataaaagtatgccactt
tctgtataccacagcttccttcgttcaaacctcctaagatgtccaagaac
ataaacaaaatctctttcgtagtgaaccgacgacgtctggatactcttct
ctggccctgatattcatttcaaatagccaaaggctgcgccagtgtgtctt
gcactaacgcataaagtgcgtcaaagtcttcccgcgacatgtgcacagtc
ttcttgaacagctgtatatctggatcgttttcgcagatatctcggtagat
atggttattaacacgctttgcatagagagcttttgttccctctttcgggt
ttcctctacctggttttgctggagtttcctcattttcctcaggttcgagg
tttgtgcgacgtgctgcggcaagcactgccccctgattcaccagtgtgcg
cgtgtgggcagcagtttgggacatctgctcgagaagcagaagaggaagga
gcagtttgtttccctccatgttaagatgtgactcgtaccccgcctgaatc
ttcaggcccaacgtgtacatcatctaaggagatcgctcttattttgaaaa
ttacaaacggtttggattcgaggttttcgcgcttaggctcagaatccttc
attaaaaagggctaTTGCTAAAACTTTGTCCGGACGCTCCCAGTCTTGAT
TCCAGTTTTGTTCACAGCGCACATTTGAAATGACAAAACTCGGTACACGT
ACCTATTATCATGTTGCTATCGGTTTACCTAGAAGCGTGAGTAACAACTT
TGCTTCGACCTTCAAGGATGATTGCTCTGCTGCTATTGCACGTGTGAGTG
GAGGATTGACTTGCTGGGAAGCAGAAGGCTTATGGACACCAGGAACAGAT
CAATATGACTTCTCAGGTGAAATTGAGCGAAACGCATCGATAAATATTAT
CGTTTCTCTTGTACCGACGGTACCTGGTGAGCAGCAATGGTTGGAAATTA
AGAAGCTGATAAGCACAAAGGTCAAAGAATACCAGTTGGATTGCCAGCTT
ATTCATGTAATGTCTTGGGAAGTGCAACCACAAATCTTTAGCGTCGATGA
TTATGCAAATAGCGATGAACAGCTTAGAAGCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:369377..372860+

>Ggra1687.t1 ID=Ggra1687.t1|Name=Ggra1687.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000050_pilon:369377..372860+ (Gracilaria gracilis GNS1m male)
ATGGCGGTTGATATTTGGGGCTTTGCCGGGCGCAGAGCAGCCAATTTTCT
TATTGTCGTTATCGCTGTCAGAGCTCTCCAGGAGATCTTCGATGAGCTTC
TCGAAGTCCTCGTCGACTTCACTGTCGACGAAGGTGTGGGGCATGGCGGC
CATGGCGATGAGGAATATGCTGCTGTTGACCGCGTGAGTAACAACTTTGC
TTCGACCTTCAAGGATGATTGCTCTGCTGCTATTGCACGTGTGAGTGGAG
GATTGACTTGCTGGGAAGCAGAAGGCTTATGGACACCAGGAACAGATCAA
TATGACTTCTCAGGTGAAATTGAGCGAAACGCATCGATAAATATTATCGT
TTCTCTTGTACCGACGGTACCTGGTGAGCAGCAATGGTTGGAAATTAAGA
AGCTGATAAGCACAAAGGTCAAAGAATACCAGTTGGATTGCCAGCTTATT
CATGTAATGTCTTGGGAAGTGCAACCACAAATCTTTAGCGTCGATGATTA
TGCAAATAGCGATGAACAGCTTAGAAGCTAG
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