Ggra1685.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1685.t1
Unique NameGgra1685.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:347417..349155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1685Ggra1685Gracilaria gracilis GNS1m malegenetig00000050_pilon 347417..349155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1Ggra1685.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 347417..349155 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1.stop1Ggra1685.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 347417..347419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1.CDS1Ggra1685.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 347417..347950 -
Ggra1685.t1.CDS2Ggra1685.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 348039..348230 -
Ggra1685.t1.CDS3Ggra1685.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 349009..349155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1.exon1Ggra1685.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 347417..347950 -
Ggra1685.t1.exon2Ggra1685.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 348039..348230 -
Ggra1685.t1.exon3Ggra1685.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 349009..349155 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1.intron1Ggra1685.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 347951..348038 -
Ggra1685.t1.intron2Ggra1685.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 348231..349008 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1685.t1.start1Ggra1685.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 349153..349155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1685.t1 ID=Ggra1685.t1|Name=Ggra1685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MTWCVSAFLPPPLARARFPALPNQPHTRCAAQCTAPPPRQPRHNEPFGGY
CVPPSAKKRPRESDEHARAAKKYRDDKCSAVAVTSPTAVSNVLTTPPVAP
ATARANGTRSGSETEDGDGMNSTAGYECDQCRAKFCRKHHRDRHVQNIHE
GRRPWTCEQCGFAFHQKPNLERHIMTVHEEQKPFRCNVCGVSFGRKGVLK
KHVQTVHEQSRKFECDKCSLHFGLKSDLKRHVQSVHQKQRPFVCETCSAS
FGRKSDLKRHTLSLHPGVALPTRKRTAAAAAAAPPSPRAR*
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spliced messenger RNA

>Ggra1685.t1 ID=Ggra1685.t1|Name=Ggra1685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000050_pilon:347417..349155- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGGTGCGTCAGCGCATTCCTACCGCCGCCGCTGGCGCGCGCGCG
CTTTCCGGCGCTGCCCAATCAGCCGCACACACGTTGCGCTGCGCAGTGCA
CGGCACCACCGCCGCGGCAGCCGCGTCACAACGAGCCGTTTGGTGGATAT
TGCGTGCCTCCGTCGGCTAAGAAGAGGCCGAGGGAGAGTGACGAGCATGC
GCGCGCAGCTAAGAAGTATCGCGATGATAAGTGCTCTGCTGTGGCCGTTA
CCAGCCCTACGGCCGTGTCCAACGTGCTGACCACACCGCCTGTGGCGCCG
GCTACTGCGCGTGCTAACGGCACACGTTCTGGTTCGGAGACCGAGGATGG
GGACGGAATGAATTCGACGGCGGGCTACGAGTGCGATCAATGCCGCGCAA
AGTTCTGTCGCAAGCACCACCGCGACCGCCATGTGCAGAACATCCACGAA
GGACGGCGGCCGTGGACGTGCGAGCAGTGCGGCTTTGCGTTCCACCAAAA
GCCTAATCTGGAACGGCACATCATGACGGTGCACGAGGAGCAGAAGCCGT
TCCGGTGCAACGTGTGCGGCGTCTCGTTTGGACGCAAGGGCGTGCTGAAG
AAGCACGTGCAGACGGTGCACGAGCAGAGCCGCAAGTTCGAGTGCGACAA
GTGCTCGCTTCACTTTGGGCTCAAGTCGGACCTGAAGCGGCACGTACAGT
CGGTGCACCAGAAGCAGCGGCCGTTTGTGTGCGAGACGTGCTCGGCGTCG
TTTGGACGCAAGTCGGACCTCAAGCGACATACGCTGTCGCTGCACCCGGG
CGTGGCGCTGCCGACGAGGAAGAGGACGGCGGCAGCAGCGGCAGCGGCGC
CGCCGTCGCCGCGCGCGCGCTGA
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protein sequence of Ggra1685.t1

>Ggra1685.t1 ID=Ggra1685.t1|Name=Ggra1685.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MTWCVSAFLPPPLARARFPALPNQPHTRCAAQCTAPPPRQPRHNEPFGGY
CVPPSAKKRPRESDEHARAAKKYRDDKCSAVAVTSPTAVSNVLTTPPVAP
ATARANGTRSGSETEDGDGMNSTAGYECDQCRAKFCRKHHRDRHVQNIHE
GRRPWTCEQCGFAFHQKPNLERHIMTVHEEQKPFRCNVCGVSFGRKGVLK
KHVQTVHEQSRKFECDKCSLHFGLKSDLKRHVQSVHQKQRPFVCETCSAS
FGRKSDLKRHTLSLHPGVALPTRKRTAAAAAAAPPSPRAR*
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mRNA from alignment at tig00000050_pilon:347417..349155-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1685.t1 ID=Ggra1685.t1|Name=Ggra1685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1739bp|location=Sequence derived from alignment at tig00000050_pilon:347417..349155- (Gracilaria gracilis GNS1m male)
ATGACTTGGTGCGTCAGCGCATTCCTACCGCCGCCGCTGGCGCGCGCGCG
CTTTCCGGCGCTGCCCAATCAGCCGCACACACGTTGCGCTGCGCAGTGCA
CGGCACCACCGCCGCGGCAGCCGCGTCACAACGAGCCGTTTGGTGGAGTA
CGTGCGCGCCGCACGCGCGCGCGTCACGCAGTGGCCGCGCCCGTCCGGCG
CTGTGTGCCAGCCGCGCGTCCGCGCGCGCCGCCGTGCCACGCGCAGCGCT
CCGCCGTGTCCGCCAGCGACACGCGCGCCCAACCGTCCGTCGTGCTGCCC
GCGCGTCGCTGCCGCCGCTTTTTCAACCGCCCCCCTCCCCGCGCATACTC
GTCCCTTCCACTCCGCTCTCCTCTTATTAGCCGCCCCCTTCCTCCCCTGC
GCCACTGCCCTTCCGCCTCCGCCCCGCCCCCCCACCTCCTCCTTCCCCAC
TTGTACCGCGCTTTCCTTTGCCCGCCCCACCGCTGTTCCACTCCATCCCC
GCTACCTCTGCAAAGCCATGTCGTGCATGCGCCACCTGCTCGACTTTCGC
GCGCGCGAGTTTGCCACCTTCATGCAGCTGCGTGCCACCGCCGCCTCCCG
CCGCCGCCTCAAGCCCGATCCATCGCAGCCGCTCGCCTTTTCGTGGGCGC
TACCCGTAGCACCGCCGCCGCCACCCGCCTTACCGCTGCCACCGCTGCCG
TCGCTACCACAGCTGTTACAAGCATCGGCGCCACTGTCGGCCCCGTTGGC
GTCGTCGGCCGCCGTCAACACGCTGCGACCTTCGGCGCGTCTGCCGCTCA
CGCCGCCGCTTGCGGCACGCCGCTCGCCGCGCAGGGGCGTTGGCGCTGGC
GTTGGCGCTGGCATAGGCGCTGGCGCTGGAGCAGGCGCTGGCGCTGGAGC
AGGCGCTGGCGCTGTTTTTCCCAAGTATTGCGTGCCTCCGTCGGCTAAGA
AGAGGCCGAGGGAGAGTGACGAGCATGCGCGCGCAGCTAAGAAGTATCGC
GATGATAAGTGCTCTGCTGTGGCCGTTACCAGCCCTACGGCCGTGTCCAA
CGTGCTGACCACACCGCCTGTGGCGCCGGCTACTGCGCGTGCTAACGGCA
CACGTTCTGGTTCGGAGGTGAGTTGTGCTTGCTGTTTGTACGCGTTGACT
GCTTTACTGACTGTGACTAATGCATTGCGTTGGCTCGTTTGTGCGCCGGA
AACAGACCGAGGATGGGGACGGAATGAATTCGACGGCGGGCTACGAGTGC
GATCAATGCCGCGCAAAGTTCTGTCGCAAGCACCACCGCGACCGCCATGT
GCAGAACATCCACGAAGGACGGCGGCCGTGGACGTGCGAGCAGTGCGGCT
TTGCGTTCCACCAAAAGCCTAATCTGGAACGGCACATCATGACGGTGCAC
GAGGAGCAGAAGCCGTTCCGGTGCAACGTGTGCGGCGTCTCGTTTGGACG
CAAGGGCGTGCTGAAGAAGCACGTGCAGACGGTGCACGAGCAGAGCCGCA
AGTTCGAGTGCGACAAGTGCTCGCTTCACTTTGGGCTCAAGTCGGACCTG
AAGCGGCACGTACAGTCGGTGCACCAGAAGCAGCGGCCGTTTGTGTGCGA
GACGTGCTCGGCGTCGTTTGGACGCAAGTCGGACCTCAAGCGACATACGC
TGTCGCTGCACCCGGGCGTGGCGCTGCCGACGAGGAAGAGGACGGCGGCA
GCAGCGGCAGCGGCGCCGCCGTCGCCGCGCGCGCGCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:347417..349155-

>Ggra1685.t1 ID=Ggra1685.t1|Name=Ggra1685.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000050_pilon:347417..349155- (Gracilaria gracilis GNS1m male)
ATGACTTGGTGCGTCAGCGCATTCCTACCGCCGCCGCTGGCGCGCGCGCG
CTTTCCGGCGCTGCCCAATCAGCCGCACACACGTTGCGCTGCGCAGTGCA
CGGCACCACCGCCGCGGCAGCCGCGTCACAACGAGCCGTTTGGTGGATAT
TGCGTGCCTCCGTCGGCTAAGAAGAGGCCGAGGGAGAGTGACGAGCATGC
GCGCGCAGCTAAGAAGTATCGCGATGATAAGTGCTCTGCTGTGGCCGTTA
CCAGCCCTACGGCCGTGTCCAACGTGCTGACCACACCGCCTGTGGCGCCG
GCTACTGCGCGTGCTAACGGCACACGTTCTGGTTCGGAGACCGAGGATGG
GGACGGAATGAATTCGACGGCGGGCTACGAGTGCGATCAATGCCGCGCAA
AGTTCTGTCGCAAGCACCACCGCGACCGCCATGTGCAGAACATCCACGAA
GGACGGCGGCCGTGGACGTGCGAGCAGTGCGGCTTTGCGTTCCACCAAAA
GCCTAATCTGGAACGGCACATCATGACGGTGCACGAGGAGCAGAAGCCGT
TCCGGTGCAACGTGTGCGGCGTCTCGTTTGGACGCAAGGGCGTGCTGAAG
AAGCACGTGCAGACGGTGCACGAGCAGAGCCGCAAGTTCGAGTGCGACAA
GTGCTCGCTTCACTTTGGGCTCAAGTCGGACCTGAAGCGGCACGTACAGT
CGGTGCACCAGAAGCAGCGGCCGTTTGTGTGCGAGACGTGCTCGGCGTCG
TTTGGACGCAAGTCGGACCTCAAGCGACATACGCTGTCGCTGCACCCGGG
CGTGGCGCTGCCGACGAGGAAGAGGACGGCGGCAGCAGCGGCAGCGGCGC
CGCCGTCGCCGCGCGCGCGCTGA
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