Ggra1684.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1684.t1
Unique Name	Ggra1684.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:345125..346618 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1684	Ggra1684	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 345125..346618 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1684.t1.stop1	Ggra1684.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 345125..345127 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1684.t1.CDS1	Ggra1684.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 345125..346618 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1684.t1.exon1	Ggra1684.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 345125..346618 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1684.t1.start1	Ggra1684.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 346616..346618 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1684.t1	Ggra1684.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 345125..346618 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:345125..346618-
coding sequence from alignment at tig00000050_pilon:345125..346618-

mRNA sequence

>Ggra1684.t1 ID=Ggra1684.t1|Name=Ggra1684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MKRRLSHRAQARAVPKRHRRYRNNVAAKFCPGDVHGPRIPALLRQFAMQC
AVDCHHKWLQLLQTSCEKQGCLVRNCRTGVNFAQTHGAKSLIHSITMFLT
YYVPRKVYLQSDDEWRQLLAALYTFHNYCTRKRYIKDDHVLTTALYTLRN
FRICTIPQRITELATASYWTYLEQPPTPPTDPPGSAACERPAEPQPASSH
AFARLASAASDRRAHLSSQPMNGELHANAPSPATQRNDGNAHHSKSEPNV
EEHPFATTNDELVGKSHQQQAADELAADHSTGRAAEGNTKRDGSAGEEEE
EQQQAANEPTAIDSEWRPAEVDTEGNGLPDEVEQLQQAASEPVANDSAWR
PLAVDTKRNGLPDEVEQLQRAANEPAANDSAWRPVAVDTERNGLADEEGE
LQPDDTDCYDALLGGDMPLIVSQVMDDGWLLRSEDFDVDAEYTNAFLHLP
PDVAKMGMRGMSLSCFQIALRHGIWRPIRRDEIYIANAYPPDEMFYY*

spliced messenger RNA

>Ggra1684.t1 ID=Ggra1684.t1|Name=Ggra1684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:345125..346618- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGCGCCTGTCGCACCGTGCGCAAGCTCGCGCCGTTCCAAAGCG
ACATCGACGCTACCGCAACAATGTCGCCGCCAAGTTCTGCCCCGGAGACG
TGCACGGGCCCCGCATCCCGGCCTTGTTGCGCCAGTTTGCCATGCAGTGC
GCCGTCGATTGCCACCACAAGTGGCTGCAGTTGCTGCAGACCTCGTGCGA
GAAGCAGGGCTGTCTGGTGCGAAACTGTCGCACCGGCGTCAACTTTGCGC
AGACCCACGGCGCGAAGAGCCTCATTCATTCCATCACCATGTTCCTCACC
TACTACGTGCCGCGCAAGGTGTACTTGCAGTCCGACGACGAGTGGCGACA
ACTGTTGGCCGCGCTTTATACCTTTCACAACTACTGCACCCGAAAGCGCT
ACATCAAGGATGATCACGTGCTCACCACCGCCTTGTATACGCTGCGCAAC
TTCCGCATCTGTACCATTCCGCAGCGCATCACCGAACTGGCCACCGCCAG
CTATTGGACCTACTTGGAACAACCGCCCACTCCGCCCACTGATCCGCCGG
GCTCGGCCGCCTGCGAGCGCCCCGCCGAGCCTCAACCTGCGTCCAGCCAC
GCGTTCGCGCGCCTCGCGAGCGCCGCCAGTGATCGCCGCGCGCACCTCAG
CTCGCAACCGATGAACGGAGAGCTGCATGCGAACGCGCCTTCACCCGCAA
CGCAGCGGAACGATGGCAATGCGCACCACTCCAAGAGCGAACCCAACGTT
GAGGAGCACCCTTTCGCAACAACGAATGACGAGCTCGTCGGAAAGAGTCA
TCAACAGCAGGCGGCTGATGAGCTAGCTGCGGACCACTCTACAGGACGAG
CTGCGGAGGGGAACACAAAACGAGACGGCTCGGCCGGTGAGGAGGAGGAG
GAGCAGCAGCAGGCAGCAAATGAGCCAACCGCCATTGACTCTGAATGGCG
ACCTGCGGAGGTGGACACGGAGGGGAACGGCTTGCCCGATGAGGTGGAGC
AGCTGCAGCAGGCAGCGAGCGAGCCAGTCGCGAATGACTCTGCATGGCGA
CCTTTGGCCGTGGACACGAAGCGGAACGGCTTGCCCGATGAGGTGGAGCA
GCTGCAGCGGGCAGCGAACGAGCCAGCCGCGAATGACTCCGCATGGCGAC
CTGTGGCGGTGGACACGGAGCGGAACGGCTTGGCCGACGAGGAGGGGGAG
CTGCAGCCGGATGATACCGATTGCTACGATGCGTTGCTGGGTGGAGATAT
GCCGCTCATTGTTTCACAAGTTATGGACGATGGTTGGCTGTTACGGTCGG
AAGATTTCGATGTGGATGCTGAGTATACTAATGCTTTTCTGCATCTCCCG
CCTGACGTTGCAAAGATGGGGATGCGAGGCATGTCGTTGTCGTGCTTTCA
GATAGCGCTACGACATGGCATTTGGAGACCGATTCGACGTGATGAGATAT
ACATTGCTAATGCATATCCACCTGATGAAATGTTCTACTATTGA

protein sequence of Ggra1684.t1

>Ggra1684.t1 ID=Ggra1684.t1|Name=Ggra1684.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MKRRLSHRAQARAVPKRHRRYRNNVAAKFCPGDVHGPRIPALLRQFAMQC
AVDCHHKWLQLLQTSCEKQGCLVRNCRTGVNFAQTHGAKSLIHSITMFLT
YYVPRKVYLQSDDEWRQLLAALYTFHNYCTRKRYIKDDHVLTTALYTLRN
FRICTIPQRITELATASYWTYLEQPPTPPTDPPGSAACERPAEPQPASSH
AFARLASAASDRRAHLSSQPMNGELHANAPSPATQRNDGNAHHSKSEPNV
EEHPFATTNDELVGKSHQQQAADELAADHSTGRAAEGNTKRDGSAGEEEE
EQQQAANEPTAIDSEWRPAEVDTEGNGLPDEVEQLQQAASEPVANDSAWR
PLAVDTKRNGLPDEVEQLQRAANEPAANDSAWRPVAVDTERNGLADEEGE
LQPDDTDCYDALLGGDMPLIVSQVMDDGWLLRSEDFDVDAEYTNAFLHLP
PDVAKMGMRGMSLSCFQIALRHGIWRPIRRDEIYIANAYPPDEMFYY*

mRNA from alignment at tig00000050_pilon:345125..346618-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1684.t1 ID=Ggra1684.t1|Name=Ggra1684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:345125..346618- (Gracilaria gracilis GNS1m male)
ATGAAGAGGCGCCTGTCGCACCGTGCGCAAGCTCGCGCCGTTCCAAAGCG
ACATCGACGCTACCGCAACAATGTCGCCGCCAAGTTCTGCCCCGGAGACG
TGCACGGGCCCCGCATCCCGGCCTTGTTGCGCCAGTTTGCCATGCAGTGC
GCCGTCGATTGCCACCACAAGTGGCTGCAGTTGCTGCAGACCTCGTGCGA
GAAGCAGGGCTGTCTGGTGCGAAACTGTCGCACCGGCGTCAACTTTGCGC
AGACCCACGGCGCGAAGAGCCTCATTCATTCCATCACCATGTTCCTCACC
TACTACGTGCCGCGCAAGGTGTACTTGCAGTCCGACGACGAGTGGCGACA
ACTGTTGGCCGCGCTTTATACCTTTCACAACTACTGCACCCGAAAGCGCT
ACATCAAGGATGATCACGTGCTCACCACCGCCTTGTATACGCTGCGCAAC
TTCCGCATCTGTACCATTCCGCAGCGCATCACCGAACTGGCCACCGCCAG
CTATTGGACCTACTTGGAACAACCGCCCACTCCGCCCACTGATCCGCCGG
GCTCGGCCGCCTGCGAGCGCCCCGCCGAGCCTCAACCTGCGTCCAGCCAC
GCGTTCGCGCGCCTCGCGAGCGCCGCCAGTGATCGCCGCGCGCACCTCAG
CTCGCAACCGATGAACGGAGAGCTGCATGCGAACGCGCCTTCACCCGCAA
CGCAGCGGAACGATGGCAATGCGCACCACTCCAAGAGCGAACCCAACGTT
GAGGAGCACCCTTTCGCAACAACGAATGACGAGCTCGTCGGAAAGAGTCA
TCAACAGCAGGCGGCTGATGAGCTAGCTGCGGACCACTCTACAGGACGAG
CTGCGGAGGGGAACACAAAACGAGACGGCTCGGCCGGTGAGGAGGAGGAG
GAGCAGCAGCAGGCAGCAAATGAGCCAACCGCCATTGACTCTGAATGGCG
ACCTGCGGAGGTGGACACGGAGGGGAACGGCTTGCCCGATGAGGTGGAGC
AGCTGCAGCAGGCAGCGAGCGAGCCAGTCGCGAATGACTCTGCATGGCGA
CCTTTGGCCGTGGACACGAAGCGGAACGGCTTGCCCGATGAGGTGGAGCA
GCTGCAGCGGGCAGCGAACGAGCCAGCCGCGAATGACTCCGCATGGCGAC
CTGTGGCGGTGGACACGGAGCGGAACGGCTTGGCCGACGAGGAGGGGGAG
CTGCAGCCGGATGATACCGATTGCTACGATGCGTTGCTGGGTGGAGATAT
GCCGCTCATTGTTTCACAAGTTATGGACGATGGTTGGCTGTTACGGTCGG
AAGATTTCGATGTGGATGCTGAGTATACTAATGCTTTTCTGCATCTCCCG
CCTGACGTTGCAAAGATGGGGATGCGAGGCATGTCGTTGTCGTGCTTTCA
GATAGCGCTACGACATGGCATTTGGAGACCGATTCGACGTGATGAGATAT
ACATTGCTAATGCATATCCACCTGATGAAATGTTCTACTATTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:345125..346618-

>Ggra1684.t1 ID=Ggra1684.t1|Name=Ggra1684.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000050_pilon:345125..346618- (Gracilaria gracilis GNS1m male)
ATGAAGAGGCGCCTGTCGCACCGTGCGCAAGCTCGCGCCGTTCCAAAGCG
ACATCGACGCTACCGCAACAATGTCGCCGCCAAGTTCTGCCCCGGAGACG
TGCACGGGCCCCGCATCCCGGCCTTGTTGCGCCAGTTTGCCATGCAGTGC
GCCGTCGATTGCCACCACAAGTGGCTGCAGTTGCTGCAGACCTCGTGCGA
GAAGCAGGGCTGTCTGGTGCGAAACTGTCGCACCGGCGTCAACTTTGCGC
AGACCCACGGCGCGAAGAGCCTCATTCATTCCATCACCATGTTCCTCACC
TACTACGTGCCGCGCAAGGTGTACTTGCAGTCCGACGACGAGTGGCGACA
ACTGTTGGCCGCGCTTTATACCTTTCACAACTACTGCACCCGAAAGCGCT
ACATCAAGGATGATCACGTGCTCACCACCGCCTTGTATACGCTGCGCAAC
TTCCGCATCTGTACCATTCCGCAGCGCATCACCGAACTGGCCACCGCCAG
CTATTGGACCTACTTGGAACAACCGCCCACTCCGCCCACTGATCCGCCGG
GCTCGGCCGCCTGCGAGCGCCCCGCCGAGCCTCAACCTGCGTCCAGCCAC
GCGTTCGCGCGCCTCGCGAGCGCCGCCAGTGATCGCCGCGCGCACCTCAG
CTCGCAACCGATGAACGGAGAGCTGCATGCGAACGCGCCTTCACCCGCAA
CGCAGCGGAACGATGGCAATGCGCACCACTCCAAGAGCGAACCCAACGTT
GAGGAGCACCCTTTCGCAACAACGAATGACGAGCTCGTCGGAAAGAGTCA
TCAACAGCAGGCGGCTGATGAGCTAGCTGCGGACCACTCTACAGGACGAG
CTGCGGAGGGGAACACAAAACGAGACGGCTCGGCCGGTGAGGAGGAGGAG
GAGCAGCAGCAGGCAGCAAATGAGCCAACCGCCATTGACTCTGAATGGCG
ACCTGCGGAGGTGGACACGGAGGGGAACGGCTTGCCCGATGAGGTGGAGC
AGCTGCAGCAGGCAGCGAGCGAGCCAGTCGCGAATGACTCTGCATGGCGA
CCTTTGGCCGTGGACACGAAGCGGAACGGCTTGCCCGATGAGGTGGAGCA
GCTGCAGCGGGCAGCGAACGAGCCAGCCGCGAATGACTCCGCATGGCGAC
CTGTGGCGGTGGACACGGAGCGGAACGGCTTGGCCGACGAGGAGGGGGAG
CTGCAGCCGGATGATACCGATTGCTACGATGCGTTGCTGGGTGGAGATAT
GCCGCTCATTGTTTCACAAGTTATGGACGATGGTTGGCTGTTACGGTCGG
AAGATTTCGATGTGGATGCTGAGTATACTAATGCTTTTCTGCATCTCCCG
CCTGACGTTGCAAAGATGGGGATGCGAGGCATGTCGTTGTCGTGCTTTCA
GATAGCGCTACGACATGGCATTTGGAGACCGATTCGACGTGATGAGATAT
ACATTGCTAATGCATATCCACCTGATGAAATGTTCTACTATTGA