Ggra1683.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1683.t1
Unique NameGgra1683.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:341933..343555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO36083
Preferred namePRKCSH
PFAMsEF-hand_5,PRKCSH,PRKCSH-like,PRKCSH_1
Max annot lvl33208|Metazoa
KEGG koko:K08288
KEGG Pathwayko04141,map04141
GOsGO:0001655,GO:0001701,GO:0001889,GO:0003674,GO:0003676,GO:0003723,GO:0005080,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006464,GO:0006491,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009100,GO:0009790,GO:0009792,GO:0009987,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0016043,GO:0017177,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022607,GO:0023052,GO:0030154,GO:0031344,GO:0031345,GO:0031974,GO:0032501,GO:0032502,GO:0032991,GO:0035556,GO:0036211,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044325,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046872,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051219,GO:0051239,GO:0051241,GO:0051259,GO:0051291,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0061008,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072001,GO:0097159,GO:0120035,GO:1901135,GO:1901363,GO:1901564,GO:2000026
Evalue2.97e-30
EggNOG OGsKOG2397@1|root,KOG2397@2759|Eukaryota,38EUH@33154|Opisthokonta,3BAI0@33208|Metazoa
DescriptionN-glycan processing
COG categoryT
BRITEko00000,ko00001,ko04091
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1683Ggra1683Gracilaria gracilis GNS1m malegenetig00000050_pilon 341933..343555 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1683.t1.start1Ggra1683.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 341933..341935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1683.t1.CDS1Ggra1683.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 341933..343555 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1683.t1.exon1Ggra1683.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 341933..343555 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1683.t1.stop1Ggra1683.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 343553..343555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1683.t1Ggra1683.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 341933..343555 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1683.t1 ID=Ggra1683.t1|Name=Ggra1683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MSPGVVTTLLISLLLISLTNCTHVCILRDAPDLPAQPLPDHRINDDYCDC
ADASDENRTSACSNGFFLCKNVHYRPVQIYSSWVHDGSCDCCDGSDEPPG
SCPDTCAALRAEHLKEATLRADIVRRGIATRNNYVRDVEKSLKDESYELK
KLEKQLASIERQLKSHEKRAEVLRKRRDWENGIKQTSTDDSSSSSEAPPE
DHHYEAEHDHDFDDGEMRDYDGEDDYEPKYEDEHDDDEGVDEVLARGEDA
EMDPFIGEDEDVGEIFEDVLEEQADDGATADPGIEDQAAEPVSSSENEPS
STSTSAITQDAEPKEVPEPSDNVDVDSLCAELESSSPNWFVRRVVYFKAL
LLSKMRRFVPEKIISSISSQSSDLNTCISKADNAKWALDSKKREIQGKID
NLKKKDSIDFGADNALRKLYGSCTKGKVTQYEFEICVFDTVRQYENGASI
AQLGRFDGWEGEGKDRVMKYSNGDTCWNGPQRSIKVELLCSDKEEVVSVD
EPNRCTYRMKFKTPAVCEKYMVDEIMADFSNPGSEGKQEL*
back to top

spliced messenger RNA

>Ggra1683.t1 ID=Ggra1683.t1|Name=Ggra1683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:341933..343555+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCAGGGGTGGTCACCACGCTGCTCATCTCTCTTCTTCTAATCTC
TTTAACTAACTGTACTCACGTGTGCATTCTACGTGACGCCCCCGATCTAC
CCGCACAGCCGTTGCCAGATCACCGTATCAATGATGACTACTGCGACTGT
GCAGACGCTTCCGATGAGAATCGCACGTCTGCATGTTCCAATGGCTTCTT
TTTATGCAAGAATGTGCACTATCGCCCAGTACAGATCTATTCGTCCTGGG
TCCACGACGGATCGTGCGATTGCTGTGACGGTTCAGATGAACCTCCCGGA
TCTTGCCCCGACACTTGTGCTGCGCTACGCGCAGAACATCTCAAAGAGGC
TACACTAAGAGCAGATATAGTCCGACGTGGTATAGCCACTAGGAACAACT
ATGTACGAGATGTCGAAAAAAGTTTGAAGGACGAGAGTTACGAATTAAAG
AAGCTGGAGAAACAACTAGCCAGCATAGAACGACAGTTAAAGAGTCACGA
GAAGCGGGCCGAGGTACTTCGGAAGCGACGAGATTGGGAGAATGGGATCA
AACAAACATCAACCGATGACTCCTCATCGTCCTCCGAGGCACCTCCGGAA
GATCACCACTATGAAGCAGAGCACGATCACGACTTCGACGATGGTGAGAT
GCGGGACTAcgatggagaagatgattatgagccaaagtatgaagatgaac
atgatgatgatgaaggggtcgatgaagttCTGGCCAGAGGGGAAGATGCC
GAAATGGATCCCTTTATAGGTGAGGATGAAGACGTTGGGGAAATTTTCGA
AGATGTGCTTGAAGAGCAAGCCGACGACGGGGCTACAGCCGATCCAGGAA
TTGAAGATCAGGCAGCTGAACCAGTGTCGAGCAGTGAGAACGAGCCTTCC
TCAACCTCAACCTCTGCAATCACACAGGACGCAGAACCCAAAGAAGTGCC
AGAGCCATCGGATAATGTTGATGTAGACTCTCTCTGCGCGGAACTTGAGA
GCAGCAGTCCAAACTGGTTTGTCCGTCGCGTTGTATACTTCAAAGCCCTG
TTACTAAGCAAGATGAGGCGCTTTGTACCGGAGAAAATCATATCTTCGAT
TTCTTCGCAATCGTCTGATCTCAACACTTGCATCAGCAAAGCTGACAACG
CCAAATGGGCATTGGATTCGAAGAAAAGAGAGATTCAAGGCAAGATTGAC
AACCTGAAAAAGAAGGATTCTATCGACTTTGGGGCCGACAACGCACTTCG
GAAATTGTATGGAAGCTGTACGAAGGGAAAGGTAACCCAGTATGAGTTTG
AGATTTGTGTGTTTGATACGGTTCGTCAGTACGAGAACGGTGCGTCGATT
GCGCAGCTGGGCCGATTTGATGGCTGGGAAGGTGAAGGAAAGGATCGTGT
CATGAAGTACAGCAATGGTGATACATGTTGGAATGGGCCGCAAAGAAGCA
TTAAGGTTGAGTTGTTGTGTAGCGACAAGGAGGAAGTGGTCAGTGTAGAT
GAACCGAATAGATGTACTTATCGAATGAAGTTTAAGACACCGGCCGTTTG
TGAGAAGTACATGGTTGATGAGATCATGGCCGACTTCAGCAATCCAGGTA
GCGAGGGGAAACAAGAACTATAG
back to top

protein sequence of Ggra1683.t1

>Ggra1683.t1 ID=Ggra1683.t1|Name=Ggra1683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MSPGVVTTLLISLLLISLTNCTHVCILRDAPDLPAQPLPDHRINDDYCDC
ADASDENRTSACSNGFFLCKNVHYRPVQIYSSWVHDGSCDCCDGSDEPPG
SCPDTCAALRAEHLKEATLRADIVRRGIATRNNYVRDVEKSLKDESYELK
KLEKQLASIERQLKSHEKRAEVLRKRRDWENGIKQTSTDDSSSSSEAPPE
DHHYEAEHDHDFDDGEMRDYDGEDDYEPKYEDEHDDDEGVDEVLARGEDA
EMDPFIGEDEDVGEIFEDVLEEQADDGATADPGIEDQAAEPVSSSENEPS
STSTSAITQDAEPKEVPEPSDNVDVDSLCAELESSSPNWFVRRVVYFKAL
LLSKMRRFVPEKIISSISSQSSDLNTCISKADNAKWALDSKKREIQGKID
NLKKKDSIDFGADNALRKLYGSCTKGKVTQYEFEICVFDTVRQYENGASI
AQLGRFDGWEGEGKDRVMKYSNGDTCWNGPQRSIKVELLCSDKEEVVSVD
EPNRCTYRMKFKTPAVCEKYMVDEIMADFSNPGSEGKQEL*
back to top

mRNA from alignment at tig00000050_pilon:341933..343555+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1683.t1 ID=Ggra1683.t1|Name=Ggra1683.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:341933..343555+ (Gracilaria gracilis GNS1m male)
ATGTCGCCAGGGGTGGTCACCACGCTGCTCATCTCTCTTCTTCTAATCTC
TTTAACTAACTGTACTCACGTGTGCATTCTACGTGACGCCCCCGATCTAC
CCGCACAGCCGTTGCCAGATCACCGTATCAATGATGACTACTGCGACTGT
GCAGACGCTTCCGATGAGAATCGCACGTCTGCATGTTCCAATGGCTTCTT
TTTATGCAAGAATGTGCACTATCGCCCAGTACAGATCTATTCGTCCTGGG
TCCACGACGGATCGTGCGATTGCTGTGACGGTTCAGATGAACCTCCCGGA
TCTTGCCCCGACACTTGTGCTGCGCTACGCGCAGAACATCTCAAAGAGGC
TACACTAAGAGCAGATATAGTCCGACGTGGTATAGCCACTAGGAACAACT
ATGTACGAGATGTCGAAAAAAGTTTGAAGGACGAGAGTTACGAATTAAAG
AAGCTGGAGAAACAACTAGCCAGCATAGAACGACAGTTAAAGAGTCACGA
GAAGCGGGCCGAGGTACTTCGGAAGCGACGAGATTGGGAGAATGGGATCA
AACAAACATCAACCGATGACTCCTCATCGTCCTCCGAGGCACCTCCGGAA
GATCACCACTATGAAGCAGAGCACGATCACGACTTCGACGATGGTGAGAT
GCGGGACTAcgatggagaagatgattatgagccaaagtatgaagatgaac
atgatgatgatgaaggggtcgatgaagttCTGGCCAGAGGGGAAGATGCC
GAAATGGATCCCTTTATAGGTGAGGATGAAGACGTTGGGGAAATTTTCGA
AGATGTGCTTGAAGAGCAAGCCGACGACGGGGCTACAGCCGATCCAGGAA
TTGAAGATCAGGCAGCTGAACCAGTGTCGAGCAGTGAGAACGAGCCTTCC
TCAACCTCAACCTCTGCAATCACACAGGACGCAGAACCCAAAGAAGTGCC
AGAGCCATCGGATAATGTTGATGTAGACTCTCTCTGCGCGGAACTTGAGA
GCAGCAGTCCAAACTGGTTTGTCCGTCGCGTTGTATACTTCAAAGCCCTG
TTACTAAGCAAGATGAGGCGCTTTGTACCGGAGAAAATCATATCTTCGAT
TTCTTCGCAATCGTCTGATCTCAACACTTGCATCAGCAAAGCTGACAACG
CCAAATGGGCATTGGATTCGAAGAAAAGAGAGATTCAAGGCAAGATTGAC
AACCTGAAAAAGAAGGATTCTATCGACTTTGGGGCCGACAACGCACTTCG
GAAATTGTATGGAAGCTGTACGAAGGGAAAGGTAACCCAGTATGAGTTTG
AGATTTGTGTGTTTGATACGGTTCGTCAGTACGAGAACGGTGCGTCGATT
GCGCAGCTGGGCCGATTTGATGGCTGGGAAGGTGAAGGAAAGGATCGTGT
CATGAAGTACAGCAATGGTGATACATGTTGGAATGGGCCGCAAAGAAGCA
TTAAGGTTGAGTTGTTGTGTAGCGACAAGGAGGAAGTGGTCAGTGTAGAT
GAACCGAATAGATGTACTTATCGAATGAAGTTTAAGACACCGGCCGTTTG
TGAGAAGTACATGGTTGATGAGATCATGGCCGACTTCAGCAATCCAGGTA
GCGAGGGGAAACAAGAACTATAG
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:341933..343555+

>Ggra1683.t1 ID=Ggra1683.t1|Name=Ggra1683.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000050_pilon:341933..343555+ (Gracilaria gracilis GNS1m male)
ATGTCGCCAGGGGTGGTCACCACGCTGCTCATCTCTCTTCTTCTAATCTC
TTTAACTAACTGTACTCACGTGTGCATTCTACGTGACGCCCCCGATCTAC
CCGCACAGCCGTTGCCAGATCACCGTATCAATGATGACTACTGCGACTGT
GCAGACGCTTCCGATGAGAATCGCACGTCTGCATGTTCCAATGGCTTCTT
TTTATGCAAGAATGTGCACTATCGCCCAGTACAGATCTATTCGTCCTGGG
TCCACGACGGATCGTGCGATTGCTGTGACGGTTCAGATGAACCTCCCGGA
TCTTGCCCCGACACTTGTGCTGCGCTACGCGCAGAACATCTCAAAGAGGC
TACACTAAGAGCAGATATAGTCCGACGTGGTATAGCCACTAGGAACAACT
ATGTACGAGATGTCGAAAAAAGTTTGAAGGACGAGAGTTACGAATTAAAG
AAGCTGGAGAAACAACTAGCCAGCATAGAACGACAGTTAAAGAGTCACGA
GAAGCGGGCCGAGGTACTTCGGAAGCGACGAGATTGGGAGAATGGGATCA
AACAAACATCAACCGATGACTCCTCATCGTCCTCCGAGGCACCTCCGGAA
GATCACCACTATGAAGCAGAGCACGATCACGACTTCGACGATGGTGAGAT
GCGGGACTAcgatggagaagatgattatgagccaaagtatgaagatgaac
atgatgatgatgaaggggtcgatgaagttCTGGCCAGAGGGGAAGATGCC
GAAATGGATCCCTTTATAGGTGAGGATGAAGACGTTGGGGAAATTTTCGA
AGATGTGCTTGAAGAGCAAGCCGACGACGGGGCTACAGCCGATCCAGGAA
TTGAAGATCAGGCAGCTGAACCAGTGTCGAGCAGTGAGAACGAGCCTTCC
TCAACCTCAACCTCTGCAATCACACAGGACGCAGAACCCAAAGAAGTGCC
AGAGCCATCGGATAATGTTGATGTAGACTCTCTCTGCGCGGAACTTGAGA
GCAGCAGTCCAAACTGGTTTGTCCGTCGCGTTGTATACTTCAAAGCCCTG
TTACTAAGCAAGATGAGGCGCTTTGTACCGGAGAAAATCATATCTTCGAT
TTCTTCGCAATCGTCTGATCTCAACACTTGCATCAGCAAAGCTGACAACG
CCAAATGGGCATTGGATTCGAAGAAAAGAGAGATTCAAGGCAAGATTGAC
AACCTGAAAAAGAAGGATTCTATCGACTTTGGGGCCGACAACGCACTTCG
GAAATTGTATGGAAGCTGTACGAAGGGAAAGGTAACCCAGTATGAGTTTG
AGATTTGTGTGTTTGATACGGTTCGTCAGTACGAGAACGGTGCGTCGATT
GCGCAGCTGGGCCGATTTGATGGCTGGGAAGGTGAAGGAAAGGATCGTGT
CATGAAGTACAGCAATGGTGATACATGTTGGAATGGGCCGCAAAGAAGCA
TTAAGGTTGAGTTGTTGTGTAGCGACAAGGAGGAAGTGGTCAGTGTAGAT
GAACCGAATAGATGTACTTATCGAATGAAGTTTAAGACACCGGCCGTTTG
TGAGAAGTACATGGTTGATGAGATCATGGCCGACTTCAGCAATCCAGGTA
GCGAGGGGAAACAAGAACTATAG
back to top