Ggra1682.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1682.t1
Unique NameGgra1682.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:339545..341089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704453.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
Evalue6.52e-35
EggNOG OGs2E8WQ@1|root,2SFBB@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1682Ggra1682Gracilaria gracilis GNS1m malegenetig00000050_pilon 339545..341089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1Ggra1682.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 339545..341089 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1.stop1Ggra1682.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 339545..339547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1.CDS1Ggra1682.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 339545..341007 -
Ggra1682.t1.CDS2Ggra1682.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 341071..341089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1.exon1Ggra1682.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 339545..341007 -
Ggra1682.t1.exon2Ggra1682.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 341071..341089 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1.intron1Ggra1682.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 341008..341070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1682.t1.start1Ggra1682.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 341087..341089 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1682.t1 ID=Ggra1682.t1|Name=Ggra1682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MVQEDELQDRYALQQSIKAVERSIQITEDAIERERSSLQHDRFGRRASEM
PPCLRQLYESSQWRNQDVYIWPTVLQVSQDGHARAAVAENALRRLHYRPV
APIPAHPVLAEAAIKDAKEAVERVTTAVRKVVADKNRERHALRKELAKQY
MHRRKAWIKRLESQKASMTEEEKQSARRRDREILVATRSTAGNGGPQTPS
EIDVAFSEIEAAGGTCGGLERWGRSITGIPDHCPGYLPPASDGGMLIEDP
VAYHYCSRYINPWTRTEILLFLDKFSAHGKNFRRIASFFKHKTVEDVVRF
YFDNKIRLKLKQLLSKEGNIRKRNNKRMYLQRLAELPYESRSIKDNFIYE
PNLFSDSDNEEGRLTLRAEKMKQGALGRGWASTDRQALIFALCRFDVSDD
EESKPVPTVWSQIASAVGNKTPRQCRQFYFQHKAVLALDGYRPPKTKKRA
SPTAIDRVDEQPRKVQRRPKVVVHHSVETANTIHKMPTAMIAP*
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spliced messenger RNA

>Ggra1682.t1 ID=Ggra1682.t1|Name=Ggra1682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000050_pilon:339545..341089- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACAAGAAGACGAACTTCAAGATCGCTATGCTTTGCAGCAAAGCAT
CAAGGCAGTCGAACGTTCCATTCAAATTACAGAGGACGCTATTGAAAGAG
AGCGTTCGTCTCTTCAACATGACCGTTTTGGACGTCGAGCCTCTGAGATG
CCTCCATGTCTACGTCAACTCTACGAGTCCTCCCAGTGGCGCAACCAGGA
TGTGTATATTTGGCCTACTGTTCTCCAAGTCTCTCAAGATGGCCATGCAC
GTGCCGCCGTAGCTGAGAATGCTCTCCGTAGATTGCATTATCGTCCTGTA
GCTCCGATTCCAGCTCATCCGGTGCTTGCCGAAGCCGCGATAAAGGACGC
TAAGGAGGCTGTGGAACGTGTCACTACCGCTGTGCGGAAGGTCGTAGCAG
ACAAGAACAGGGAACGCCACGCCCTCCGGAAGGAGTTGGCCAAACAGTAC
ATGCACCGCCGGAAAGCCTGGATCAAACGCCTCGAGTCCCAAAAGGCTTC
CATGACTGAGGAAGAGAAACAATCAGCCCGACGCAGAGATCGTGAAATTT
TGGTAGCTACCAGATCTACTGCGGGAAACGGAGGTCCCCAAACTCCCAGC
GAAATAGATGTCGCCTTTAGTGAAATAGAAGCAGCCGGTGGAACCTGTGG
TGGTTTGGAAAGGTGGGGCCGTAGCATCACTGGTATTCCCGACCACTGCC
CAGGATACTTGCCACCTGCAAGTGATGGCGGCATGCTCATTGAAGATCCT
GTAGCCTATCATTACTGTTCCCGGTACATCAATCCGTGGACCCGAACAGA
AATTCTTCTCTTTTTGGACAAGTTCAGTGCTCACGGGAAGAACTTTCGTC
GTATCGCATCATTCTTCAAACATAAGACCGTCGAAGATGTTGTGCGCTTC
TACTTTGATAACAAGATTCGTTTGAAGTTGAAGCAATTATTATCGAAAGA
AGGCAACATAAGGAAGAGGAACAACAAGAGAATGTATCTTCAACGACTTG
CGGAGCTGCCCTATGAGTCGCGTTCTATTAAGGACAATTTTATATACGAG
CCCAATCTGTTTTCTGACAGTGATAATGAAGAAGGCAGGCTAACTCTCAG
GGCTGAGAAAATGAAACAAGGAGCTCTTGGACGCGGATGGGCATCAACTG
ATAGACAAGCCTTGATTTTCGCCTTGTGTCGTTTTGATGTTTCGGATGAT
GAGGAATCAAAGCCAGTTCCCACTGTATGGTCACAGATTGCAAGCGCTGT
CGGGAACAAGACCCCAAGACAATGCAGGCAGTTTTATTTTCAGCACAAAG
CTGTCTTGGCATTGGATGGATACAGACCTCCGAAGACAAAGAAGAGAGCG
TCACCCACCGCAATCGATCGGGTCGATGAGCAACCAAGAAAAGTTCAACG
GCGCCCAAAAGTTGTAGTCCATCACAGTGTTGAGACTGCAAACACCATTC
ACAAGATGCCCACGGCAATGATTGCACCTTGA
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protein sequence of Ggra1682.t1

>Ggra1682.t1 ID=Ggra1682.t1|Name=Ggra1682.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MVQEDELQDRYALQQSIKAVERSIQITEDAIERERSSLQHDRFGRRASEM
PPCLRQLYESSQWRNQDVYIWPTVLQVSQDGHARAAVAENALRRLHYRPV
APIPAHPVLAEAAIKDAKEAVERVTTAVRKVVADKNRERHALRKELAKQY
MHRRKAWIKRLESQKASMTEEEKQSARRRDREILVATRSTAGNGGPQTPS
EIDVAFSEIEAAGGTCGGLERWGRSITGIPDHCPGYLPPASDGGMLIEDP
VAYHYCSRYINPWTRTEILLFLDKFSAHGKNFRRIASFFKHKTVEDVVRF
YFDNKIRLKLKQLLSKEGNIRKRNNKRMYLQRLAELPYESRSIKDNFIYE
PNLFSDSDNEEGRLTLRAEKMKQGALGRGWASTDRQALIFALCRFDVSDD
EESKPVPTVWSQIASAVGNKTPRQCRQFYFQHKAVLALDGYRPPKTKKRA
SPTAIDRVDEQPRKVQRRPKVVVHHSVETANTIHKMPTAMIAP*
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mRNA from alignment at tig00000050_pilon:339545..341089-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1682.t1 ID=Ggra1682.t1|Name=Ggra1682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000050_pilon:339545..341089- (Gracilaria gracilis GNS1m male)
ATGGTACAAGAAGACGAACGTAAGTTACGCTATTTTCCTACAAGCCGCCG
GCCTCTCACTCGTGTCTAACCGCTTCAAACAGTTCAAGATCGCTATGCTT
TGCAGCAAAGCATCAAGGCAGTCGAACGTTCCATTCAAATTACAGAGGAC
GCTATTGAAAGAGAGCGTTCGTCTCTTCAACATGACCGTTTTGGACGTCG
AGCCTCTGAGATGCCTCCATGTCTACGTCAACTCTACGAGTCCTCCCAGT
GGCGCAACCAGGATGTGTATATTTGGCCTACTGTTCTCCAAGTCTCTCAA
GATGGCCATGCACGTGCCGCCGTAGCTGAGAATGCTCTCCGTAGATTGCA
TTATCGTCCTGTAGCTCCGATTCCAGCTCATCCGGTGCTTGCCGAAGCCG
CGATAAAGGACGCTAAGGAGGCTGTGGAACGTGTCACTACCGCTGTGCGG
AAGGTCGTAGCAGACAAGAACAGGGAACGCCACGCCCTCCGGAAGGAGTT
GGCCAAACAGTACATGCACCGCCGGAAAGCCTGGATCAAACGCCTCGAGT
CCCAAAAGGCTTCCATGACTGAGGAAGAGAAACAATCAGCCCGACGCAGA
GATCGTGAAATTTTGGTAGCTACCAGATCTACTGCGGGAAACGGAGGTCC
CCAAACTCCCAGCGAAATAGATGTCGCCTTTAGTGAAATAGAAGCAGCCG
GTGGAACCTGTGGTGGTTTGGAAAGGTGGGGCCGTAGCATCACTGGTATT
CCCGACCACTGCCCAGGATACTTGCCACCTGCAAGTGATGGCGGCATGCT
CATTGAAGATCCTGTAGCCTATCATTACTGTTCCCGGTACATCAATCCGT
GGACCCGAACAGAAATTCTTCTCTTTTTGGACAAGTTCAGTGCTCACGGG
AAGAACTTTCGTCGTATCGCATCATTCTTCAAACATAAGACCGTCGAAGA
TGTTGTGCGCTTCTACTTTGATAACAAGATTCGTTTGAAGTTGAAGCAAT
TATTATCGAAAGAAGGCAACATAAGGAAGAGGAACAACAAGAGAATGTAT
CTTCAACGACTTGCGGAGCTGCCCTATGAGTCGCGTTCTATTAAGGACAA
TTTTATATACGAGCCCAATCTGTTTTCTGACAGTGATAATGAAGAAGGCA
GGCTAACTCTCAGGGCTGAGAAAATGAAACAAGGAGCTCTTGGACGCGGA
TGGGCATCAACTGATAGACAAGCCTTGATTTTCGCCTTGTGTCGTTTTGA
TGTTTCGGATGATGAGGAATCAAAGCCAGTTCCCACTGTATGGTCACAGA
TTGCAAGCGCTGTCGGGAACAAGACCCCAAGACAATGCAGGCAGTTTTAT
TTTCAGCACAAAGCTGTCTTGGCATTGGATGGATACAGACCTCCGAAGAC
AAAGAAGAGAGCGTCACCCACCGCAATCGATCGGGTCGATGAGCAACCAA
GAAAAGTTCAACGGCGCCCAAAAGTTGTAGTCCATCACAGTGTTGAGACT
GCAAACACCATTCACAAGATGCCCACGGCAATGATTGCACCTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:339545..341089-

>Ggra1682.t1 ID=Ggra1682.t1|Name=Ggra1682.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000050_pilon:339545..341089- (Gracilaria gracilis GNS1m male)
ATGGTACAAGAAGACGAACTTCAAGATCGCTATGCTTTGCAGCAAAGCAT
CAAGGCAGTCGAACGTTCCATTCAAATTACAGAGGACGCTATTGAAAGAG
AGCGTTCGTCTCTTCAACATGACCGTTTTGGACGTCGAGCCTCTGAGATG
CCTCCATGTCTACGTCAACTCTACGAGTCCTCCCAGTGGCGCAACCAGGA
TGTGTATATTTGGCCTACTGTTCTCCAAGTCTCTCAAGATGGCCATGCAC
GTGCCGCCGTAGCTGAGAATGCTCTCCGTAGATTGCATTATCGTCCTGTA
GCTCCGATTCCAGCTCATCCGGTGCTTGCCGAAGCCGCGATAAAGGACGC
TAAGGAGGCTGTGGAACGTGTCACTACCGCTGTGCGGAAGGTCGTAGCAG
ACAAGAACAGGGAACGCCACGCCCTCCGGAAGGAGTTGGCCAAACAGTAC
ATGCACCGCCGGAAAGCCTGGATCAAACGCCTCGAGTCCCAAAAGGCTTC
CATGACTGAGGAAGAGAAACAATCAGCCCGACGCAGAGATCGTGAAATTT
TGGTAGCTACCAGATCTACTGCGGGAAACGGAGGTCCCCAAACTCCCAGC
GAAATAGATGTCGCCTTTAGTGAAATAGAAGCAGCCGGTGGAACCTGTGG
TGGTTTGGAAAGGTGGGGCCGTAGCATCACTGGTATTCCCGACCACTGCC
CAGGATACTTGCCACCTGCAAGTGATGGCGGCATGCTCATTGAAGATCCT
GTAGCCTATCATTACTGTTCCCGGTACATCAATCCGTGGACCCGAACAGA
AATTCTTCTCTTTTTGGACAAGTTCAGTGCTCACGGGAAGAACTTTCGTC
GTATCGCATCATTCTTCAAACATAAGACCGTCGAAGATGTTGTGCGCTTC
TACTTTGATAACAAGATTCGTTTGAAGTTGAAGCAATTATTATCGAAAGA
AGGCAACATAAGGAAGAGGAACAACAAGAGAATGTATCTTCAACGACTTG
CGGAGCTGCCCTATGAGTCGCGTTCTATTAAGGACAATTTTATATACGAG
CCCAATCTGTTTTCTGACAGTGATAATGAAGAAGGCAGGCTAACTCTCAG
GGCTGAGAAAATGAAACAAGGAGCTCTTGGACGCGGATGGGCATCAACTG
ATAGACAAGCCTTGATTTTCGCCTTGTGTCGTTTTGATGTTTCGGATGAT
GAGGAATCAAAGCCAGTTCCCACTGTATGGTCACAGATTGCAAGCGCTGT
CGGGAACAAGACCCCAAGACAATGCAGGCAGTTTTATTTTCAGCACAAAG
CTGTCTTGGCATTGGATGGATACAGACCTCCGAAGACAAAGAAGAGAGCG
TCACCCACCGCAATCGATCGGGTCGATGAGCAACCAAGAAAAGTTCAACG
GCGCCCAAAAGTTGTAGTCCATCACAGTGTTGAGACTGCAAACACCATTC
ACAAGATGCCCACGGCAATGATTGCACCTTGA
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