Ggra1681.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1681.t1
Unique NameGgra1681.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:337273..338511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705979.1
Preferred nameHOM2
PFAMsSemialdhyde_dh,Semialdhyde_dhC
Max annot lvl2759|Eukaryota
KEGG rclassRC00684
KEGG koko:K00133
KEGG ReactionR02291
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004073,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006566,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009088,GO:0009090,GO:0009092,GO:0009987,GO:0016020,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue6.85e-168
EggNOG OGsCOG0136@1|root,KOG4777@2759|Eukaryota
EC1.2.1.11
Descriptionaspartate-semialdehyde dehydrogenase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1681Ggra1681Gracilaria gracilis GNS1m malegenetig00000050_pilon 337273..338511 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1681.t1.start1Ggra1681.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 337273..337275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1681.t1.CDS1Ggra1681.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 337273..338511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1681.t1.exon1Ggra1681.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 337273..338511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1681.t1.stop1Ggra1681.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 338509..338511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1681.t1Ggra1681.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 337273..338511 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1681.t1 ID=Ggra1681.t1|Name=Ggra1681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MTPCFVSLAPLSVRAGADTRRSSNPSRPSFSSSFVGRVSVVPHVRHSRSA
SWQMVAARSEKIGVAVLGATGSVGQRFMQLLDNHPWFEVKALGASHRSAG
KKYSDAVNWKQAVPIPDDMAGIVVSECTPDDSAFDDVKIVFSGMDADFAG
DVEESFAKAGRAVFSNAKSHRMDPDVPILIPPVNLSHLDMIPIQRKNRGY
DSGFIITNANCSTTAMAIGIKPIMEKFGIEKIVVSTMQAISGAGYPGLSG
MDILDNVVPFIGSEEEKMQTESMKIYSKVDNGAFVPAEFNVSAMCNRVHV
LDGHTECLSLKLKSPATPEDVVNAIKSYPSITSDLGLPSAPPHDIVYHPA
KDRPQPRMDRMVGNGFTVTVGRVRECNVFDIRLVVFGHNTVVGAAGGSLL
NAELCVQKGYIN*
back to top

spliced messenger RNA

>Ggra1681.t1 ID=Ggra1681.t1|Name=Ggra1681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000050_pilon:337273..338511+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCTTGCTTCGTCTCATTAGCACCGCTCTCAGTTCGTGCGGGTGC
CGACACGCGCCGATCCTCCAATCCGAGTCGTCCCTCGTTTTCATCTTCGT
TCGTTGGTCGTGTATCCGTCGTGCCACATGTTCGACACTCACGATCTGCA
TCATGGCAAATGGTTGCTGCACGTTCCGAGAAGATCGGGGTTGCGGTGCT
AGGTGCGACTGGCTCTGTTGGGCAGCGTTTTATGCAGCTTCTTGATAACC
ATCCATGGTTTGAGGTGAAGGCGCTTGGCGCTTCTCATAGATCAGCCGGC
AAGAAGTACTCCGACGCCGTTAACTGGAAGCAAGCTGTTCCCATTCCTGA
TGACATGGCCGGCATTGTTGTTTCGGAATGTACTCCAGATGATTCAGCTT
TTGATGATGTCAAGATTGTATTCTCCGGCATGGATGCCGACTTCGCAGGA
GACGTGGAAGAGTCCTTCGCCAAGGCCGGTCGTGCTGTTTTTTCGAACGC
TAAGAGTCATCGTATGGATCCGGACGTACCTATTTTGATCCCGCCTGTCA
ATCTGTCGCATTTGGATATGATTCCCATACAACGTAAGAACCGTGGCTAT
GACTCCGGCTTCATTATTACCAATGCCAATTGCTCCACTACTGCAATGGC
CATTGGCATCAAGCCCATCATGGAAAAGTTTGGTATCGAAAAAATTGTCG
TTAGCACCATGCAGGCAATTAGTGGTGCTGGATATCCAGGCCTATCCGGT
ATGGACATATTGGATAATGTAGTTCCTTTCATTGGAAGCGAGGAAGAAAA
GATGCAAACTGAATCCATGAAGATCTATAGCAAGGTTGACAATGGTGCGT
TCGTGCCTGCAGAATTCAATGTTTCGGCAATGTGCAATCGTGTACATGTC
CTGGACGGTCACACAGAGTGTCTGTCCCTCAAGCTCAAGTCTCCGGCCAC
ACCAGAGGATGTCGTGAATGCCATCAAGTCATACCCCAGTATCACAAGCG
ATCTTGGGTTGCCTTCTGCTCCTCCACATGACATTGTCTATCACCCCGCT
AAGGATCGTCCTCAGCCAAGAATGGATCGAATGGTTGGTAATGGGTTTAC
TGTTACCGTTGGTCGGGTACGCGAATGTAATGTCTTTGACATTAGGCTTG
TAGTCTTTGGACATAATACCGTTGTTGGAGCAGCAGGAGGAAGTCTTCTA
AACGCTGAGTTGTGCGTTCAGAAAGGATATATCAACTGA
back to top

protein sequence of Ggra1681.t1

>Ggra1681.t1 ID=Ggra1681.t1|Name=Ggra1681.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MTPCFVSLAPLSVRAGADTRRSSNPSRPSFSSSFVGRVSVVPHVRHSRSA
SWQMVAARSEKIGVAVLGATGSVGQRFMQLLDNHPWFEVKALGASHRSAG
KKYSDAVNWKQAVPIPDDMAGIVVSECTPDDSAFDDVKIVFSGMDADFAG
DVEESFAKAGRAVFSNAKSHRMDPDVPILIPPVNLSHLDMIPIQRKNRGY
DSGFIITNANCSTTAMAIGIKPIMEKFGIEKIVVSTMQAISGAGYPGLSG
MDILDNVVPFIGSEEEKMQTESMKIYSKVDNGAFVPAEFNVSAMCNRVHV
LDGHTECLSLKLKSPATPEDVVNAIKSYPSITSDLGLPSAPPHDIVYHPA
KDRPQPRMDRMVGNGFTVTVGRVRECNVFDIRLVVFGHNTVVGAAGGSLL
NAELCVQKGYIN*
back to top

mRNA from alignment at tig00000050_pilon:337273..338511+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1681.t1 ID=Ggra1681.t1|Name=Ggra1681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000050_pilon:337273..338511+ (Gracilaria gracilis GNS1m male)
ATGACTCCTTGCTTCGTCTCATTAGCACCGCTCTCAGTTCGTGCGGGTGC
CGACACGCGCCGATCCTCCAATCCGAGTCGTCCCTCGTTTTCATCTTCGT
TCGTTGGTCGTGTATCCGTCGTGCCACATGTTCGACACTCACGATCTGCA
TCATGGCAAATGGTTGCTGCACGTTCCGAGAAGATCGGGGTTGCGGTGCT
AGGTGCGACTGGCTCTGTTGGGCAGCGTTTTATGCAGCTTCTTGATAACC
ATCCATGGTTTGAGGTGAAGGCGCTTGGCGCTTCTCATAGATCAGCCGGC
AAGAAGTACTCCGACGCCGTTAACTGGAAGCAAGCTGTTCCCATTCCTGA
TGACATGGCCGGCATTGTTGTTTCGGAATGTACTCCAGATGATTCAGCTT
TTGATGATGTCAAGATTGTATTCTCCGGCATGGATGCCGACTTCGCAGGA
GACGTGGAAGAGTCCTTCGCCAAGGCCGGTCGTGCTGTTTTTTCGAACGC
TAAGAGTCATCGTATGGATCCGGACGTACCTATTTTGATCCCGCCTGTCA
ATCTGTCGCATTTGGATATGATTCCCATACAACGTAAGAACCGTGGCTAT
GACTCCGGCTTCATTATTACCAATGCCAATTGCTCCACTACTGCAATGGC
CATTGGCATCAAGCCCATCATGGAAAAGTTTGGTATCGAAAAAATTGTCG
TTAGCACCATGCAGGCAATTAGTGGTGCTGGATATCCAGGCCTATCCGGT
ATGGACATATTGGATAATGTAGTTCCTTTCATTGGAAGCGAGGAAGAAAA
GATGCAAACTGAATCCATGAAGATCTATAGCAAGGTTGACAATGGTGCGT
TCGTGCCTGCAGAATTCAATGTTTCGGCAATGTGCAATCGTGTACATGTC
CTGGACGGTCACACAGAGTGTCTGTCCCTCAAGCTCAAGTCTCCGGCCAC
ACCAGAGGATGTCGTGAATGCCATCAAGTCATACCCCAGTATCACAAGCG
ATCTTGGGTTGCCTTCTGCTCCTCCACATGACATTGTCTATCACCCCGCT
AAGGATCGTCCTCAGCCAAGAATGGATCGAATGGTTGGTAATGGGTTTAC
TGTTACCGTTGGTCGGGTACGCGAATGTAATGTCTTTGACATTAGGCTTG
TAGTCTTTGGACATAATACCGTTGTTGGAGCAGCAGGAGGAAGTCTTCTA
AACGCTGAGTTGTGCGTTCAGAAAGGATATATCAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:337273..338511+

>Ggra1681.t1 ID=Ggra1681.t1|Name=Ggra1681.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000050_pilon:337273..338511+ (Gracilaria gracilis GNS1m male)
ATGACTCCTTGCTTCGTCTCATTAGCACCGCTCTCAGTTCGTGCGGGTGC
CGACACGCGCCGATCCTCCAATCCGAGTCGTCCCTCGTTTTCATCTTCGT
TCGTTGGTCGTGTATCCGTCGTGCCACATGTTCGACACTCACGATCTGCA
TCATGGCAAATGGTTGCTGCACGTTCCGAGAAGATCGGGGTTGCGGTGCT
AGGTGCGACTGGCTCTGTTGGGCAGCGTTTTATGCAGCTTCTTGATAACC
ATCCATGGTTTGAGGTGAAGGCGCTTGGCGCTTCTCATAGATCAGCCGGC
AAGAAGTACTCCGACGCCGTTAACTGGAAGCAAGCTGTTCCCATTCCTGA
TGACATGGCCGGCATTGTTGTTTCGGAATGTACTCCAGATGATTCAGCTT
TTGATGATGTCAAGATTGTATTCTCCGGCATGGATGCCGACTTCGCAGGA
GACGTGGAAGAGTCCTTCGCCAAGGCCGGTCGTGCTGTTTTTTCGAACGC
TAAGAGTCATCGTATGGATCCGGACGTACCTATTTTGATCCCGCCTGTCA
ATCTGTCGCATTTGGATATGATTCCCATACAACGTAAGAACCGTGGCTAT
GACTCCGGCTTCATTATTACCAATGCCAATTGCTCCACTACTGCAATGGC
CATTGGCATCAAGCCCATCATGGAAAAGTTTGGTATCGAAAAAATTGTCG
TTAGCACCATGCAGGCAATTAGTGGTGCTGGATATCCAGGCCTATCCGGT
ATGGACATATTGGATAATGTAGTTCCTTTCATTGGAAGCGAGGAAGAAAA
GATGCAAACTGAATCCATGAAGATCTATAGCAAGGTTGACAATGGTGCGT
TCGTGCCTGCAGAATTCAATGTTTCGGCAATGTGCAATCGTGTACATGTC
CTGGACGGTCACACAGAGTGTCTGTCCCTCAAGCTCAAGTCTCCGGCCAC
ACCAGAGGATGTCGTGAATGCCATCAAGTCATACCCCAGTATCACAAGCG
ATCTTGGGTTGCCTTCTGCTCCTCCACATGACATTGTCTATCACCCCGCT
AAGGATCGTCCTCAGCCAAGAATGGATCGAATGGTTGGTAATGGGTTTAC
TGTTACCGTTGGTCGGGTACGCGAATGTAATGTCTTTGACATTAGGCTTG
TAGTCTTTGGACATAATACCGTTGTTGGAGCAGCAGGAGGAAGTCTTCTA
AACGCTGAGTTGTGCGTTCAGAAAGGATATATCAACTGA
back to top