Ggra1679.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1679.t1
Unique NameGgra1679.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:328890..330158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000001366
Preferred nameEME1
PFAMsERCC4
Max annot lvl33208|Metazoa
KEGG koko:K10882
KEGG Pathwayko03440,ko03460,map03440,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007131,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0022402,GO:0022414,GO:0031297,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048476,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046,GO:1903047
Evalue2.83e-05
EggNOG OGs2CRM8@1|root,2R8ER@2759|Eukaryota,38FRF@33154|Opisthokonta,3BEJ0@33208|Metazoa,3D167@33213|Bilateria,483CI@7711|Chordata,496ES@7742|Vertebrata,4GKEC@8782|Aves
DescriptionCrossover junction endonuclease EME1
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1679Ggra1679Gracilaria gracilis GNS1m malegenetig00000050_pilon 328890..330158 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1679.t1.start1Ggra1679.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 328890..328892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1679.t1.CDS1Ggra1679.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 328890..330158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1679.t1.exon1Ggra1679.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 328890..330158 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1679.t1.stop1Ggra1679.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 330156..330158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1679.t1Ggra1679.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 328890..330158 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1679.t1 ID=Ggra1679.t1|Name=Ggra1679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MADFGVSHDDLSDDSDLFIPPLSIGAPYTQSGAEGGYAQKEGQPSSKRAL
SHAQESKTTKASAKAVKESRESTHAEQEARKEPQVQRMEDVITKQKLNPK
NCDDRLEVVVSRQVYDDRSDKSILVHLREVLSDEQICYDNRQMPNLISWR
FKQVDPSSPPSLVPLSLIVFTAADYVGHMLNRTLQSFCQGLKHELPGQKV
LLAVCGVDNYCKQTARRAFRRQKAGTAKEGSQKSDSLWYGKEAVQDSYAL
LFLEYGIRTHDVQDFEELTHFISDVSRAVAKTPSYKNQAYLESIVTYKRK
KVLKSTAPLLYSQGNVHSNASQDDAIDVNVPHNKVSGISEQELRAAYLKM
LVQIPGISAAVAGAIQKKYPTLQALLKAVSISESDLNILSDIQVGESNRN
IGMKRSQTISEILTSLDPHKEC*
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spliced messenger RNA

>Ggra1679.t1 ID=Ggra1679.t1|Name=Ggra1679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000050_pilon:328890..330158+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATTTTGGTGTGTCGCACGATGACTTAAGCGATGATTCCGACCT
TTTCATACCCCCTCTATCTATTGGAGCACCATATACCCAATCAGGTGCTG
AGGGAGGTTATGCACAGAAGGAGGGGCAGCCCTCATCAAAAAGGGCACTG
AGCCATGCTCAGGAAAGCAAAACGACTAAAGCATCCGCGAAGGCTGTCAA
AGAATCCCGCGAATCTACGCATGCAGAACAAGAAGCACGCAAGGAACCGC
AGGTGCAAAGAATGGAAGATGTCATTACTAAGCAAAAGTTGAATCCTAAA
AACTGTGATGATCGACTAGAAGTTGTTGTATCTCGGCAAGTGTACGATGA
CCGGTCTGACAAAAGTATTCTCGTGCACCTCAGAGAAGTCCTTTCAGATG
AACAGATTTGTTACGATAATCGGCAGATGCCCAATCTGATATCGTGGCGG
TTCAAACAGGTTGATCCTTCTTCTCCTCCCTCACTGGTCCCATTGTCGTT
GATAGTATTTACGGCGGCGGACTATGTTGGTCATATGCTCAACAGAACAC
TTCAAAGCTTCTGCCAGGGTCTAAAACATGAGCTTCCTGGGCAGAAAGTG
TTGCTAGCTGTTTGTGGTGTTGACAACTACTGCAAACAAACTGCAAGAAG
AGCGTTTAGAAGACAAAAAGCAGGAACCGCAAAAGAAGGAAGCCAAAAAA
GTGACTCTCTCTGGTACGGAAAAGAAGCGGTTCAGGATAGTTACGCATTG
CTTTTCTTGGAGTACGGAATTCGAACGCACGACGTTCAAGATTTTGAGGA
GTTAACACATTTCATTAGTGATGTTTCTCGTGCTGTAGCCAAAACTCCGT
CCTACAAGAACCAAGCTTACTTAGAGTCAATTGTAACTTATAAGAGAAAA
AAAGTGCTGAAGTCCACAGCTCCCCTTCTTTATTCACAAGGTAATGTGCA
TTCTAATGCATCCCAGGATGATGCAATTGACGTTAATGTCCCACATAACA
AGGTGTCTGGAATATCTGAACAAGAATTGAGAGCTGCGTATCTTAAAATG
CTTGTCCAGATCCCTGGTATCTCCGCAGCAGTGGCCGGAGCAATTCAGAA
GAAGTATCCTACTCTTCAGGCTCTTCTCAAGGCAGTTAGCATCTCTGAAT
CGGATCTGAATATTCTGTCCGACATTCAAGTCGGGGAGTCAAACAGGAAT
ATCGGAATGAAGAGGTCTCAAACAATTTCCGAAATACTCACTTCGCTCGA
CCCGCATAAAGAGTGTTAA
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protein sequence of Ggra1679.t1

>Ggra1679.t1 ID=Ggra1679.t1|Name=Ggra1679.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MADFGVSHDDLSDDSDLFIPPLSIGAPYTQSGAEGGYAQKEGQPSSKRAL
SHAQESKTTKASAKAVKESRESTHAEQEARKEPQVQRMEDVITKQKLNPK
NCDDRLEVVVSRQVYDDRSDKSILVHLREVLSDEQICYDNRQMPNLISWR
FKQVDPSSPPSLVPLSLIVFTAADYVGHMLNRTLQSFCQGLKHELPGQKV
LLAVCGVDNYCKQTARRAFRRQKAGTAKEGSQKSDSLWYGKEAVQDSYAL
LFLEYGIRTHDVQDFEELTHFISDVSRAVAKTPSYKNQAYLESIVTYKRK
KVLKSTAPLLYSQGNVHSNASQDDAIDVNVPHNKVSGISEQELRAAYLKM
LVQIPGISAAVAGAIQKKYPTLQALLKAVSISESDLNILSDIQVGESNRN
IGMKRSQTISEILTSLDPHKEC*
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mRNA from alignment at tig00000050_pilon:328890..330158+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1679.t1 ID=Ggra1679.t1|Name=Ggra1679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000050_pilon:328890..330158+ (Gracilaria gracilis GNS1m male)
ATGGCGGATTTTGGTGTGTCGCACGATGACTTAAGCGATGATTCCGACCT
TTTCATACCCCCTCTATCTATTGGAGCACCATATACCCAATCAGGTGCTG
AGGGAGGTTATGCACAGAAGGAGGGGCAGCCCTCATCAAAAAGGGCACTG
AGCCATGCTCAGGAAAGCAAAACGACTAAAGCATCCGCGAAGGCTGTCAA
AGAATCCCGCGAATCTACGCATGCAGAACAAGAAGCACGCAAGGAACCGC
AGGTGCAAAGAATGGAAGATGTCATTACTAAGCAAAAGTTGAATCCTAAA
AACTGTGATGATCGACTAGAAGTTGTTGTATCTCGGCAAGTGTACGATGA
CCGGTCTGACAAAAGTATTCTCGTGCACCTCAGAGAAGTCCTTTCAGATG
AACAGATTTGTTACGATAATCGGCAGATGCCCAATCTGATATCGTGGCGG
TTCAAACAGGTTGATCCTTCTTCTCCTCCCTCACTGGTCCCATTGTCGTT
GATAGTATTTACGGCGGCGGACTATGTTGGTCATATGCTCAACAGAACAC
TTCAAAGCTTCTGCCAGGGTCTAAAACATGAGCTTCCTGGGCAGAAAGTG
TTGCTAGCTGTTTGTGGTGTTGACAACTACTGCAAACAAACTGCAAGAAG
AGCGTTTAGAAGACAAAAAGCAGGAACCGCAAAAGAAGGAAGCCAAAAAA
GTGACTCTCTCTGGTACGGAAAAGAAGCGGTTCAGGATAGTTACGCATTG
CTTTTCTTGGAGTACGGAATTCGAACGCACGACGTTCAAGATTTTGAGGA
GTTAACACATTTCATTAGTGATGTTTCTCGTGCTGTAGCCAAAACTCCGT
CCTACAAGAACCAAGCTTACTTAGAGTCAATTGTAACTTATAAGAGAAAA
AAAGTGCTGAAGTCCACAGCTCCCCTTCTTTATTCACAAGGTAATGTGCA
TTCTAATGCATCCCAGGATGATGCAATTGACGTTAATGTCCCACATAACA
AGGTGTCTGGAATATCTGAACAAGAATTGAGAGCTGCGTATCTTAAAATG
CTTGTCCAGATCCCTGGTATCTCCGCAGCAGTGGCCGGAGCAATTCAGAA
GAAGTATCCTACTCTTCAGGCTCTTCTCAAGGCAGTTAGCATCTCTGAAT
CGGATCTGAATATTCTGTCCGACATTCAAGTCGGGGAGTCAAACAGGAAT
ATCGGAATGAAGAGGTCTCAAACAATTTCCGAAATACTCACTTCGCTCGA
CCCGCATAAAGAGTGTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:328890..330158+

>Ggra1679.t1 ID=Ggra1679.t1|Name=Ggra1679.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000050_pilon:328890..330158+ (Gracilaria gracilis GNS1m male)
ATGGCGGATTTTGGTGTGTCGCACGATGACTTAAGCGATGATTCCGACCT
TTTCATACCCCCTCTATCTATTGGAGCACCATATACCCAATCAGGTGCTG
AGGGAGGTTATGCACAGAAGGAGGGGCAGCCCTCATCAAAAAGGGCACTG
AGCCATGCTCAGGAAAGCAAAACGACTAAAGCATCCGCGAAGGCTGTCAA
AGAATCCCGCGAATCTACGCATGCAGAACAAGAAGCACGCAAGGAACCGC
AGGTGCAAAGAATGGAAGATGTCATTACTAAGCAAAAGTTGAATCCTAAA
AACTGTGATGATCGACTAGAAGTTGTTGTATCTCGGCAAGTGTACGATGA
CCGGTCTGACAAAAGTATTCTCGTGCACCTCAGAGAAGTCCTTTCAGATG
AACAGATTTGTTACGATAATCGGCAGATGCCCAATCTGATATCGTGGCGG
TTCAAACAGGTTGATCCTTCTTCTCCTCCCTCACTGGTCCCATTGTCGTT
GATAGTATTTACGGCGGCGGACTATGTTGGTCATATGCTCAACAGAACAC
TTCAAAGCTTCTGCCAGGGTCTAAAACATGAGCTTCCTGGGCAGAAAGTG
TTGCTAGCTGTTTGTGGTGTTGACAACTACTGCAAACAAACTGCAAGAAG
AGCGTTTAGAAGACAAAAAGCAGGAACCGCAAAAGAAGGAAGCCAAAAAA
GTGACTCTCTCTGGTACGGAAAAGAAGCGGTTCAGGATAGTTACGCATTG
CTTTTCTTGGAGTACGGAATTCGAACGCACGACGTTCAAGATTTTGAGGA
GTTAACACATTTCATTAGTGATGTTTCTCGTGCTGTAGCCAAAACTCCGT
CCTACAAGAACCAAGCTTACTTAGAGTCAATTGTAACTTATAAGAGAAAA
AAAGTGCTGAAGTCCACAGCTCCCCTTCTTTATTCACAAGGTAATGTGCA
TTCTAATGCATCCCAGGATGATGCAATTGACGTTAATGTCCCACATAACA
AGGTGTCTGGAATATCTGAACAAGAATTGAGAGCTGCGTATCTTAAAATG
CTTGTCCAGATCCCTGGTATCTCCGCAGCAGTGGCCGGAGCAATTCAGAA
GAAGTATCCTACTCTTCAGGCTCTTCTCAAGGCAGTTAGCATCTCTGAAT
CGGATCTGAATATTCTGTCCGACATTCAAGTCGGGGAGTCAAACAGGAAT
ATCGGAATGAAGAGGTCTCAAACAATTTCCGAAATACTCACTTCGCTCGA
CCCGCATAAAGAGTGTTAA
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