Ggra1678.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1678.t1
Unique Name	Ggra1678.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:325497..326516 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706665.1
PFAMs	Glyco_transf_25
Max annot lvl	2759\|Eukaryota
Evalue	5.34e-26
EggNOG OGs	KOG4179@1\|root,KOG4179@2759\|Eukaryota
Description	procollagen galactosyltransferase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1678	Ggra1678	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 325497..326516 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1678.t1.start1	Ggra1678.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 325497..325499 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1678.t1.CDS1	Ggra1678.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 325497..326516 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1678.t1.exon1	Ggra1678.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 325497..326516 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1678.t1.stop1	Ggra1678.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 326514..326516 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1678.t1	Ggra1678.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 325497..326516 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:325497..326516+
coding sequence from alignment at tig00000050_pilon:325497..326516+

mRNA sequence

>Ggra1678.t1 ID=Ggra1678.t1|Name=Ggra1678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MILLLRFHLDGHVSDAILSTVPVDQLPHPIDIIAQVRNRRIKLPKEIGFH
TPGYVHTRLATFRNKYPSEDVGGSGTFDDVFVITNEKCTSQFGVIEKLAH
EAGISITKWEVKQVRHVSLDMSSVPISESTLRMLRGVKGRDLSVVRKHIA
YFDAHRRLWAHISATGKQRSLVIDDTLFPTNRLLRSIPSVLTDADQESVA
RQKPWHFIFLRRKVVHHNSKTKKRNEPMWVMNAKYKHSVVLANISHGASA
YVLSLDGAIFLQKHVREFREPLDIEIGLVQREFKDQFVALSACNNDAQTP
FCPEMIMDISHNSAKAHNCLWRRLYERWTARDFDSHFQE*

spliced messenger RNA

>Ggra1678.t1 ID=Ggra1678.t1|Name=Ggra1678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000050_pilon:325497..326516+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTTACTTCTTCGGTTTCATCTGGATGGTCACGTGTCGGACGCTAT
TTTGTCTACTGTCCCAGTCGATCAACTCCCACATCCCATTGATATCATTG
CACAGGTTCGAAATCGAAGAATCAAGTTGCCTAAAGAGATTGGCTTCCAT
ACACCTGGTTATGTCCACACAAGGTTGGCAACATTTCGAAATAAATACCC
CTCTGAAGATGTTGGAGGAAGTGGAACGTTTGACGACGTCTTTGTCATTA
CAAATGAAAAATGCACTTCTCAGTTTGGGGTGATAGAGAAGCTGGCGCAT
GAAGCTGGTATCTCTATCACTAAATGGGAAGTAAAGCAAGTAAGACATGT
CTCTCTTGACATGTCTTCCGTTCCCATCTCAGAATCTACTCTGCGTATGC
TTCGTGGCGTAAAGGGGAGGGATTTGTCTGTCGTTCGAAAGCACATCGCG
TATTTTGACGCGCATAGAAGACTCTGGGCTCACATATCTGCAACTGGAAA
ACAGCGATCTCTTGTTATTGATGACACTCTGTTCCCTACCAATCGCTTGC
TTAGAAGTATCCCGTCAGTGCTTACGGACGCAGACCAAGAATCTGTTGCC
AGACAAAAACCATGGCACTTCATCTTTCTACGAAGGAAAGTAGTTCACCA
CAATTCCAAAACCAAGAAGCGAAACGAGCCGATGTGGGTTATGAATGCGA
AGTACAAACATTCAGTTGTCCTGGCCAACATTTCTCACGGAGCAAGTGCG
TATGTCTTATCCCTTGACGGTGCGATATTCCTCCAGAAGCATGTTCGAGA
GTTCCGAGAACCACTCGATATTGAAATTGGCCTTGTGCAGCGTGAGTTTA
AGGACCAGTTTGTTGCGCTCAGTGCATGTAACAACGATGCCCAAACTCCT
TTCTGTCCAGAAATGATTATGGATATTTCTCACAATTCAGCAAAGGCTCA
CAACTGTCTATGGCGTCGACTTTACGAACGATGGACCGCACGAGACTTTG
ACAGTCACTTCCAAGAATAA

protein sequence of Ggra1678.t1

>Ggra1678.t1 ID=Ggra1678.t1|Name=Ggra1678.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MILLLRFHLDGHVSDAILSTVPVDQLPHPIDIIAQVRNRRIKLPKEIGFH
TPGYVHTRLATFRNKYPSEDVGGSGTFDDVFVITNEKCTSQFGVIEKLAH
EAGISITKWEVKQVRHVSLDMSSVPISESTLRMLRGVKGRDLSVVRKHIA
YFDAHRRLWAHISATGKQRSLVIDDTLFPTNRLLRSIPSVLTDADQESVA
RQKPWHFIFLRRKVVHHNSKTKKRNEPMWVMNAKYKHSVVLANISHGASA
YVLSLDGAIFLQKHVREFREPLDIEIGLVQREFKDQFVALSACNNDAQTP
FCPEMIMDISHNSAKAHNCLWRRLYERWTARDFDSHFQE*

mRNA from alignment at tig00000050_pilon:325497..326516+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1678.t1 ID=Ggra1678.t1|Name=Ggra1678.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000050_pilon:325497..326516+ (Gracilaria gracilis GNS1m male)
ATGATCTTACTTCTTCGGTTTCATCTGGATGGTCACGTGTCGGACGCTAT
TTTGTCTACTGTCCCAGTCGATCAACTCCCACATCCCATTGATATCATTG
CACAGGTTCGAAATCGAAGAATCAAGTTGCCTAAAGAGATTGGCTTCCAT
ACACCTGGTTATGTCCACACAAGGTTGGCAACATTTCGAAATAAATACCC
CTCTGAAGATGTTGGAGGAAGTGGAACGTTTGACGACGTCTTTGTCATTA
CAAATGAAAAATGCACTTCTCAGTTTGGGGTGATAGAGAAGCTGGCGCAT
GAAGCTGGTATCTCTATCACTAAATGGGAAGTAAAGCAAGTAAGACATGT
CTCTCTTGACATGTCTTCCGTTCCCATCTCAGAATCTACTCTGCGTATGC
TTCGTGGCGTAAAGGGGAGGGATTTGTCTGTCGTTCGAAAGCACATCGCG
TATTTTGACGCGCATAGAAGACTCTGGGCTCACATATCTGCAACTGGAAA
ACAGCGATCTCTTGTTATTGATGACACTCTGTTCCCTACCAATCGCTTGC
TTAGAAGTATCCCGTCAGTGCTTACGGACGCAGACCAAGAATCTGTTGCC
AGACAAAAACCATGGCACTTCATCTTTCTACGAAGGAAAGTAGTTCACCA
CAATTCCAAAACCAAGAAGCGAAACGAGCCGATGTGGGTTATGAATGCGA
AGTACAAACATTCAGTTGTCCTGGCCAACATTTCTCACGGAGCAAGTGCG
TATGTCTTATCCCTTGACGGTGCGATATTCCTCCAGAAGCATGTTCGAGA
GTTCCGAGAACCACTCGATATTGAAATTGGCCTTGTGCAGCGTGAGTTTA
AGGACCAGTTTGTTGCGCTCAGTGCATGTAACAACGATGCCCAAACTCCT
TTCTGTCCAGAAATGATTATGGATATTTCTCACAATTCAGCAAAGGCTCA
CAACTGTCTATGGCGTCGACTTTACGAACGATGGACCGCACGAGACTTTG
ACAGTCACTTCCAAGAATAA

Coding sequence (CDS) from alignment at tig00000050_pilon:325497..326516+

>Ggra1678.t1 ID=Ggra1678.t1|Name=Ggra1678.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000050_pilon:325497..326516+ (Gracilaria gracilis GNS1m male)
ATGATCTTACTTCTTCGGTTTCATCTGGATGGTCACGTGTCGGACGCTAT
TTTGTCTACTGTCCCAGTCGATCAACTCCCACATCCCATTGATATCATTG
CACAGGTTCGAAATCGAAGAATCAAGTTGCCTAAAGAGATTGGCTTCCAT
ACACCTGGTTATGTCCACACAAGGTTGGCAACATTTCGAAATAAATACCC
CTCTGAAGATGTTGGAGGAAGTGGAACGTTTGACGACGTCTTTGTCATTA
CAAATGAAAAATGCACTTCTCAGTTTGGGGTGATAGAGAAGCTGGCGCAT
GAAGCTGGTATCTCTATCACTAAATGGGAAGTAAAGCAAGTAAGACATGT
CTCTCTTGACATGTCTTCCGTTCCCATCTCAGAATCTACTCTGCGTATGC
TTCGTGGCGTAAAGGGGAGGGATTTGTCTGTCGTTCGAAAGCACATCGCG
TATTTTGACGCGCATAGAAGACTCTGGGCTCACATATCTGCAACTGGAAA
ACAGCGATCTCTTGTTATTGATGACACTCTGTTCCCTACCAATCGCTTGC
TTAGAAGTATCCCGTCAGTGCTTACGGACGCAGACCAAGAATCTGTTGCC
AGACAAAAACCATGGCACTTCATCTTTCTACGAAGGAAAGTAGTTCACCA
CAATTCCAAAACCAAGAAGCGAAACGAGCCGATGTGGGTTATGAATGCGA
AGTACAAACATTCAGTTGTCCTGGCCAACATTTCTCACGGAGCAAGTGCG
TATGTCTTATCCCTTGACGGTGCGATATTCCTCCAGAAGCATGTTCGAGA
GTTCCGAGAACCACTCGATATTGAAATTGGCCTTGTGCAGCGTGAGTTTA
AGGACCAGTTTGTTGCGCTCAGTGCATGTAACAACGATGCCCAAACTCCT
TTCTGTCCAGAAATGATTATGGATATTTCTCACAATTCAGCAAAGGCTCA
CAACTGTCTATGGCGTCGACTTTACGAACGATGGACCGCACGAGACTTTG
ACAGTCACTTCCAAGAATAA