Ggra1677.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1677.t1
Unique NameGgra1677.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:323278..324645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704853.1
PFAMsSBF
Max annot lvl2759|Eukaryota
KEGG koko:K03453
KEGG TC2.A.28
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue4.21e-81
EggNOG OGsCOG0385@1|root,KOG2718@2759|Eukaryota
Descriptionbile acid:sodium symporter activity
COG categoryJ
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1677Ggra1677Gracilaria gracilis GNS1m malegenetig00000050_pilon 323278..324645 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1677.t1.start1Ggra1677.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 323278..323280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1677.t1.CDS1Ggra1677.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 323278..324645 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1677.t1.exon1Ggra1677.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 323278..324645 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1677.t1.stop1Ggra1677.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 324643..324645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1677.t1Ggra1677.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 323278..324645 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1677.t1 ID=Ggra1677.t1|Name=Ggra1677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MAARGALSSNSVRLNQPPSPPPRVADVWLETDATPSTAHSFAMSPFSAFA
PLSVPTSLRRHAHQREARTCRATRTPFLAGATRHALRHRLTPSQVHRSSI
PTACDLSRPSPSSRRPVPSDPAPHRANSVLQVLTNLFPLWVSLGAVLAFL
QPATFLWFRSSYIVPTLSLIMLGMGLTITPQSFSAVFRTPRQVLLGACAQ
YTLMPLLARSLSLVLRLPPALAAGVVLVGVCPGGAASNVICLLARANVAL
SVVLTLVSTLLSVLLIPSLMSVLAGTLVPVAPIPLLVSTAQVVLLPLLLG
YVLQTTFPRIVSAASDFLPLVSVLGVTAICSGVIAANASALATVGPQLTL
AIAIMHILGGILGYVIASVFGLDSSSRRTVSIEVMMQNSTLAVSLANAHF
ANPVTAIPGAISAVMHSVFGSVLAGIWRFSASRDDVPLIEAKPVAVDSLY
RELHE*
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spliced messenger RNA

>Ggra1677.t1 ID=Ggra1677.t1|Name=Ggra1677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000050_pilon:323278..324645+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCGCGAGGTGCACTGAGCTCCAACTCCGTCCGCCTCAACCAGCC
GCCCTCGCCGCCTCCTCGCGTCGCTGACGTCTGGTTAGAGACCGATGCCA
CGCCCTCCACCGCCCACAGCTTTGCCATGAGCCCCTTCTCCGCGTTTGCG
CCGCTTTCCGTGCCAACAAGTCTTCGTCGCCACGCCCACCAGCGCGAAGC
ACGCACTTGCCGTGCCACTCGCACCCCTTTTCTCGCGGGAGCCACTCGTC
ATGCGCTACGCCACCGCCTCACGCCATCCCAAGTTCATCGCTCGTCCATC
CCCACGGCTTGTGATCTCTCGCGGCCGTCTCCGTCGTCTCGCCGGCCTGT
ACCATCTGATCCCGCTCCTCATCGCGCCAACAGCGTGCTGCAAGTCTTGA
CCAACTTGTTTCCGCTATGGGTTTCCCTGGGCGCCGTGCTTGCCTTCTTG
CAGCCCGCGACGTTCCTCTGGTTTCGCTCATCCTACATTGTACCCACTCT
TTCCCTCATCATGTTGGGCATGGGGCTCACCATAACCCCGCAATCGTTTT
CCGCTGTTTTCCGTACGCCGCGACAAGTTTTGTTGGGCGCTTGCGCTCAG
TACACCCTCATGCCACTCCTTGCGCGATCGCTGTCACTCGTTCTGCGTCT
TCCACCCGCACTCGCAGCGGGGGTAGTTTTGGTCGGCGTCTGTCCCGGTG
GCGCTGCAAGTAATGTAATCTGCCTCCTCGCCCGCGCAAACGTCGCTTTA
TCGGTTGTATTGACGTTGGTATCAACTCTTCTCAGTGTACTCTTAATCCC
CTCTCTCATGAGTGTTCTGGCGGGTACGTTGGTACCAGTCGCCCCAATTC
CCTTACTAGTTAGCACTGCACAAGTCGTTCTTTTGCCTCTTCTACTTGGC
TACGTACTGCAGACCACTTTTCCGCGCATTGTATCTGCTGCATCCGATTT
TCTTCCGCTTGTATCCGTTTTGGGTGTCACTGCCATTTGCAGTGGCGTCA
TTGCTGCGAATGCTTCTGCGCTTGCCACCGTGGGACCGCAGCTCACGTTA
GCCATCGCAATCATGCACATTTTGGGCGGCATTTTGGGCTATGTTATTGC
CTCAGTGTTCGGACTTGATTCCTCGTCGAGGAGAACAGTCAGCATCGAAG
TGATGATGCAAAACTCCACTCTGGCGGTGTCTCTTGCTAACGCCCACTTC
GCCAACCCGGTTACTGCTATACCGGGCGCTATTAGTGCCGTAATGCATTC
TGTTTTTGGTTCAGTTCTTGCGGGAATCTGGAGGTTTTCTGCCTCGAGGG
ATGACGTTCCGCTCATTGAAGCGAAGCCTGTTGCGGTTGATTCTCTATAT
CGCGAACTGCACGAGTGA
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protein sequence of Ggra1677.t1

>Ggra1677.t1 ID=Ggra1677.t1|Name=Ggra1677.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MAARGALSSNSVRLNQPPSPPPRVADVWLETDATPSTAHSFAMSPFSAFA
PLSVPTSLRRHAHQREARTCRATRTPFLAGATRHALRHRLTPSQVHRSSI
PTACDLSRPSPSSRRPVPSDPAPHRANSVLQVLTNLFPLWVSLGAVLAFL
QPATFLWFRSSYIVPTLSLIMLGMGLTITPQSFSAVFRTPRQVLLGACAQ
YTLMPLLARSLSLVLRLPPALAAGVVLVGVCPGGAASNVICLLARANVAL
SVVLTLVSTLLSVLLIPSLMSVLAGTLVPVAPIPLLVSTAQVVLLPLLLG
YVLQTTFPRIVSAASDFLPLVSVLGVTAICSGVIAANASALATVGPQLTL
AIAIMHILGGILGYVIASVFGLDSSSRRTVSIEVMMQNSTLAVSLANAHF
ANPVTAIPGAISAVMHSVFGSVLAGIWRFSASRDDVPLIEAKPVAVDSLY
RELHE*
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mRNA from alignment at tig00000050_pilon:323278..324645+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1677.t1 ID=Ggra1677.t1|Name=Ggra1677.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000050_pilon:323278..324645+ (Gracilaria gracilis GNS1m male)
ATGGCAGCGCGAGGTGCACTGAGCTCCAACTCCGTCCGCCTCAACCAGCC
GCCCTCGCCGCCTCCTCGCGTCGCTGACGTCTGGTTAGAGACCGATGCCA
CGCCCTCCACCGCCCACAGCTTTGCCATGAGCCCCTTCTCCGCGTTTGCG
CCGCTTTCCGTGCCAACAAGTCTTCGTCGCCACGCCCACCAGCGCGAAGC
ACGCACTTGCCGTGCCACTCGCACCCCTTTTCTCGCGGGAGCCACTCGTC
ATGCGCTACGCCACCGCCTCACGCCATCCCAAGTTCATCGCTCGTCCATC
CCCACGGCTTGTGATCTCTCGCGGCCGTCTCCGTCGTCTCGCCGGCCTGT
ACCATCTGATCCCGCTCCTCATCGCGCCAACAGCGTGCTGCAAGTCTTGA
CCAACTTGTTTCCGCTATGGGTTTCCCTGGGCGCCGTGCTTGCCTTCTTG
CAGCCCGCGACGTTCCTCTGGTTTCGCTCATCCTACATTGTACCCACTCT
TTCCCTCATCATGTTGGGCATGGGGCTCACCATAACCCCGCAATCGTTTT
CCGCTGTTTTCCGTACGCCGCGACAAGTTTTGTTGGGCGCTTGCGCTCAG
TACACCCTCATGCCACTCCTTGCGCGATCGCTGTCACTCGTTCTGCGTCT
TCCACCCGCACTCGCAGCGGGGGTAGTTTTGGTCGGCGTCTGTCCCGGTG
GCGCTGCAAGTAATGTAATCTGCCTCCTCGCCCGCGCAAACGTCGCTTTA
TCGGTTGTATTGACGTTGGTATCAACTCTTCTCAGTGTACTCTTAATCCC
CTCTCTCATGAGTGTTCTGGCGGGTACGTTGGTACCAGTCGCCCCAATTC
CCTTACTAGTTAGCACTGCACAAGTCGTTCTTTTGCCTCTTCTACTTGGC
TACGTACTGCAGACCACTTTTCCGCGCATTGTATCTGCTGCATCCGATTT
TCTTCCGCTTGTATCCGTTTTGGGTGTCACTGCCATTTGCAGTGGCGTCA
TTGCTGCGAATGCTTCTGCGCTTGCCACCGTGGGACCGCAGCTCACGTTA
GCCATCGCAATCATGCACATTTTGGGCGGCATTTTGGGCTATGTTATTGC
CTCAGTGTTCGGACTTGATTCCTCGTCGAGGAGAACAGTCAGCATCGAAG
TGATGATGCAAAACTCCACTCTGGCGGTGTCTCTTGCTAACGCCCACTTC
GCCAACCCGGTTACTGCTATACCGGGCGCTATTAGTGCCGTAATGCATTC
TGTTTTTGGTTCAGTTCTTGCGGGAATCTGGAGGTTTTCTGCCTCGAGGG
ATGACGTTCCGCTCATTGAAGCGAAGCCTGTTGCGGTTGATTCTCTATAT
CGCGAACTGCACGAGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:323278..324645+

>Ggra1677.t1 ID=Ggra1677.t1|Name=Ggra1677.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000050_pilon:323278..324645+ (Gracilaria gracilis GNS1m male)
ATGGCAGCGCGAGGTGCACTGAGCTCCAACTCCGTCCGCCTCAACCAGCC
GCCCTCGCCGCCTCCTCGCGTCGCTGACGTCTGGTTAGAGACCGATGCCA
CGCCCTCCACCGCCCACAGCTTTGCCATGAGCCCCTTCTCCGCGTTTGCG
CCGCTTTCCGTGCCAACAAGTCTTCGTCGCCACGCCCACCAGCGCGAAGC
ACGCACTTGCCGTGCCACTCGCACCCCTTTTCTCGCGGGAGCCACTCGTC
ATGCGCTACGCCACCGCCTCACGCCATCCCAAGTTCATCGCTCGTCCATC
CCCACGGCTTGTGATCTCTCGCGGCCGTCTCCGTCGTCTCGCCGGCCTGT
ACCATCTGATCCCGCTCCTCATCGCGCCAACAGCGTGCTGCAAGTCTTGA
CCAACTTGTTTCCGCTATGGGTTTCCCTGGGCGCCGTGCTTGCCTTCTTG
CAGCCCGCGACGTTCCTCTGGTTTCGCTCATCCTACATTGTACCCACTCT
TTCCCTCATCATGTTGGGCATGGGGCTCACCATAACCCCGCAATCGTTTT
CCGCTGTTTTCCGTACGCCGCGACAAGTTTTGTTGGGCGCTTGCGCTCAG
TACACCCTCATGCCACTCCTTGCGCGATCGCTGTCACTCGTTCTGCGTCT
TCCACCCGCACTCGCAGCGGGGGTAGTTTTGGTCGGCGTCTGTCCCGGTG
GCGCTGCAAGTAATGTAATCTGCCTCCTCGCCCGCGCAAACGTCGCTTTA
TCGGTTGTATTGACGTTGGTATCAACTCTTCTCAGTGTACTCTTAATCCC
CTCTCTCATGAGTGTTCTGGCGGGTACGTTGGTACCAGTCGCCCCAATTC
CCTTACTAGTTAGCACTGCACAAGTCGTTCTTTTGCCTCTTCTACTTGGC
TACGTACTGCAGACCACTTTTCCGCGCATTGTATCTGCTGCATCCGATTT
TCTTCCGCTTGTATCCGTTTTGGGTGTCACTGCCATTTGCAGTGGCGTCA
TTGCTGCGAATGCTTCTGCGCTTGCCACCGTGGGACCGCAGCTCACGTTA
GCCATCGCAATCATGCACATTTTGGGCGGCATTTTGGGCTATGTTATTGC
CTCAGTGTTCGGACTTGATTCCTCGTCGAGGAGAACAGTCAGCATCGAAG
TGATGATGCAAAACTCCACTCTGGCGGTGTCTCTTGCTAACGCCCACTTC
GCCAACCCGGTTACTGCTATACCGGGCGCTATTAGTGCCGTAATGCATTC
TGTTTTTGGTTCAGTTCTTGCGGGAATCTGGAGGTTTTCTGCCTCGAGGG
ATGACGTTCCGCTCATTGAAGCGAAGCCTGTTGCGGTTGATTCTCTATAT
CGCGAACTGCACGAGTGA
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