Ggra1675.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1675.t1
Unique NameGgra1675.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:319438..321033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI226CT
PFAMsDHHC
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006497,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0012505,GO:0016409,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Evalue3.3e-28
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1675Ggra1675Gracilaria gracilis GNS1m malegenetig00000050_pilon 319438..321033 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1675.t1.start1Ggra1675.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 319438..319440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1675.t1.CDS1Ggra1675.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 319438..321033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1675.t1.exon1Ggra1675.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 319438..321033 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1675.t1.stop1Ggra1675.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 321031..321033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1675.t1Ggra1675.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 319438..321033 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1675.t1 ID=Ggra1675.t1|Name=Ggra1675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MEQSPSVSALIRAGDLASLLQRLTDPSLPEELLHPDDNGHTPLHWAALAP
APILATLLPLAPRIDALSTNPAQLHQTPLHWACVSAPLQNIKALLDAGAD
PSLRDASGYDAPIHAAQYGRVAVLHVILSRWPVLARTTDNDAHTLLQWAA
YYGHMSCVQYMLIVHSVHIDATDAQGATALHRAVQRNHILIAKALIRAGA
DDTITDANGNTPYQLSSQKKNTDTSCSPGEHAHTSFTHEGHNPRKSIKRY
GPVLFYYLTLAISFARFIQITIGTGFISVPVLVFSHLLLFTSFICHLITT
YGNPGDVVKGTRESLVRHIERCIEIDRDIDLLPSAYCYTCLAVKPSRSKH
STERDVCVRMFDHECPWVNNSIGLGTRRQFLLLVLSTPIVQVFFIFIVMH
AAVRAPSIGSFVQGHLLETFLVLIHAILAVFCIMLFITQVQLVARGRTTY
EHLVAMRDNITSNPHDRGVWQNFVAFITSTGPGTGYPFVELNLKSLRDVV
FASGKPATSAEQQRLALKEEKEENQLPIENV*
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spliced messenger RNA

>Ggra1675.t1 ID=Ggra1675.t1|Name=Ggra1675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000050_pilon:319438..321033+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAGTCCCCCTCCGTTAGTGCTCTCATCCGCGCTGGTGACCTGGC
CTCTTTGCTGCAGCGTCTCACCGACCCATCTCTGCCAGAAGAGCTTCTGC
ATCCCGACGACAACGGTCACACCCCTCTGCACTGGGCGGCGCTTGCGCCA
GCTCCAATTCTGGCCACTCTTCTGCCTCTTGCTCCTCGAATCGATGCATT
ATCAACGAACCCCGCTCAATTACACCAAACACCGCTCCATTGGGCGTGTG
TTTCCGCTCCACTGCAGAACATCAAAGCTTTGTTGGATGCAGGTGCCGAT
CCATCTCTTCGTGATGCGAGTGGATACGACGCTCCAATTCATGCCGCCCA
GTATGGAAGAGTAGCAGTTCTTCATGTAATCCTGTCAAGATGGCCTGTCT
TGGCACGTACAACCGATAACGATGCTCATACTCTTCTGCAATGGGCGGCA
TATTACGGACACATGAGTTGTGTGCAATATATGCTAATTGTTCACTCAGT
CCATATTGATGCCACAGATGCGCAAGGCGCCACAGCATTGCACAGGGCTG
TCCAACGCAACCATATTTTGATCGCAAAGGCTCTCATTCGCGCAGGAGCC
GATGACACCATCACCGACGCCAATGGCAATACGCCATATCAGTTGTCATC
TCAAAAGAAGAACACTGATACATCATGCTCCCCAGGAGAACACGCTCACA
CCTCTTTCACGCACGAGGGACACAATCCAAGAAAGTCTATCAAGCGTTAT
GGCCCAGTCCTGTTTTATTATCTCACTTTAGCCATTTCGTTTGCGCGGTT
TATACAAATCACAATAGGCACGGGATTCATCAGCGTGCCAGTGCTTGTCT
TTTCACATTTACTTTTGTTTACTAGCTTCATATGCCATCTAATCACAACG
TACGGCAACCCCGGTGACGTTGTGAAGGGAACTCGTGAATCTCTAGTTCG
CCATATCGAAAGGTGCATTGAAATCGACAGAGACATCGACCTCCTACCGT
CCGCGTACTGTTACACATGCCTTGCCGTGAAACCCTCTCGGTCAAAGCAT
TCGACCGAGCGGGATGTGTGCGTTCGGATGTTTGATCACGAATGCCCTTG
GGTGAATAATTCTATTGGGTTGGGCACCAGAAGGCAGTTTTTGCTACTAG
TGCTTTCCACACCTATTGTTCAAGTGTTTTTTATCTTCATCGTCATGCAC
GCTGCCGTCAGGGCACCCTCTATAGGCTCTTTTGTTCAAGGCCATCTTTT
AGAAACATTCCTGGTTTTGATTCATGCTATATTGGCTGTGTTTTGCATCA
TGCTCTTTATAACTCAGGTTCAGCTTGTGGCAAGAGGAAGAACAACCTAC
GAACATCTTGTGGCGATGCGAGATAACATTACGTCGAATCCACATGACAG
AGGGGTTTGGCAAAACTTTGTCGCATTCATAACATCCACTGGCCCTGGAA
CGGGATATCCATTCGTAGAGCTGAACCTGAAATCTCTGAGGGACGTCGTT
TTCGCTTCCGGCAAACCTGCGACGAGTGCAGAACAACAAAGGCTAGCACT
GAAAGAAGAGAAGGAGGAAAACCAGTTACCAATTGAAAATGTGTAG
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protein sequence of Ggra1675.t1

>Ggra1675.t1 ID=Ggra1675.t1|Name=Ggra1675.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MEQSPSVSALIRAGDLASLLQRLTDPSLPEELLHPDDNGHTPLHWAALAP
APILATLLPLAPRIDALSTNPAQLHQTPLHWACVSAPLQNIKALLDAGAD
PSLRDASGYDAPIHAAQYGRVAVLHVILSRWPVLARTTDNDAHTLLQWAA
YYGHMSCVQYMLIVHSVHIDATDAQGATALHRAVQRNHILIAKALIRAGA
DDTITDANGNTPYQLSSQKKNTDTSCSPGEHAHTSFTHEGHNPRKSIKRY
GPVLFYYLTLAISFARFIQITIGTGFISVPVLVFSHLLLFTSFICHLITT
YGNPGDVVKGTRESLVRHIERCIEIDRDIDLLPSAYCYTCLAVKPSRSKH
STERDVCVRMFDHECPWVNNSIGLGTRRQFLLLVLSTPIVQVFFIFIVMH
AAVRAPSIGSFVQGHLLETFLVLIHAILAVFCIMLFITQVQLVARGRTTY
EHLVAMRDNITSNPHDRGVWQNFVAFITSTGPGTGYPFVELNLKSLRDVV
FASGKPATSAEQQRLALKEEKEENQLPIENV*
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mRNA from alignment at tig00000050_pilon:319438..321033+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1675.t1 ID=Ggra1675.t1|Name=Ggra1675.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000050_pilon:319438..321033+ (Gracilaria gracilis GNS1m male)
ATGGAGCAGTCCCCCTCCGTTAGTGCTCTCATCCGCGCTGGTGACCTGGC
CTCTTTGCTGCAGCGTCTCACCGACCCATCTCTGCCAGAAGAGCTTCTGC
ATCCCGACGACAACGGTCACACCCCTCTGCACTGGGCGGCGCTTGCGCCA
GCTCCAATTCTGGCCACTCTTCTGCCTCTTGCTCCTCGAATCGATGCATT
ATCAACGAACCCCGCTCAATTACACCAAACACCGCTCCATTGGGCGTGTG
TTTCCGCTCCACTGCAGAACATCAAAGCTTTGTTGGATGCAGGTGCCGAT
CCATCTCTTCGTGATGCGAGTGGATACGACGCTCCAATTCATGCCGCCCA
GTATGGAAGAGTAGCAGTTCTTCATGTAATCCTGTCAAGATGGCCTGTCT
TGGCACGTACAACCGATAACGATGCTCATACTCTTCTGCAATGGGCGGCA
TATTACGGACACATGAGTTGTGTGCAATATATGCTAATTGTTCACTCAGT
CCATATTGATGCCACAGATGCGCAAGGCGCCACAGCATTGCACAGGGCTG
TCCAACGCAACCATATTTTGATCGCAAAGGCTCTCATTCGCGCAGGAGCC
GATGACACCATCACCGACGCCAATGGCAATACGCCATATCAGTTGTCATC
TCAAAAGAAGAACACTGATACATCATGCTCCCCAGGAGAACACGCTCACA
CCTCTTTCACGCACGAGGGACACAATCCAAGAAAGTCTATCAAGCGTTAT
GGCCCAGTCCTGTTTTATTATCTCACTTTAGCCATTTCGTTTGCGCGGTT
TATACAAATCACAATAGGCACGGGATTCATCAGCGTGCCAGTGCTTGTCT
TTTCACATTTACTTTTGTTTACTAGCTTCATATGCCATCTAATCACAACG
TACGGCAACCCCGGTGACGTTGTGAAGGGAACTCGTGAATCTCTAGTTCG
CCATATCGAAAGGTGCATTGAAATCGACAGAGACATCGACCTCCTACCGT
CCGCGTACTGTTACACATGCCTTGCCGTGAAACCCTCTCGGTCAAAGCAT
TCGACCGAGCGGGATGTGTGCGTTCGGATGTTTGATCACGAATGCCCTTG
GGTGAATAATTCTATTGGGTTGGGCACCAGAAGGCAGTTTTTGCTACTAG
TGCTTTCCACACCTATTGTTCAAGTGTTTTTTATCTTCATCGTCATGCAC
GCTGCCGTCAGGGCACCCTCTATAGGCTCTTTTGTTCAAGGCCATCTTTT
AGAAACATTCCTGGTTTTGATTCATGCTATATTGGCTGTGTTTTGCATCA
TGCTCTTTATAACTCAGGTTCAGCTTGTGGCAAGAGGAAGAACAACCTAC
GAACATCTTGTGGCGATGCGAGATAACATTACGTCGAATCCACATGACAG
AGGGGTTTGGCAAAACTTTGTCGCATTCATAACATCCACTGGCCCTGGAA
CGGGATATCCATTCGTAGAGCTGAACCTGAAATCTCTGAGGGACGTCGTT
TTCGCTTCCGGCAAACCTGCGACGAGTGCAGAACAACAAAGGCTAGCACT
GAAAGAAGAGAAGGAGGAAAACCAGTTACCAATTGAAAATGTGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:319438..321033+

>Ggra1675.t1 ID=Ggra1675.t1|Name=Ggra1675.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000050_pilon:319438..321033+ (Gracilaria gracilis GNS1m male)
ATGGAGCAGTCCCCCTCCGTTAGTGCTCTCATCCGCGCTGGTGACCTGGC
CTCTTTGCTGCAGCGTCTCACCGACCCATCTCTGCCAGAAGAGCTTCTGC
ATCCCGACGACAACGGTCACACCCCTCTGCACTGGGCGGCGCTTGCGCCA
GCTCCAATTCTGGCCACTCTTCTGCCTCTTGCTCCTCGAATCGATGCATT
ATCAACGAACCCCGCTCAATTACACCAAACACCGCTCCATTGGGCGTGTG
TTTCCGCTCCACTGCAGAACATCAAAGCTTTGTTGGATGCAGGTGCCGAT
CCATCTCTTCGTGATGCGAGTGGATACGACGCTCCAATTCATGCCGCCCA
GTATGGAAGAGTAGCAGTTCTTCATGTAATCCTGTCAAGATGGCCTGTCT
TGGCACGTACAACCGATAACGATGCTCATACTCTTCTGCAATGGGCGGCA
TATTACGGACACATGAGTTGTGTGCAATATATGCTAATTGTTCACTCAGT
CCATATTGATGCCACAGATGCGCAAGGCGCCACAGCATTGCACAGGGCTG
TCCAACGCAACCATATTTTGATCGCAAAGGCTCTCATTCGCGCAGGAGCC
GATGACACCATCACCGACGCCAATGGCAATACGCCATATCAGTTGTCATC
TCAAAAGAAGAACACTGATACATCATGCTCCCCAGGAGAACACGCTCACA
CCTCTTTCACGCACGAGGGACACAATCCAAGAAAGTCTATCAAGCGTTAT
GGCCCAGTCCTGTTTTATTATCTCACTTTAGCCATTTCGTTTGCGCGGTT
TATACAAATCACAATAGGCACGGGATTCATCAGCGTGCCAGTGCTTGTCT
TTTCACATTTACTTTTGTTTACTAGCTTCATATGCCATCTAATCACAACG
TACGGCAACCCCGGTGACGTTGTGAAGGGAACTCGTGAATCTCTAGTTCG
CCATATCGAAAGGTGCATTGAAATCGACAGAGACATCGACCTCCTACCGT
CCGCGTACTGTTACACATGCCTTGCCGTGAAACCCTCTCGGTCAAAGCAT
TCGACCGAGCGGGATGTGTGCGTTCGGATGTTTGATCACGAATGCCCTTG
GGTGAATAATTCTATTGGGTTGGGCACCAGAAGGCAGTTTTTGCTACTAG
TGCTTTCCACACCTATTGTTCAAGTGTTTTTTATCTTCATCGTCATGCAC
GCTGCCGTCAGGGCACCCTCTATAGGCTCTTTTGTTCAAGGCCATCTTTT
AGAAACATTCCTGGTTTTGATTCATGCTATATTGGCTGTGTTTTGCATCA
TGCTCTTTATAACTCAGGTTCAGCTTGTGGCAAGAGGAAGAACAACCTAC
GAACATCTTGTGGCGATGCGAGATAACATTACGTCGAATCCACATGACAG
AGGGGTTTGGCAAAACTTTGTCGCATTCATAACATCCACTGGCCCTGGAA
CGGGATATCCATTCGTAGAGCTGAACCTGAAATCTCTGAGGGACGTCGTT
TTCGCTTCCGGCAAACCTGCGACGAGTGCAGAACAACAAAGGCTAGCACT
GAAAGAAGAGAAGGAGGAAAACCAGTTACCAATTGAAAATGTGTAG
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