Ggra1674.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1674.t1
Unique NameGgra1674.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:316905..318291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704754.1
Preferred nameCDK7
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K02202
KEGG Pathwayko03022,ko03420,ko04110,map03022,map03420,map04110
KEGG ModuleM00290
GOsGO:0000079,GO:0000228,GO:0000278,GO:0000307,GO:0000428,GO:0000785,GO:0000790,GO:0001109,GO:0001111,GO:0001932,GO:0001934,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007275,GO:0008022,GO:0008047,GO:0008094,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008353,GO:0009058,GO:0009059,GO:0009299,GO:0009301,GO:0009452,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0012501,GO:0014070,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016301,GO:0016310,GO:0016462,GO:0016591,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019907,GO:0019908,GO:0019912,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030234,GO:0030295,GO:0030518,GO:0030521,GO:0030522,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031503,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032806,GO:0032870,GO:0032968,GO:0032991,GO:0033036,GO:0033554,GO:0033674,GO:0033993,GO:0034243,GO:0034402,GO:0034613,GO:0034622,GO:0034629,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035257,GO:0035258,GO:0036031,GO:0036211,GO:0036260,GO:0042221,GO:0042325,GO:0042327,GO:0042623,GO:0042795,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043401,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0044877,GO:0045448,GO:0045786,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048856,GO:0050681,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051427,GO:0051641,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070816,GO:0070817,GO:0070887,GO:0070985,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071619,GO:0071620,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0071900,GO:0080090,GO:0090304,GO:0090575,GO:0097472,GO:0097659,GO:0098772,GO:0098781,GO:0140096,GO:0140110,GO:0150005,GO:1900018,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901921,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1903654,GO:1903655,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue1.4e-121
EggNOG OGsKOG0659@1|root,KOG0659@2759|Eukaryota
EC2.7.11.22,2.7.11.23
DescriptionBelongs to the protein kinase superfamily
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1674Ggra1674Gracilaria gracilis GNS1m malegenetig00000050_pilon 316905..318291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1Ggra1674.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 316905..318291 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1.stop1Ggra1674.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 316905..316907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1.CDS1Ggra1674.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 316905..317759 -
Ggra1674.t1.CDS2Ggra1674.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 317823..317903 -
Ggra1674.t1.CDS3Ggra1674.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 317993..318072 -
Ggra1674.t1.CDS4Ggra1674.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000050_pilon 318225..318291 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1.exon1Ggra1674.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 316905..317759 -
Ggra1674.t1.exon2Ggra1674.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 317823..317903 -
Ggra1674.t1.exon3Ggra1674.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 317993..318072 -
Ggra1674.t1.exon4Ggra1674.t1.exon4Gracilaria gracilis GNS1m maleexontig00000050_pilon 318225..318291 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1.intron1Ggra1674.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 317760..317822 -
Ggra1674.t1.intron2Ggra1674.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 317904..317992 -
Ggra1674.t1.intron3Ggra1674.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000050_pilon 318073..318224 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1674.t1.start1Ggra1674.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 318289..318291 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1674.t1 ID=Ggra1674.t1|Name=Ggra1674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MVASLHGENRYEKIKALGEGTVGVVSKARDRNKKKGDQNRIVAIKKIRMG
HRKDGVNVTALREIKLLQELSHPNVIGLLDVYAGKNNVNMVIEYCVTDLE
EVIRDRTLFLTPAEIKCCLKMILEGIAMCHEKWVLHRDLKPSNILIGADG
NLKIADFGLARLHASPKARLTHQVITRWYRPPELLYAAKTYGPAVDVWSI
GCIFAELILRIPYLPGDSDIDQLSKIFQARGTPTKEDWPDHDTLPAFVQF
KETPPPDQKQFFVAASPAALDLMNEMLHLNPHKRISAKDALNHTYFVEEL
PPACDAETLLEKIRSGNTVKDRGSPDDEADDSEDDDAQNDSQRKPSERAK
ATGQRKLSFS*
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spliced messenger RNA

>Ggra1674.t1 ID=Ggra1674.t1|Name=Ggra1674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000050_pilon:316905..318291- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCTCGCTACATGGTGAAAATCGTTACGAGAAGATTAAGGCCCT
TGGAGAAGGAACTGTAGGTGTTGTGTCGAAGGCCAGAGATCGAAACAAAA
AGAAAGGGGACCAAAACCGCATCGTCGCGATTAAGAAGATTCGAATGGGA
CATCGAAAAGATGGAGTTAACGTCACGGCTCTTCGAGAGATTAAGCTTCT
CCAGGAATTAAGTCATCCAAATGTTATTGGGCTTCTGGATGTTTACGCTG
GAAAGAATAACGTAAATATGGTGATCGAGTATTGCGTTACTGATCTTGAG
GAGGTAATTCGCGACCGGACATTGTTTCTGACTCCAGCGGAAATCAAATG
CTGCCTGAAGATGATCCTTGAAGGGATTGCAATGTGCCATGAAAAATGGG
TACTCCATCGCGATTTAAAGCCGAGTAATATTCTCATAGGCGCAGATGGT
AATCTAAAGATTGCGGATTTTGGTTTGGCTCGGCTCCATGCCTCTCCAAA
AGCACGATTAACGCACCAAGTCATAACGAGATGGTACAGACCTCCTGAAC
TCTTGTATGCAGCAAAAACATATGGCCCAGCAGTGGATGTATGGTCTATT
GGCTGCATATTTGCGGAGCTAATCCTCAGGATCCCGTACCTACCAGGAGA
TTCTGATATTGATCAGCTGTCTAAAATATTTCAAGCTCGCGGAACCCCGA
CAAAGGAAGACTGGCCTGACCATGATACTCTCCCAGCTTTCGTTCAGTTC
AAAGAAACCCCACCTCCTGACCAAAAGCAATTCTTTGTTGCTGCTTCACC
TGCTGCCCTTGATCTTATGAACGAAATGCTTCATCTAAATCCGCACAAGA
GAATTTCCGCGAAGGATGCTCTGAATCATACATATTTTGTAGAAGAGCTA
CCCCCAGCATGCGATGCTGAAACCTTGCTTGAAAAGATTCGAAGTGGAAA
TACGGTGAAGGACAGAGGAAGTCCAGACGACGAAGCTGATGATAGCGAAG
ATGATGACGCACAGAATGATTCGCAGAGAAAGCCGAGCGAGCGAGCAAAA
GCCACTGGACAACGGAAACTATCATTTTCATGA
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protein sequence of Ggra1674.t1

>Ggra1674.t1 ID=Ggra1674.t1|Name=Ggra1674.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MVASLHGENRYEKIKALGEGTVGVVSKARDRNKKKGDQNRIVAIKKIRMG
HRKDGVNVTALREIKLLQELSHPNVIGLLDVYAGKNNVNMVIEYCVTDLE
EVIRDRTLFLTPAEIKCCLKMILEGIAMCHEKWVLHRDLKPSNILIGADG
NLKIADFGLARLHASPKARLTHQVITRWYRPPELLYAAKTYGPAVDVWSI
GCIFAELILRIPYLPGDSDIDQLSKIFQARGTPTKEDWPDHDTLPAFVQF
KETPPPDQKQFFVAASPAALDLMNEMLHLNPHKRISAKDALNHTYFVEEL
PPACDAETLLEKIRSGNTVKDRGSPDDEADDSEDDDAQNDSQRKPSERAK
ATGQRKLSFS*
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mRNA from alignment at tig00000050_pilon:316905..318291-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1674.t1 ID=Ggra1674.t1|Name=Ggra1674.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1387bp|location=Sequence derived from alignment at tig00000050_pilon:316905..318291- (Gracilaria gracilis GNS1m male)
ATGGTTGCCTCGCTACATGGTGAAAATCGTTACGAGAAGATTAAGGCCCT
TGGAGAAGGAACTGTAGGTTAATGCACATATGAAACCCTCTTGTTACAAT
GCTCTGAACGCTAACCTGGATTATATGTCAACCATTCTGATAGTTTGGTA
TGTGCCTTCTAATTGCAAAAGTATCTACATGTCCGTAATGCTCTAACTTA
TCTCTTCCCTGTATCATAGGTGTTGTGTCGAAGGCCAGAGATCGAAACAA
AAAGAAAGGGGACCAAAACCGCATCGTCGCGATTAAGAAGATTCGAATGG
TAAGGATGATCTCCACGGATCGTTTTCCTACTAATTGGTTTTCCTAACAG
CTTTATTCGACCTTTTCATCTCGTAACCCCACATACAGGGACATCGAAAA
GATGGAGTTAACGTCACGGCTCTTCGAGAGATTAAGCTTCTCCAGGAATT
AAGTCATCCAAATGTTATTGTACGTGTTCAGTCTTCTCATCATTGTATCG
GCTTTTCTGACCATTAAGCTTCTTGAATCCAGGGGCTTCTGGATGTTTAC
GCTGGAAAGAATAACGTAAATATGGTGATCGAGTATTGCGTTACTGATCT
TGAGGAGGTAATTCGCGACCGGACATTGTTTCTGACTCCAGCGGAAATCA
AATGCTGCCTGAAGATGATCCTTGAAGGGATTGCAATGTGCCATGAAAAA
TGGGTACTCCATCGCGATTTAAAGCCGAGTAATATTCTCATAGGCGCAGA
TGGTAATCTAAAGATTGCGGATTTTGGTTTGGCTCGGCTCCATGCCTCTC
CAAAAGCACGATTAACGCACCAAGTCATAACGAGATGGTACAGACCTCCT
GAACTCTTGTATGCAGCAAAAACATATGGCCCAGCAGTGGATGTATGGTC
TATTGGCTGCATATTTGCGGAGCTAATCCTCAGGATCCCGTACCTACCAG
GAGATTCTGATATTGATCAGCTGTCTAAAATATTTCAAGCTCGCGGAACC
CCGACAAAGGAAGACTGGCCTGACCATGATACTCTCCCAGCTTTCGTTCA
GTTCAAAGAAACCCCACCTCCTGACCAAAAGCAATTCTTTGTTGCTGCTT
CACCTGCTGCCCTTGATCTTATGAACGAAATGCTTCATCTAAATCCGCAC
AAGAGAATTTCCGCGAAGGATGCTCTGAATCATACATATTTTGTAGAAGA
GCTACCCCCAGCATGCGATGCTGAAACCTTGCTTGAAAAGATTCGAAGTG
GAAATACGGTGAAGGACAGAGGAAGTCCAGACGACGAAGCTGATGATAGC
GAAGATGATGACGCACAGAATGATTCGCAGAGAAAGCCGAGCGAGCGAGC
AAAAGCCACTGGACAACGGAAACTATCATTTTCATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:316905..318291-

>Ggra1674.t1 ID=Ggra1674.t1|Name=Ggra1674.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000050_pilon:316905..318291- (Gracilaria gracilis GNS1m male)
ATGGTTGCCTCGCTACATGGTGAAAATCGTTACGAGAAGATTAAGGCCCT
TGGAGAAGGAACTGTAGGTGTTGTGTCGAAGGCCAGAGATCGAAACAAAA
AGAAAGGGGACCAAAACCGCATCGTCGCGATTAAGAAGATTCGAATGGGA
CATCGAAAAGATGGAGTTAACGTCACGGCTCTTCGAGAGATTAAGCTTCT
CCAGGAATTAAGTCATCCAAATGTTATTGGGCTTCTGGATGTTTACGCTG
GAAAGAATAACGTAAATATGGTGATCGAGTATTGCGTTACTGATCTTGAG
GAGGTAATTCGCGACCGGACATTGTTTCTGACTCCAGCGGAAATCAAATG
CTGCCTGAAGATGATCCTTGAAGGGATTGCAATGTGCCATGAAAAATGGG
TACTCCATCGCGATTTAAAGCCGAGTAATATTCTCATAGGCGCAGATGGT
AATCTAAAGATTGCGGATTTTGGTTTGGCTCGGCTCCATGCCTCTCCAAA
AGCACGATTAACGCACCAAGTCATAACGAGATGGTACAGACCTCCTGAAC
TCTTGTATGCAGCAAAAACATATGGCCCAGCAGTGGATGTATGGTCTATT
GGCTGCATATTTGCGGAGCTAATCCTCAGGATCCCGTACCTACCAGGAGA
TTCTGATATTGATCAGCTGTCTAAAATATTTCAAGCTCGCGGAACCCCGA
CAAAGGAAGACTGGCCTGACCATGATACTCTCCCAGCTTTCGTTCAGTTC
AAAGAAACCCCACCTCCTGACCAAAAGCAATTCTTTGTTGCTGCTTCACC
TGCTGCCCTTGATCTTATGAACGAAATGCTTCATCTAAATCCGCACAAGA
GAATTTCCGCGAAGGATGCTCTGAATCATACATATTTTGTAGAAGAGCTA
CCCCCAGCATGCGATGCTGAAACCTTGCTTGAAAAGATTCGAAGTGGAAA
TACGGTGAAGGACAGAGGAAGTCCAGACGACGAAGCTGATGATAGCGAAG
ATGATGACGCACAGAATGATTCGCAGAGAAAGCCGAGCGAGCGAGCAAAA
GCCACTGGACAACGGAAACTATCATTTTCATGA
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