Ggra1673.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1673.t1
Unique NameGgra1673.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:315666..316832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1673Ggra1673Gracilaria gracilis GNS1m malegenetig00000050_pilon 315666..316832 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1673.t1.start1Ggra1673.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 315666..315668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1673.t1.CDS1Ggra1673.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 315666..316832 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1673.t1.exon1Ggra1673.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 315666..316832 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1673.t1.stop1Ggra1673.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 316830..316832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1673.t1Ggra1673.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 315666..316832 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1673.t1 ID=Ggra1673.t1|Name=Ggra1673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MFYKARSGQLNNQLISFFNALTIAKESNAVLVAPFAFYGSESYIDFAKSQ
GFFYRLYEASDLYIYQRLLKYLGLFYRHDELVGDYLDGSLLNKTQPVVSI
MQFLRSPGADYLRTFPHVLARKGDAPFYYMSLGKRNMFDSNVNMRGRASQ
SDPDSALLSPASRRELDCNFNVSEYFRGLPYYAGVNGNYLFLSRLYRSHS
LNCTASNRYWLELRKHVQPRVEIRRLVDEHFVHWGKVLSVHLRLFPFDIG
KFSRSAFCEHFLARFEKHINQSDSIYFAYSASSVDSVAIISELRKRLMGK
RIVTANDFGLLTTRGAVFSKRYGVPLLDMWICVKSHFFVGRLGSSLSWNV
AYWREALSPAHSRTTHEFYELKGFSENGQSNPTDSYGF*
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spliced messenger RNA

>Ggra1673.t1 ID=Ggra1673.t1|Name=Ggra1673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000050_pilon:315666..316832+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTATAAGGCGCGGAGCGGTCAACTAAACAACCAGCTCATTTCATT
CTTCAACGCCTTGACGATAGCGAAGGAGTCGAATGCTGTTCTGGTTGCCC
CGTTTGCTTTTTATGGTTCTGAGTCTTATATTGACTTTGCCAAATCCCAG
GGTTTCTTCTATCGCCTGTACGAAGCTTCTGATCTGTACATCTATCAACG
TCTCCTCAAATACTTGGGCTTGTTCTATAGGCACGACGAATTGGTCGGGG
ACTACCTCGATGGATCTTTGCTAAATAAGACACAGCCTGTCGTGAGCATA
ATGCAATTCCTTCGTTCCCCTGGAGCCGATTACCTCAGGACGTTTCCGCA
TGTATTGGCACGAAAAGGCGACGCTCCTTTCTATTACATGTCGCTAGGGA
AGAGAAACATGTTTGACTCTAATGTCAACATGCGGGGTCGAGCATCTCAG
AGCGATCCAGATTCCGCATTGCTAAGTCCGGCCAGTCGCCGAGAGCTCGA
TTGCAACTTCAACGTTTCCGAATACTTTCGCGGACTGCCGTACTATGCCG
GTGTTAACGGAAATTACTTGTTCTTATCTCGTCTTTATCGCAGTCATTCT
CTTAACTGTACGGCGTCCAATCGGTATTGGTTGGAGCTTCGAAAACATGT
GCAGCCCCGTGTCGAAATACGACGTTTAGTGGATGAGCACTTTGTTCATT
GGGGAAAAGTATTGTCGGTTCACCTGAGACTGTTCCCATTTGATATCGGA
AAGTTTTCAAGATCAGCATTTTGTGAACACTTCCTGGCGCGTTTCGAGAA
ACACATCAACCAGTCCGATTCGATCTACTTCGCGTATTCCGCTAGTTCAG
TAGATTCTGTTGCCATAATATCGGAACTGCGCAAAAGATTGATGGGAAAG
AGAATAGTGACAGCCAACGATTTTGGGTTATTGACAACGCGGGGGGCCGT
GTTCAGCAAGCGGTATGGGGTCCCGCTCCTGGACATGTGGATCTGCGTCA
AAAGTCACTTCTTTGTTGGTCGTCTTGGGTCCTCACTCTCGTGGAATGTA
GCGTATTGGAGAGAGGCATTGTCTCCCGCCCATTCACGAACAACTCACGA
GTTTTATGAACTAAAGGGGTTCTCAGAAAACGGCCAATCTAACCCAACAG
ATTCATATGGATTCTGA
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protein sequence of Ggra1673.t1

>Ggra1673.t1 ID=Ggra1673.t1|Name=Ggra1673.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MFYKARSGQLNNQLISFFNALTIAKESNAVLVAPFAFYGSESYIDFAKSQ
GFFYRLYEASDLYIYQRLLKYLGLFYRHDELVGDYLDGSLLNKTQPVVSI
MQFLRSPGADYLRTFPHVLARKGDAPFYYMSLGKRNMFDSNVNMRGRASQ
SDPDSALLSPASRRELDCNFNVSEYFRGLPYYAGVNGNYLFLSRLYRSHS
LNCTASNRYWLELRKHVQPRVEIRRLVDEHFVHWGKVLSVHLRLFPFDIG
KFSRSAFCEHFLARFEKHINQSDSIYFAYSASSVDSVAIISELRKRLMGK
RIVTANDFGLLTTRGAVFSKRYGVPLLDMWICVKSHFFVGRLGSSLSWNV
AYWREALSPAHSRTTHEFYELKGFSENGQSNPTDSYGF*
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mRNA from alignment at tig00000050_pilon:315666..316832+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1673.t1 ID=Ggra1673.t1|Name=Ggra1673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000050_pilon:315666..316832+ (Gracilaria gracilis GNS1m male)
ATGTTTTATAAGGCGCGGAGCGGTCAACTAAACAACCAGCTCATTTCATT
CTTCAACGCCTTGACGATAGCGAAGGAGTCGAATGCTGTTCTGGTTGCCC
CGTTTGCTTTTTATGGTTCTGAGTCTTATATTGACTTTGCCAAATCCCAG
GGTTTCTTCTATCGCCTGTACGAAGCTTCTGATCTGTACATCTATCAACG
TCTCCTCAAATACTTGGGCTTGTTCTATAGGCACGACGAATTGGTCGGGG
ACTACCTCGATGGATCTTTGCTAAATAAGACACAGCCTGTCGTGAGCATA
ATGCAATTCCTTCGTTCCCCTGGAGCCGATTACCTCAGGACGTTTCCGCA
TGTATTGGCACGAAAAGGCGACGCTCCTTTCTATTACATGTCGCTAGGGA
AGAGAAACATGTTTGACTCTAATGTCAACATGCGGGGTCGAGCATCTCAG
AGCGATCCAGATTCCGCATTGCTAAGTCCGGCCAGTCGCCGAGAGCTCGA
TTGCAACTTCAACGTTTCCGAATACTTTCGCGGACTGCCGTACTATGCCG
GTGTTAACGGAAATTACTTGTTCTTATCTCGTCTTTATCGCAGTCATTCT
CTTAACTGTACGGCGTCCAATCGGTATTGGTTGGAGCTTCGAAAACATGT
GCAGCCCCGTGTCGAAATACGACGTTTAGTGGATGAGCACTTTGTTCATT
GGGGAAAAGTATTGTCGGTTCACCTGAGACTGTTCCCATTTGATATCGGA
AAGTTTTCAAGATCAGCATTTTGTGAACACTTCCTGGCGCGTTTCGAGAA
ACACATCAACCAGTCCGATTCGATCTACTTCGCGTATTCCGCTAGTTCAG
TAGATTCTGTTGCCATAATATCGGAACTGCGCAAAAGATTGATGGGAAAG
AGAATAGTGACAGCCAACGATTTTGGGTTATTGACAACGCGGGGGGCCGT
GTTCAGCAAGCGGTATGGGGTCCCGCTCCTGGACATGTGGATCTGCGTCA
AAAGTCACTTCTTTGTTGGTCGTCTTGGGTCCTCACTCTCGTGGAATGTA
GCGTATTGGAGAGAGGCATTGTCTCCCGCCCATTCACGAACAACTCACGA
GTTTTATGAACTAAAGGGGTTCTCAGAAAACGGCCAATCTAACCCAACAG
ATTCATATGGATTCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:315666..316832+

>Ggra1673.t1 ID=Ggra1673.t1|Name=Ggra1673.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000050_pilon:315666..316832+ (Gracilaria gracilis GNS1m male)
ATGTTTTATAAGGCGCGGAGCGGTCAACTAAACAACCAGCTCATTTCATT
CTTCAACGCCTTGACGATAGCGAAGGAGTCGAATGCTGTTCTGGTTGCCC
CGTTTGCTTTTTATGGTTCTGAGTCTTATATTGACTTTGCCAAATCCCAG
GGTTTCTTCTATCGCCTGTACGAAGCTTCTGATCTGTACATCTATCAACG
TCTCCTCAAATACTTGGGCTTGTTCTATAGGCACGACGAATTGGTCGGGG
ACTACCTCGATGGATCTTTGCTAAATAAGACACAGCCTGTCGTGAGCATA
ATGCAATTCCTTCGTTCCCCTGGAGCCGATTACCTCAGGACGTTTCCGCA
TGTATTGGCACGAAAAGGCGACGCTCCTTTCTATTACATGTCGCTAGGGA
AGAGAAACATGTTTGACTCTAATGTCAACATGCGGGGTCGAGCATCTCAG
AGCGATCCAGATTCCGCATTGCTAAGTCCGGCCAGTCGCCGAGAGCTCGA
TTGCAACTTCAACGTTTCCGAATACTTTCGCGGACTGCCGTACTATGCCG
GTGTTAACGGAAATTACTTGTTCTTATCTCGTCTTTATCGCAGTCATTCT
CTTAACTGTACGGCGTCCAATCGGTATTGGTTGGAGCTTCGAAAACATGT
GCAGCCCCGTGTCGAAATACGACGTTTAGTGGATGAGCACTTTGTTCATT
GGGGAAAAGTATTGTCGGTTCACCTGAGACTGTTCCCATTTGATATCGGA
AAGTTTTCAAGATCAGCATTTTGTGAACACTTCCTGGCGCGTTTCGAGAA
ACACATCAACCAGTCCGATTCGATCTACTTCGCGTATTCCGCTAGTTCAG
TAGATTCTGTTGCCATAATATCGGAACTGCGCAAAAGATTGATGGGAAAG
AGAATAGTGACAGCCAACGATTTTGGGTTATTGACAACGCGGGGGGCCGT
GTTCAGCAAGCGGTATGGGGTCCCGCTCCTGGACATGTGGATCTGCGTCA
AAAGTCACTTCTTTGTTGGTCGTCTTGGGTCCTCACTCTCGTGGAATGTA
GCGTATTGGAGAGAGGCATTGTCTCCCGCCCATTCACGAACAACTCACGA
GTTTTATGAACTAAAGGGGTTCTCAGAAAACGGCCAATCTAACCCAACAG
ATTCATATGGATTCTGA
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