Ggra1672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1672.t1
Unique NameGgra1672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:312245..313474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1410628.JNKS01000010_gene3281
PFAMsGlyco_transf_92
Max annot lvl1239|Firmicutes
Evalue5.91e-11
EggNOG OGsCOG0463@1|root,COG0463@2|Bacteria,1VCNF@1239|Firmicutes
DescriptionGlycosyltransferase family 92
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1672Ggra1672Gracilaria gracilis GNS1m malegenetig00000050_pilon 312245..313474 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1672.t1.start1Ggra1672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 312245..312247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1672.t1.CDS1Ggra1672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 312245..313474 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1672.t1.exon1Ggra1672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 312245..313474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1672.t1.stop1Ggra1672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 313472..313474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1672.t1Ggra1672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 312245..313474 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1672.t1 ID=Ggra1672.t1|Name=Ggra1672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=410bp
MESSFRYILSACVISRRSSELMPEFVIRNYVAGVDHFYVYGDDDDDHEER
MRMHQIFEWLDDVVTYIPHGRGAPADKEDSKSYVQMRMYRHCLQKFGAGS
KWMTFIDTDEFFETHALQQIETRSFDRHRRAFLHDVLSKYDFLPVLCVRW
KSALTNGRILPPRSGEFLHDLFPRTCKLLVGDNGKLSARKTIMQTKYVDL
DQSPKNDEGIHKGFVFRGPGLYTNVTCKAHLGRNLEPPIHIVHYWSRDLS
SFLRKIRRGRPRKGVPTRTLYDLFARERMCEPEESVSSADIRHEHVSALL
RSFPISFRSTVDPASPEMALGVVQGTHSNSFSERVPAAHSNVTFCEKHVR
KLVTKISEGSDFSNTRYCEHRLSQACEVYRGSGFLRWPYPWAEYLSNCSA
DVNEEMIFV*
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spliced messenger RNA

>Ggra1672.t1 ID=Ggra1672.t1|Name=Ggra1672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000050_pilon:312245..313474+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTTCATTTCGTTACATTCTGTCGGCGTGTGTCATCAGTCGTCG
ATCAAGTGAACTTATGCCAGAGTTTGTCATTCGAAATTACGTCGCAGGAG
TTGATCACTTCTATGTTTATGGGGACGACGACGATGACCATGAAGAACGA
ATGCGGATGCATCAAATTTTCGAGTGGCTTGACGATGTTGTCACTTATAT
ACCACATGGTAGGGGTGCCCCGGCGGATAAGGAGGATTCTAAGTCGTACG
TACAAATGCGCATGTATCGACATTGCCTGCAAAAGTTTGGTGCTGGATCG
AAATGGATGACCTTCATCGACACCGACGAGTTCTTTGAAACTCATGCCCT
TCAACAAATTGAAACCAGATCTTTTGATCGACATCGTCGTGCTTTCCTGC
ACGACGTTTTGAGCAAGTACGATTTCCTTCCAGTTCTTTGCGTGCGATGG
AAGTCAGCGTTGACGAATGGACGAATTCTTCCGCCACGTTCTGGAGAGTT
CCTCCATGACTTATTTCCTAGAACATGCAAACTTCTTGTTGGAGACAATG
GCAAACTCTCTGCAAGAAAGACAATCATGCAAACCAAATATGTGGATCTA
GATCAAAGTCCAAAGAATGATGAAGGCATTCACAAGGGCTTTGTCTTTCG
AGGACCCGGATTATACACGAATGTGACATGTAAAGCTCATCTGGGAAGGA
ATCTAGAACCACCTATCCACATTGTGCACTATTGGAGTCGAGACCTATCC
AGCTTTCTGCGCAAAATCCGCCGTGGCAGACCGAGAAAAGGAGTACCCAC
GAGAACACTCTATGACTTATTCGCAAGAGAGAGAATGTGCGAACCTGAAG
AGAGTGTAAGTAGCGCTGACATACGCCATGAACATGTTTCCGCTCTCTTA
CGAAGCTTTCCCATTTCATTCAGATCGACTGTTGATCCTGCTTCACCTGA
GATGGCACTCGGCGTTGTCCAAGGCACTCATTCCAATTCCTTCTCAGAAC
GAGTTCCGGCTGCTCATTCGAACGTAACTTTTTGCGAGAAGCATGTAAGG
AAACTGGTGACGAAGATTTCAGAAGGAAGTGATTTCTCAAACACTAGATA
TTGTGAGCATAGATTGTCTCAGGCGTGCGAAGTTTATAGAGGTTCAGGTT
TCTTAAGATGGCCATATCCATGGGCTGAATACCTGTCCAACTGTTCTGCT
GACGTTAATGAAGAAATGATCTTTGTCTAG
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protein sequence of Ggra1672.t1

>Ggra1672.t1 ID=Ggra1672.t1|Name=Ggra1672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=410bp
MESSFRYILSACVISRRSSELMPEFVIRNYVAGVDHFYVYGDDDDDHEER
MRMHQIFEWLDDVVTYIPHGRGAPADKEDSKSYVQMRMYRHCLQKFGAGS
KWMTFIDTDEFFETHALQQIETRSFDRHRRAFLHDVLSKYDFLPVLCVRW
KSALTNGRILPPRSGEFLHDLFPRTCKLLVGDNGKLSARKTIMQTKYVDL
DQSPKNDEGIHKGFVFRGPGLYTNVTCKAHLGRNLEPPIHIVHYWSRDLS
SFLRKIRRGRPRKGVPTRTLYDLFARERMCEPEESVSSADIRHEHVSALL
RSFPISFRSTVDPASPEMALGVVQGTHSNSFSERVPAAHSNVTFCEKHVR
KLVTKISEGSDFSNTRYCEHRLSQACEVYRGSGFLRWPYPWAEYLSNCSA
DVNEEMIFV*
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mRNA from alignment at tig00000050_pilon:312245..313474+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1672.t1 ID=Ggra1672.t1|Name=Ggra1672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000050_pilon:312245..313474+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTTCATTTCGTTACATTCTGTCGGCGTGTGTCATCAGTCGTCG
ATCAAGTGAACTTATGCCAGAGTTTGTCATTCGAAATTACGTCGCAGGAG
TTGATCACTTCTATGTTTATGGGGACGACGACGATGACCATGAAGAACGA
ATGCGGATGCATCAAATTTTCGAGTGGCTTGACGATGTTGTCACTTATAT
ACCACATGGTAGGGGTGCCCCGGCGGATAAGGAGGATTCTAAGTCGTACG
TACAAATGCGCATGTATCGACATTGCCTGCAAAAGTTTGGTGCTGGATCG
AAATGGATGACCTTCATCGACACCGACGAGTTCTTTGAAACTCATGCCCT
TCAACAAATTGAAACCAGATCTTTTGATCGACATCGTCGTGCTTTCCTGC
ACGACGTTTTGAGCAAGTACGATTTCCTTCCAGTTCTTTGCGTGCGATGG
AAGTCAGCGTTGACGAATGGACGAATTCTTCCGCCACGTTCTGGAGAGTT
CCTCCATGACTTATTTCCTAGAACATGCAAACTTCTTGTTGGAGACAATG
GCAAACTCTCTGCAAGAAAGACAATCATGCAAACCAAATATGTGGATCTA
GATCAAAGTCCAAAGAATGATGAAGGCATTCACAAGGGCTTTGTCTTTCG
AGGACCCGGATTATACACGAATGTGACATGTAAAGCTCATCTGGGAAGGA
ATCTAGAACCACCTATCCACATTGTGCACTATTGGAGTCGAGACCTATCC
AGCTTTCTGCGCAAAATCCGCCGTGGCAGACCGAGAAAAGGAGTACCCAC
GAGAACACTCTATGACTTATTCGCAAGAGAGAGAATGTGCGAACCTGAAG
AGAGTGTAAGTAGCGCTGACATACGCCATGAACATGTTTCCGCTCTCTTA
CGAAGCTTTCCCATTTCATTCAGATCGACTGTTGATCCTGCTTCACCTGA
GATGGCACTCGGCGTTGTCCAAGGCACTCATTCCAATTCCTTCTCAGAAC
GAGTTCCGGCTGCTCATTCGAACGTAACTTTTTGCGAGAAGCATGTAAGG
AAACTGGTGACGAAGATTTCAGAAGGAAGTGATTTCTCAAACACTAGATA
TTGTGAGCATAGATTGTCTCAGGCGTGCGAAGTTTATAGAGGTTCAGGTT
TCTTAAGATGGCCATATCCATGGGCTGAATACCTGTCCAACTGTTCTGCT
GACGTTAATGAAGAAATGATCTTTGTCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:312245..313474+

>Ggra1672.t1 ID=Ggra1672.t1|Name=Ggra1672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000050_pilon:312245..313474+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTTCATTTCGTTACATTCTGTCGGCGTGTGTCATCAGTCGTCG
ATCAAGTGAACTTATGCCAGAGTTTGTCATTCGAAATTACGTCGCAGGAG
TTGATCACTTCTATGTTTATGGGGACGACGACGATGACCATGAAGAACGA
ATGCGGATGCATCAAATTTTCGAGTGGCTTGACGATGTTGTCACTTATAT
ACCACATGGTAGGGGTGCCCCGGCGGATAAGGAGGATTCTAAGTCGTACG
TACAAATGCGCATGTATCGACATTGCCTGCAAAAGTTTGGTGCTGGATCG
AAATGGATGACCTTCATCGACACCGACGAGTTCTTTGAAACTCATGCCCT
TCAACAAATTGAAACCAGATCTTTTGATCGACATCGTCGTGCTTTCCTGC
ACGACGTTTTGAGCAAGTACGATTTCCTTCCAGTTCTTTGCGTGCGATGG
AAGTCAGCGTTGACGAATGGACGAATTCTTCCGCCACGTTCTGGAGAGTT
CCTCCATGACTTATTTCCTAGAACATGCAAACTTCTTGTTGGAGACAATG
GCAAACTCTCTGCAAGAAAGACAATCATGCAAACCAAATATGTGGATCTA
GATCAAAGTCCAAAGAATGATGAAGGCATTCACAAGGGCTTTGTCTTTCG
AGGACCCGGATTATACACGAATGTGACATGTAAAGCTCATCTGGGAAGGA
ATCTAGAACCACCTATCCACATTGTGCACTATTGGAGTCGAGACCTATCC
AGCTTTCTGCGCAAAATCCGCCGTGGCAGACCGAGAAAAGGAGTACCCAC
GAGAACACTCTATGACTTATTCGCAAGAGAGAGAATGTGCGAACCTGAAG
AGAGTGTAAGTAGCGCTGACATACGCCATGAACATGTTTCCGCTCTCTTA
CGAAGCTTTCCCATTTCATTCAGATCGACTGTTGATCCTGCTTCACCTGA
GATGGCACTCGGCGTTGTCCAAGGCACTCATTCCAATTCCTTCTCAGAAC
GAGTTCCGGCTGCTCATTCGAACGTAACTTTTTGCGAGAAGCATGTAAGG
AAACTGGTGACGAAGATTTCAGAAGGAAGTGATTTCTCAAACACTAGATA
TTGTGAGCATAGATTGTCTCAGGCGTGCGAAGTTTATAGAGGTTCAGGTT
TCTTAAGATGGCCATATCCATGGGCTGAATACCTGTCCAACTGTTCTGCT
GACGTTAATGAAGAAATGATCTTTGTCTAG
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