Ggra1671.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1671.t1
Unique NameGgra1671.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:310141..311031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010108191.1
PFAMsCTP_transf_3
Max annot lvl35493|Streptophyta
KEGG rclassRC00152,RC00910
KEGG koko:K00979
KEGG ReactionR03351,R11396
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00063
Evalue2.45e-34
EggNOG OGsCOG1212@1|root,2QPIP@2759|Eukaryota,37J5D@33090|Viridiplantae,3G8J4@35493|Streptophyta,4JM1W@91835|fabids
EC2.7.7.38
Description3-deoxy-manno-octulosonate cytidylyltransferase
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1671Ggra1671Gracilaria gracilis GNS1m malegenetig00000050_pilon 310141..311031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1671.t1.stop1Ggra1671.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 310141..310143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1671.t1.CDS1Ggra1671.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 310141..311031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1671.t1.exon1Ggra1671.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 310141..311031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1671.t1.start1Ggra1671.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 311029..311031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1671.t1Ggra1671.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 310141..311031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1671.t1 ID=Ggra1671.t1|Name=Ggra1671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MTFDTLTPYNVCACIPARYASYRLHGKLLFDIGGQTVLERTCRQALQCKW
ISRVFILTDHERIADAMTAAGFGENVELILNRVTTRNGTERIGKNLHFIP
EQYAIIVNIQGDEPFVDPRNVDYVIEKHIAAHSEGSREKDDIFFSTLHQQ
IADFDYLQETSCVKIIVNRRNNAMLFTRTVVPWNKDGVVQSGTKYFSCTG
LYVYNRERVEQYIALEDTEHQIEEDVEQMKVLEHGFIIKTFECPYYNEIS
LNTIADYHMLRTKYGFPEETGRASPVSSVSGNVSDCQPEEEELQQS*
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spliced messenger RNA

>Ggra1671.t1 ID=Ggra1671.t1|Name=Ggra1671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000050_pilon:310141..311031- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCGATACTCTCACGCCGTACAACGTCTGTGCTTGCATACCAGC
GAGATATGCATCTTATCGTCTGCATGGAAAATTGCTGTTTGACATTGGAG
GACAAACTGTCTTAGAGCGGACATGCCGACAGGCCCTCCAGTGCAAGTGG
ATATCGCGAGTATTCATCCTCACAGACCATGAGCGAATTGCAGACGCAAT
GACCGCGGCTGGATTTGGAGAGAACGTGGAATTGATTCTGAACAGAGTCA
CAACTCGGAACGGCACGGAGAGAATTGGGAAGAATTTGCATTTCATTCCT
GAACAGTATGCAATCATCGTAAACATCCAAGGAGATGAACCTTTCGTTGA
TCCCCGAAACGTCGACTATGTCATAGAAAAGCACATTGCCGCACATTCGG
AAGGAAGTAGAGAGAAGGATGACATATTCTTTTCTACTCTACATCAACAA
ATAGCAGACTTCGACTATCTACAAGAGACGAGCTGCGTGAAAATTATTGT
GAACCGAAGAAATAATGCAATGCTGTTCACAAGGACTGTTGTCCCGTGGA
ATAAAGATGGGGTTGTCCAATCAGGAACAAAGTACTTCTCTTGTACCGGC
TTGTATGTTTATAATCGAGAGAGAGTAGAACAGTATATCGCTCTGGAGGA
CACTGAACATCAAATTGAGGAAGATGTTGAGCAAATGAAAGTCTTGGAAC
ACGGTTTCATCATTAAGACATTTGAATGTCCCTATTACAACGAAATATCT
CTGAACACAATAGCCGACTACCATATGCTAAGAACGAAGTACGGATTCCC
AGAGGAAACAGGACGAGCATCTCCAGTGAGTTCAGTGTCAGGAAACGTCT
CGGACTGCCAACCAGAAGAAGAGGAACTCCAACAGTCTTAA
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protein sequence of Ggra1671.t1

>Ggra1671.t1 ID=Ggra1671.t1|Name=Ggra1671.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MTFDTLTPYNVCACIPARYASYRLHGKLLFDIGGQTVLERTCRQALQCKW
ISRVFILTDHERIADAMTAAGFGENVELILNRVTTRNGTERIGKNLHFIP
EQYAIIVNIQGDEPFVDPRNVDYVIEKHIAAHSEGSREKDDIFFSTLHQQ
IADFDYLQETSCVKIIVNRRNNAMLFTRTVVPWNKDGVVQSGTKYFSCTG
LYVYNRERVEQYIALEDTEHQIEEDVEQMKVLEHGFIIKTFECPYYNEIS
LNTIADYHMLRTKYGFPEETGRASPVSSVSGNVSDCQPEEEELQQS*
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mRNA from alignment at tig00000050_pilon:310141..311031-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1671.t1 ID=Ggra1671.t1|Name=Ggra1671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000050_pilon:310141..311031- (Gracilaria gracilis GNS1m male)
ATGACTTTCGATACTCTCACGCCGTACAACGTCTGTGCTTGCATACCAGC
GAGATATGCATCTTATCGTCTGCATGGAAAATTGCTGTTTGACATTGGAG
GACAAACTGTCTTAGAGCGGACATGCCGACAGGCCCTCCAGTGCAAGTGG
ATATCGCGAGTATTCATCCTCACAGACCATGAGCGAATTGCAGACGCAAT
GACCGCGGCTGGATTTGGAGAGAACGTGGAATTGATTCTGAACAGAGTCA
CAACTCGGAACGGCACGGAGAGAATTGGGAAGAATTTGCATTTCATTCCT
GAACAGTATGCAATCATCGTAAACATCCAAGGAGATGAACCTTTCGTTGA
TCCCCGAAACGTCGACTATGTCATAGAAAAGCACATTGCCGCACATTCGG
AAGGAAGTAGAGAGAAGGATGACATATTCTTTTCTACTCTACATCAACAA
ATAGCAGACTTCGACTATCTACAAGAGACGAGCTGCGTGAAAATTATTGT
GAACCGAAGAAATAATGCAATGCTGTTCACAAGGACTGTTGTCCCGTGGA
ATAAAGATGGGGTTGTCCAATCAGGAACAAAGTACTTCTCTTGTACCGGC
TTGTATGTTTATAATCGAGAGAGAGTAGAACAGTATATCGCTCTGGAGGA
CACTGAACATCAAATTGAGGAAGATGTTGAGCAAATGAAAGTCTTGGAAC
ACGGTTTCATCATTAAGACATTTGAATGTCCCTATTACAACGAAATATCT
CTGAACACAATAGCCGACTACCATATGCTAAGAACGAAGTACGGATTCCC
AGAGGAAACAGGACGAGCATCTCCAGTGAGTTCAGTGTCAGGAAACGTCT
CGGACTGCCAACCAGAAGAAGAGGAACTCCAACAGTCTTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:310141..311031-

>Ggra1671.t1 ID=Ggra1671.t1|Name=Ggra1671.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000050_pilon:310141..311031- (Gracilaria gracilis GNS1m male)
ATGACTTTCGATACTCTCACGCCGTACAACGTCTGTGCTTGCATACCAGC
GAGATATGCATCTTATCGTCTGCATGGAAAATTGCTGTTTGACATTGGAG
GACAAACTGTCTTAGAGCGGACATGCCGACAGGCCCTCCAGTGCAAGTGG
ATATCGCGAGTATTCATCCTCACAGACCATGAGCGAATTGCAGACGCAAT
GACCGCGGCTGGATTTGGAGAGAACGTGGAATTGATTCTGAACAGAGTCA
CAACTCGGAACGGCACGGAGAGAATTGGGAAGAATTTGCATTTCATTCCT
GAACAGTATGCAATCATCGTAAACATCCAAGGAGATGAACCTTTCGTTGA
TCCCCGAAACGTCGACTATGTCATAGAAAAGCACATTGCCGCACATTCGG
AAGGAAGTAGAGAGAAGGATGACATATTCTTTTCTACTCTACATCAACAA
ATAGCAGACTTCGACTATCTACAAGAGACGAGCTGCGTGAAAATTATTGT
GAACCGAAGAAATAATGCAATGCTGTTCACAAGGACTGTTGTCCCGTGGA
ATAAAGATGGGGTTGTCCAATCAGGAACAAAGTACTTCTCTTGTACCGGC
TTGTATGTTTATAATCGAGAGAGAGTAGAACAGTATATCGCTCTGGAGGA
CACTGAACATCAAATTGAGGAAGATGTTGAGCAAATGAAAGTCTTGGAAC
ACGGTTTCATCATTAAGACATTTGAATGTCCCTATTACAACGAAATATCT
CTGAACACAATAGCCGACTACCATATGCTAAGAACGAAGTACGGATTCCC
AGAGGAAACAGGACGAGCATCTCCAGTGAGTTCAGTGTCAGGAAACGTCT
CGGACTGCCAACCAGAAGAAGAGGAACTCCAACAGTCTTAA
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