Ggra1669.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1669.t1
Unique NameGgra1669.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:306043..306547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX54527
Preferred namebola1
PFAMsBolA
Max annot lvl2759|Eukaryota
KEGG koko:K22066
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue2.24e-27
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Descriptionprotein maturation by iron-sulfur cluster transfer
COG categoryT
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1669Ggra1669Gracilaria gracilis GNS1m malegenetig00000050_pilon 306043..306547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1Ggra1669.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 306043..306547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1.stop1Ggra1669.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 306043..306045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1.CDS1Ggra1669.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 306043..306099 -
Ggra1669.t1.CDS2Ggra1669.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 306194..306547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1.exon1Ggra1669.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 306043..306099 -
Ggra1669.t1.exon2Ggra1669.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 306194..306547 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1.intron1Ggra1669.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 306100..306193 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1669.t1.start1Ggra1669.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 306545..306547 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1669.t1 ID=Ggra1669.t1|Name=Ggra1669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MRAAFVPPAFRALRTVYTLPHSGLQRSRPAIVLSCGGPPKGVSIRTKAPA
PGEEDNSITSVQRKITTALNPSRLEVIPTYGDPNGSHVTITVVSDQFQGV
STVKRHRMVYQAIWEELSGPIHAVDKLVTYSPQEDS*
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spliced messenger RNA

>Ggra1669.t1 ID=Ggra1669.t1|Name=Ggra1669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000050_pilon:306043..306547- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGCTGCCTTTGTCCCTCCCGCTTTTCGAGCGCTGCGCACCGTATA
TACGTTACCACATTCCGGGTTGCAACGATCTCGTCCGGCTATCGTGCTCA
GCTGCGGCGGGCCACCGAAAGGTGTTTCCATTCGCACCAAAGCGCCTGCA
CCAGGCGAAGAGGATAATTCAATCACTTCTGTACAGCGAAAGATCACTAC
CGCCTTAAACCCGTCTCGACTAGAAGTCATTCCTACTTACGGTGATCCTA
ATGGTTCGCATGTTACGATCACAGTCGTGAGTGACCAATTTCAGGGCGTC
TCGACTGTCAAAAGACATCGAATGGTTTACCAAGCTATCTGGGAAGAGCT
CTCTGGTCCCATCCATGCGGTAGACAAGCTTGTTACCTACTCTCCTCAGG
AAGACTCATAG
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protein sequence of Ggra1669.t1

>Ggra1669.t1 ID=Ggra1669.t1|Name=Ggra1669.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MRAAFVPPAFRALRTVYTLPHSGLQRSRPAIVLSCGGPPKGVSIRTKAPA
PGEEDNSITSVQRKITTALNPSRLEVIPTYGDPNGSHVTITVVSDQFQGV
STVKRHRMVYQAIWEELSGPIHAVDKLVTYSPQEDS*
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mRNA from alignment at tig00000050_pilon:306043..306547-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1669.t1 ID=Ggra1669.t1|Name=Ggra1669.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp|location=Sequence derived from alignment at tig00000050_pilon:306043..306547- (Gracilaria gracilis GNS1m male)
ATGCGAGCTGCCTTTGTCCCTCCCGCTTTTCGAGCGCTGCGCACCGTATA
TACGTTACCACATTCCGGGTTGCAACGATCTCGTCCGGCTATCGTGCTCA
GCTGCGGCGGGCCACCGAAAGGTGTTTCCATTCGCACCAAAGCGCCTGCA
CCAGGCGAAGAGGATAATTCAATCACTTCTGTACAGCGAAAGATCACTAC
CGCCTTAAACCCGTCTCGACTAGAAGTCATTCCTACTTACGGTGATCCTA
ATGGTTCGCATGTTACGATCACAGTCGTGAGTGACCAATTTCAGGGCGTC
TCGACTGTCAAAAGACATCGAATGGTTTACCAAGCTATCTGGGAAGAGCT
CTCTGTACGTTCACTGTTCATCCCATCGCGACTTACTTCGTTTCCCCGCC
TCTTTTGCTGACATCGCCAAACTGCCTTGCGTGCCTGACTCTGCGTAGGG
TCCCATCCATGCGGTAGACAAGCTTGTTACCTACTCTCCTCAGGAAGACT
CATAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:306043..306547-

>Ggra1669.t1 ID=Ggra1669.t1|Name=Ggra1669.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000050_pilon:306043..306547- (Gracilaria gracilis GNS1m male)
ATGCGAGCTGCCTTTGTCCCTCCCGCTTTTCGAGCGCTGCGCACCGTATA
TACGTTACCACATTCCGGGTTGCAACGATCTCGTCCGGCTATCGTGCTCA
GCTGCGGCGGGCCACCGAAAGGTGTTTCCATTCGCACCAAAGCGCCTGCA
CCAGGCGAAGAGGATAATTCAATCACTTCTGTACAGCGAAAGATCACTAC
CGCCTTAAACCCGTCTCGACTAGAAGTCATTCCTACTTACGGTGATCCTA
ATGGTTCGCATGTTACGATCACAGTCGTGAGTGACCAATTTCAGGGCGTC
TCGACTGTCAAAAGACATCGAATGGTTTACCAAGCTATCTGGGAAGAGCT
CTCTGGTCCCATCCATGCGGTAGACAAGCTTGTTACCTACTCTCCTCAGG
AAGACTCATAG
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