Ggra1668.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1668.t1
Unique NameGgra1668.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:300888..301691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010101411.1
PFAMsStk19
Max annot lvl35493|Streptophyta
KEGG koko:K08880
Evalue1.29e-21
EggNOG OGs296WV@1|root,2RDW5@2759|Eukaryota,37PTA@33090|Viridiplantae,3GGQR@35493|Streptophyta,4JDNR@91835|fabids
EC2.7.11.1
DescriptionSerine-threonine protein kinase 19
COG categoryS
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1668Ggra1668Gracilaria gracilis GNS1m malegenetig00000050_pilon 300888..301691 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1668.t1.stop1Ggra1668.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 300888..300890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1668.t1.CDS1Ggra1668.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 300888..301691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1668.t1.exon1Ggra1668.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 300888..301691 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1668.t1.start1Ggra1668.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 301689..301691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1668.t1Ggra1668.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 300888..301691 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1668.t1 ID=Ggra1668.t1|Name=Ggra1668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MNPSNTLNPLPPNLKPRRTTRRRPLSQRRPQKERPKPSQNDESQILTTIS
SIPDTHVALRVLRQDWSEAANQDLPNTPPLVLKTQLCALVANRTEVYREL
DDICLHGLRRIVLPDGGECFILPEDFRARAPNTNSPIMEKFFDNVFEQNH
LPWVTISALRRVYSEETDDAVNQLVRNGYLTSQDEHSYNFAFPGMGAFMR
NRTSGQKEITRILRRAPYKEMGLTKLELRTLKNTCFTARWHVRDVVGSGK
AECVDTSVGVLVRLRVF*
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spliced messenger RNA

>Ggra1668.t1 ID=Ggra1668.t1|Name=Ggra1668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:300888..301691- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGTCTAATACACTTAACCCCTTACCTCCAAATCTGAAGCCGCG
GCGAACAACTCGTCGTCGCCCCCTATCGCAACGCCGTCCTCAGAAAGAGA
GGCCGAAGCCGTCACAGAATGATGAGAGCCAGATCTTAACCACAATTTCA
TCCATTCCAGACACTCATGTTGCATTGCGTGTCTTGCGACAGGATTGGTC
AGAAGCTGCGAATCAAGACCTTCCCAACACGCCACCACTGGTGCTAAAAA
CCCAACTTTGCGCCCTTGTGGCAAACAGAACTGAAGTGTATCGTGAATTG
GACGATATTTGTCTCCACGGCTTGCGCCGAATTGTTCTTCCCGATGGCGG
CGAATGCTTCATCTTACCGGAAGATTTTCGCGCGAGGGCACCCAACACCA
ACTCGCCAATTATGGAGAAATTCTTCGACAACGTCTTTGAACAAAATCAC
TTGCCTTGGGTCACAATTTCGGCCTTGCGAAGAGTTTATAGCGAGGAAAC
AGATGATGCTGTGAATCAGCTTGTTCGAAACGGGTATCTAACATCTCAAG
ATGAGCATTCTTACAATTTCGCCTTTCCAGGAATGGGAGCCTTTATGAGA
AACCGAACTTCAGGTCAGAAGGAAATCACAAGAATACTTCGGAGGGCTCC
ATACAAGGAAATGGGCCTCACAAAACTAGAATTGCGCACGTTGAAGAACA
CTTGTTTCACAGCGAGATGGCACGTGCGTGATGTGGTTGGATCAGGAAAA
GCGGAATGTGTTGATACATCTGTGGGAGTGCTCGTGCGTTTGCGAGTGTT
TTAA
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protein sequence of Ggra1668.t1

>Ggra1668.t1 ID=Ggra1668.t1|Name=Ggra1668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MNPSNTLNPLPPNLKPRRTTRRRPLSQRRPQKERPKPSQNDESQILTTIS
SIPDTHVALRVLRQDWSEAANQDLPNTPPLVLKTQLCALVANRTEVYREL
DDICLHGLRRIVLPDGGECFILPEDFRARAPNTNSPIMEKFFDNVFEQNH
LPWVTISALRRVYSEETDDAVNQLVRNGYLTSQDEHSYNFAFPGMGAFMR
NRTSGQKEITRILRRAPYKEMGLTKLELRTLKNTCFTARWHVRDVVGSGK
AECVDTSVGVLVRLRVF*
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mRNA from alignment at tig00000050_pilon:300888..301691-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1668.t1 ID=Ggra1668.t1|Name=Ggra1668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:300888..301691- (Gracilaria gracilis GNS1m male)
ATGAATCCGTCTAATACACTTAACCCCTTACCTCCAAATCTGAAGCCGCG
GCGAACAACTCGTCGTCGCCCCCTATCGCAACGCCGTCCTCAGAAAGAGA
GGCCGAAGCCGTCACAGAATGATGAGAGCCAGATCTTAACCACAATTTCA
TCCATTCCAGACACTCATGTTGCATTGCGTGTCTTGCGACAGGATTGGTC
AGAAGCTGCGAATCAAGACCTTCCCAACACGCCACCACTGGTGCTAAAAA
CCCAACTTTGCGCCCTTGTGGCAAACAGAACTGAAGTGTATCGTGAATTG
GACGATATTTGTCTCCACGGCTTGCGCCGAATTGTTCTTCCCGATGGCGG
CGAATGCTTCATCTTACCGGAAGATTTTCGCGCGAGGGCACCCAACACCA
ACTCGCCAATTATGGAGAAATTCTTCGACAACGTCTTTGAACAAAATCAC
TTGCCTTGGGTCACAATTTCGGCCTTGCGAAGAGTTTATAGCGAGGAAAC
AGATGATGCTGTGAATCAGCTTGTTCGAAACGGGTATCTAACATCTCAAG
ATGAGCATTCTTACAATTTCGCCTTTCCAGGAATGGGAGCCTTTATGAGA
AACCGAACTTCAGGTCAGAAGGAAATCACAAGAATACTTCGGAGGGCTCC
ATACAAGGAAATGGGCCTCACAAAACTAGAATTGCGCACGTTGAAGAACA
CTTGTTTCACAGCGAGATGGCACGTGCGTGATGTGGTTGGATCAGGAAAA
GCGGAATGTGTTGATACATCTGTGGGAGTGCTCGTGCGTTTGCGAGTGTT
TTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:300888..301691-

>Ggra1668.t1 ID=Ggra1668.t1|Name=Ggra1668.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000050_pilon:300888..301691- (Gracilaria gracilis GNS1m male)
ATGAATCCGTCTAATACACTTAACCCCTTACCTCCAAATCTGAAGCCGCG
GCGAACAACTCGTCGTCGCCCCCTATCGCAACGCCGTCCTCAGAAAGAGA
GGCCGAAGCCGTCACAGAATGATGAGAGCCAGATCTTAACCACAATTTCA
TCCATTCCAGACACTCATGTTGCATTGCGTGTCTTGCGACAGGATTGGTC
AGAAGCTGCGAATCAAGACCTTCCCAACACGCCACCACTGGTGCTAAAAA
CCCAACTTTGCGCCCTTGTGGCAAACAGAACTGAAGTGTATCGTGAATTG
GACGATATTTGTCTCCACGGCTTGCGCCGAATTGTTCTTCCCGATGGCGG
CGAATGCTTCATCTTACCGGAAGATTTTCGCGCGAGGGCACCCAACACCA
ACTCGCCAATTATGGAGAAATTCTTCGACAACGTCTTTGAACAAAATCAC
TTGCCTTGGGTCACAATTTCGGCCTTGCGAAGAGTTTATAGCGAGGAAAC
AGATGATGCTGTGAATCAGCTTGTTCGAAACGGGTATCTAACATCTCAAG
ATGAGCATTCTTACAATTTCGCCTTTCCAGGAATGGGAGCCTTTATGAGA
AACCGAACTTCAGGTCAGAAGGAAATCACAAGAATACTTCGGAGGGCTCC
ATACAAGGAAATGGGCCTCACAAAACTAGAATTGCGCACGTTGAAGAACA
CTTGTTTCACAGCGAGATGGCACGTGCGTGATGTGGTTGGATCAGGAAAA
GCGGAATGTGTTGATACATCTGTGGGAGTGCTCGTGCGTTTGCGAGTGTT
TTAA
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