Ggra1667.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1667.t1
Unique NameGgra1667.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:299732..300841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T010839
PFAMsCMS1
Max annot lvl121069|Pythiales
Evalue2.87e-10
EggNOG OGsKOG3089@1|root,KOG3089@2759|Eukaryota,1MBEM@121069|Pythiales
DescriptionUbiquitin-specific protease. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1667Ggra1667Gracilaria gracilis GNS1m malegenetig00000050_pilon 299732..300841 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1667.t1.start1Ggra1667.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 299732..299734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1667.t1.CDS1Ggra1667.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 299732..300841 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1667.t1.exon1Ggra1667.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 299732..300841 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1667.t1.stop1Ggra1667.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 300839..300841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1667.t1Ggra1667.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 299732..300841 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1667.t1 ID=Ggra1667.t1|Name=Ggra1667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp
MGRTKVSKPGGRRRKRMREESHASHVGAEKDAQLTKSTPEESPPLKKTAR
LSPAKQTHVDAVHAFVEDEHAKLRKDLKRARRQINREKAARKQRREAGEQ
EEQTTDKVPSDEPEGENNTSTSVKNARKLERRSQRAFHDMQRARADDMIR
TSPHQFLWSEYVKWAEENKVTIDDQHQWTPDQVNATNEDGQESLMPHVKK
LIGPNYLRETTFKKSKKATPAVAVIMLAPSAIRAVRVAKRLYDGQPVGKL
FGKHISAEAQQQWLRRACRKTIVPTAAGTAKRVHRLVEDGHMTLEHTNLI
VIDFSRDARLRNVLDFSLARSELFRFLHDFVCTRVANGMKLMLTIPKNQP
VRLEDVKPEEEKTRAAEDN*
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spliced messenger RNA

>Ggra1667.t1 ID=Ggra1667.t1|Name=Ggra1667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000050_pilon:299732..300841+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGAACGAAGGTGAGCAAGCCAGGCGGCCGCAGGCGCAAGCGCAT
GCGCGAAGAGTCCCACGCCTCACACGTCGGCGCAGAGAAGGACGCACAGC
TCACCAAATCAACTCCGGAAGAGTCTCCACCGCTGAAGAAGACTGCACGC
TTGAGCCCTGCCAAACAGACCCACGTCGATGCAGTCCATGCATTTGTTGA
GGACGAACATGCCAAGCTCCGCAAGGATTTGAAACGGGCTCGGAGGCAGA
TCAATCGCGAGAAAGCAGCTCGCAAGCAGAGGAGGGAGGCGGGAGAACAA
GAAGAACAGACTACTGATAAAGTGCCAAGTGACGAACCTGAAGGTGAGAA
TAACACTTCAACCTCGGTGAAGAACGCTCGGAAGCTTGAACGTCGCTCGC
AGCGAGCGTTCCATGACATGCAACGTGCGCGTGCAGATGATATGATTCGC
ACATCACCGCATCAGTTTTTATGGTCTGAGTATGTGAAATGGGCTGAGGA
GAACAAAGTAACTATCGATGACCAACACCAATGGACTCCCGATCAGGTTA
ACGCCACTAATGAAGACGGTCAAGAGTCACTCATGCCCCACGTGAAGAAA
CTAATCGGTCCAAACTACCTCCGGGAGACAACCTTTAAGAAATCTAAGAA
AGCAACGCCGGCTGTAGCGGTTATTATGCTGGCTCCTAGTGCTATACGTG
CCGTTCGGGTAGCCAAGCGATTATACGATGGACAGCCAGTGGGCAAGCTC
TTTGGGAAGCATATATCTGCTGAAGCGCAGCAGCAATGGCTGCGTAGGGC
ATGCAGAAAAACGATAGTACCAACTGCTGCGGGAACTGCAAAGCGCGTCC
ACAGACTAGTTGAAGATGGCCATATGACTCTAGAACATACAAACTTAATT
GTGATTGACTTCTCGAGGGATGCAAGACTGAGAAACGTGCTAGACTTTTC
CTTGGCGCGCAGTGAGTTATTCCGGTTTTTGCATGACTTTGTATGCACCC
GAGTTGCAAATGGTATGAAGTTGATGCTCACAATTCCCAAAAACCAGCCG
GTTCGCTTAGAAGATGTGAAGCCTGAAGAGGAAAAGACCAGGGCAGCTGA
GGATAACTAA
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protein sequence of Ggra1667.t1

>Ggra1667.t1 ID=Ggra1667.t1|Name=Ggra1667.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=370bp
MGRTKVSKPGGRRRKRMREESHASHVGAEKDAQLTKSTPEESPPLKKTAR
LSPAKQTHVDAVHAFVEDEHAKLRKDLKRARRQINREKAARKQRREAGEQ
EEQTTDKVPSDEPEGENNTSTSVKNARKLERRSQRAFHDMQRARADDMIR
TSPHQFLWSEYVKWAEENKVTIDDQHQWTPDQVNATNEDGQESLMPHVKK
LIGPNYLRETTFKKSKKATPAVAVIMLAPSAIRAVRVAKRLYDGQPVGKL
FGKHISAEAQQQWLRRACRKTIVPTAAGTAKRVHRLVEDGHMTLEHTNLI
VIDFSRDARLRNVLDFSLARSELFRFLHDFVCTRVANGMKLMLTIPKNQP
VRLEDVKPEEEKTRAAEDN*
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mRNA from alignment at tig00000050_pilon:299732..300841+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1667.t1 ID=Ggra1667.t1|Name=Ggra1667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000050_pilon:299732..300841+ (Gracilaria gracilis GNS1m male)
ATGGGCAGAACGAAGGTGAGCAAGCCAGGCGGCCGCAGGCGCAAGCGCAT
GCGCGAAGAGTCCCACGCCTCACACGTCGGCGCAGAGAAGGACGCACAGC
TCACCAAATCAACTCCGGAAGAGTCTCCACCGCTGAAGAAGACTGCACGC
TTGAGCCCTGCCAAACAGACCCACGTCGATGCAGTCCATGCATTTGTTGA
GGACGAACATGCCAAGCTCCGCAAGGATTTGAAACGGGCTCGGAGGCAGA
TCAATCGCGAGAAAGCAGCTCGCAAGCAGAGGAGGGAGGCGGGAGAACAA
GAAGAACAGACTACTGATAAAGTGCCAAGTGACGAACCTGAAGGTGAGAA
TAACACTTCAACCTCGGTGAAGAACGCTCGGAAGCTTGAACGTCGCTCGC
AGCGAGCGTTCCATGACATGCAACGTGCGCGTGCAGATGATATGATTCGC
ACATCACCGCATCAGTTTTTATGGTCTGAGTATGTGAAATGGGCTGAGGA
GAACAAAGTAACTATCGATGACCAACACCAATGGACTCCCGATCAGGTTA
ACGCCACTAATGAAGACGGTCAAGAGTCACTCATGCCCCACGTGAAGAAA
CTAATCGGTCCAAACTACCTCCGGGAGACAACCTTTAAGAAATCTAAGAA
AGCAACGCCGGCTGTAGCGGTTATTATGCTGGCTCCTAGTGCTATACGTG
CCGTTCGGGTAGCCAAGCGATTATACGATGGACAGCCAGTGGGCAAGCTC
TTTGGGAAGCATATATCTGCTGAAGCGCAGCAGCAATGGCTGCGTAGGGC
ATGCAGAAAAACGATAGTACCAACTGCTGCGGGAACTGCAAAGCGCGTCC
ACAGACTAGTTGAAGATGGCCATATGACTCTAGAACATACAAACTTAATT
GTGATTGACTTCTCGAGGGATGCAAGACTGAGAAACGTGCTAGACTTTTC
CTTGGCGCGCAGTGAGTTATTCCGGTTTTTGCATGACTTTGTATGCACCC
GAGTTGCAAATGGTATGAAGTTGATGCTCACAATTCCCAAAAACCAGCCG
GTTCGCTTAGAAGATGTGAAGCCTGAAGAGGAAAAGACCAGGGCAGCTGA
GGATAACTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:299732..300841+

>Ggra1667.t1 ID=Ggra1667.t1|Name=Ggra1667.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000050_pilon:299732..300841+ (Gracilaria gracilis GNS1m male)
ATGGGCAGAACGAAGGTGAGCAAGCCAGGCGGCCGCAGGCGCAAGCGCAT
GCGCGAAGAGTCCCACGCCTCACACGTCGGCGCAGAGAAGGACGCACAGC
TCACCAAATCAACTCCGGAAGAGTCTCCACCGCTGAAGAAGACTGCACGC
TTGAGCCCTGCCAAACAGACCCACGTCGATGCAGTCCATGCATTTGTTGA
GGACGAACATGCCAAGCTCCGCAAGGATTTGAAACGGGCTCGGAGGCAGA
TCAATCGCGAGAAAGCAGCTCGCAAGCAGAGGAGGGAGGCGGGAGAACAA
GAAGAACAGACTACTGATAAAGTGCCAAGTGACGAACCTGAAGGTGAGAA
TAACACTTCAACCTCGGTGAAGAACGCTCGGAAGCTTGAACGTCGCTCGC
AGCGAGCGTTCCATGACATGCAACGTGCGCGTGCAGATGATATGATTCGC
ACATCACCGCATCAGTTTTTATGGTCTGAGTATGTGAAATGGGCTGAGGA
GAACAAAGTAACTATCGATGACCAACACCAATGGACTCCCGATCAGGTTA
ACGCCACTAATGAAGACGGTCAAGAGTCACTCATGCCCCACGTGAAGAAA
CTAATCGGTCCAAACTACCTCCGGGAGACAACCTTTAAGAAATCTAAGAA
AGCAACGCCGGCTGTAGCGGTTATTATGCTGGCTCCTAGTGCTATACGTG
CCGTTCGGGTAGCCAAGCGATTATACGATGGACAGCCAGTGGGCAAGCTC
TTTGGGAAGCATATATCTGCTGAAGCGCAGCAGCAATGGCTGCGTAGGGC
ATGCAGAAAAACGATAGTACCAACTGCTGCGGGAACTGCAAAGCGCGTCC
ACAGACTAGTTGAAGATGGCCATATGACTCTAGAACATACAAACTTAATT
GTGATTGACTTCTCGAGGGATGCAAGACTGAGAAACGTGCTAGACTTTTC
CTTGGCGCGCAGTGAGTTATTCCGGTTTTTGCATGACTTTGTATGCACCC
GAGTTGCAAATGGTATGAAGTTGATGCTCACAATTCCCAAAAACCAGCCG
GTTCGCTTAGAAGATGTGAAGCCTGAAGAGGAAAAGACCAGGGCAGCTGA
GGATAACTAA
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