Ggra1665.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1665.t1
Unique NameGgra1665.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:293585..294724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705912.1
Preferred nameATP6V1C2
PFAMsV-ATPase_C
Max annot lvl2759|Eukaryota
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0000902,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009507,GO:0009536,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009826,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030177,GO:0030641,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0040007,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045177,GO:0045184,GO:0045851,GO:0046961,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060560,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Evalue1.01e-82
EggNOG OGsCOG5127@1|root,KOG2909@2759|Eukaryota
Descriptionproton-exporting ATPase activity, phosphorylative mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1665Ggra1665Gracilaria gracilis GNS1m malegenetig00000050_pilon 293585..294724 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1665.t1.stop1Ggra1665.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 293585..293587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1665.t1.CDS1Ggra1665.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 293585..294724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1665.t1.exon1Ggra1665.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 293585..294724 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1665.t1.start1Ggra1665.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 294722..294724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1665.t1Ggra1665.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 293585..294724 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1665.t1 ID=Ggra1665.t1|Name=Ggra1665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MSIRLWVVSAPNSEERSAFDAMKDSLQSKAALCDAYLLQLPQFRVGTLDS
LIAVADAISRDDKTLEATVDRVLRQYRDLVRSSSAVPLVDGIDILEYVTE
FEWDEAKFTPHDSLSEIRSTVMEQVMRLEDEMKIRLSDYTTTRQALTSIE
RRSQGNLMTRALSTIVEANHVVETEHLTTVFVVFPSYNETEFLGCYEDLA
KYVVPRSAKVVASDQEYILYGVTVFKKHVDDFKTAARERRYTVRDFKFDP
NAKTKSAAEEERLKEDAQEQLSTFTKWAETAFAETFIAMVHLKALRSFAE
SVLRYGLPVNFEVALLSPKGKSESRLRQELAKMFAHLGGSWAAISESDEV
TNIPGIIADRDFYPYVYFELPLPIGTSSS*
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spliced messenger RNA

>Ggra1665.t1 ID=Ggra1665.t1|Name=Ggra1665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:293585..294724- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATTCGCCTGTGGGTCGTCTCCGCCCCAAACAGCGAGGAGCGCTC
TGCCTTCGACGCCATGAAGGACTCGCTTCAAAGCAAAGCCGCTCTCTGCG
ATGCATACCTTCTTCAACTGCCTCAGTTCCGCGTTGGGACTCTCGATTCG
CTCATCGCAGTTGCAGATGCTATTTCAAGAGATGACAAAACCCTAGAAGC
AACGGTTGACCGCGTCCTACGCCAATATCGCGACCTTGTGCGCTCCTCCT
CCGCTGTGCCGCTTGTGGATGGCATCGATATCCTCGAGTACGTCACAGAA
TTTGAATGGGACGAAGCTAAGTTTACCCCCCATGATTCTCTGTCGGAGAT
TAGATCCACCGTTATGGAGCAAGTCATGCGTCTTGAGGACGAGATGAAGA
TTAGACTTAGCGACTACACTACTACCCGTCAGGCGCTGACCTCTATTGAG
CGCCGATCTCAAGGAAATCTCATGACACGCGCCCTGTCTACTATAGTGGA
AGCCAACCACGTCGTCGAAACCGAACACTTGACCACTGTGTTCGTCGTGT
TCCCGTCGTACAACGAAACCGAGTTCCTCGGCTGTTACGAGGATTTGGCC
AAATATGTCGTTCCACGCTCAGCCAAAGTCGTTGCTTCTGATCAGGAGTA
CATTCTCTACGGTGTTACTGTCTTCAAGAAGCATGTTGACGATTTCAAGA
CTGCTGCGAGGGAACGGAGGTACACCGTCCGCGACTTCAAGTTCGATCCA
AATGCAAAGACCAAGTCAGCTGCGGAGGAGGAACGTCTCAAAGAAGATGC
TCAAGAGCAGCTCTCTACTTTCACCAAGTGGGCGGAAACCGCTTTTGCCG
AAACCTTCATTGCCATGGTTCATCTTAAGGCACTGCGCTCCTTCGCTGAG
AGCGTGCTGCGTTACGGTCTCCCTGTCAATTTTGAAGTGGCACTACTTTC
TCCGAAGGGCAAGTCTGAAAGTCGTTTGCGTCAAGAACTCGCCAAGATGT
TTGCTCATTTGGGTGGCTCATGGGCTGCTATTTCTGAGTCAGATGAAGTA
ACTAACATTCCGGGCATAATCGCCGATAGAGACTTTTATCCATATGTCTA
TTTTGAGTTGCCGCTTCCGATCGGCACCAGCTCCTCTTGA
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protein sequence of Ggra1665.t1

>Ggra1665.t1 ID=Ggra1665.t1|Name=Ggra1665.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MSIRLWVVSAPNSEERSAFDAMKDSLQSKAALCDAYLLQLPQFRVGTLDS
LIAVADAISRDDKTLEATVDRVLRQYRDLVRSSSAVPLVDGIDILEYVTE
FEWDEAKFTPHDSLSEIRSTVMEQVMRLEDEMKIRLSDYTTTRQALTSIE
RRSQGNLMTRALSTIVEANHVVETEHLTTVFVVFPSYNETEFLGCYEDLA
KYVVPRSAKVVASDQEYILYGVTVFKKHVDDFKTAARERRYTVRDFKFDP
NAKTKSAAEEERLKEDAQEQLSTFTKWAETAFAETFIAMVHLKALRSFAE
SVLRYGLPVNFEVALLSPKGKSESRLRQELAKMFAHLGGSWAAISESDEV
TNIPGIIADRDFYPYVYFELPLPIGTSSS*
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mRNA from alignment at tig00000050_pilon:293585..294724-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1665.t1 ID=Ggra1665.t1|Name=Ggra1665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:293585..294724- (Gracilaria gracilis GNS1m male)
ATGTCCATTCGCCTGTGGGTCGTCTCCGCCCCAAACAGCGAGGAGCGCTC
TGCCTTCGACGCCATGAAGGACTCGCTTCAAAGCAAAGCCGCTCTCTGCG
ATGCATACCTTCTTCAACTGCCTCAGTTCCGCGTTGGGACTCTCGATTCG
CTCATCGCAGTTGCAGATGCTATTTCAAGAGATGACAAAACCCTAGAAGC
AACGGTTGACCGCGTCCTACGCCAATATCGCGACCTTGTGCGCTCCTCCT
CCGCTGTGCCGCTTGTGGATGGCATCGATATCCTCGAGTACGTCACAGAA
TTTGAATGGGACGAAGCTAAGTTTACCCCCCATGATTCTCTGTCGGAGAT
TAGATCCACCGTTATGGAGCAAGTCATGCGTCTTGAGGACGAGATGAAGA
TTAGACTTAGCGACTACACTACTACCCGTCAGGCGCTGACCTCTATTGAG
CGCCGATCTCAAGGAAATCTCATGACACGCGCCCTGTCTACTATAGTGGA
AGCCAACCACGTCGTCGAAACCGAACACTTGACCACTGTGTTCGTCGTGT
TCCCGTCGTACAACGAAACCGAGTTCCTCGGCTGTTACGAGGATTTGGCC
AAATATGTCGTTCCACGCTCAGCCAAAGTCGTTGCTTCTGATCAGGAGTA
CATTCTCTACGGTGTTACTGTCTTCAAGAAGCATGTTGACGATTTCAAGA
CTGCTGCGAGGGAACGGAGGTACACCGTCCGCGACTTCAAGTTCGATCCA
AATGCAAAGACCAAGTCAGCTGCGGAGGAGGAACGTCTCAAAGAAGATGC
TCAAGAGCAGCTCTCTACTTTCACCAAGTGGGCGGAAACCGCTTTTGCCG
AAACCTTCATTGCCATGGTTCATCTTAAGGCACTGCGCTCCTTCGCTGAG
AGCGTGCTGCGTTACGGTCTCCCTGTCAATTTTGAAGTGGCACTACTTTC
TCCGAAGGGCAAGTCTGAAAGTCGTTTGCGTCAAGAACTCGCCAAGATGT
TTGCTCATTTGGGTGGCTCATGGGCTGCTATTTCTGAGTCAGATGAAGTA
ACTAACATTCCGGGCATAATCGCCGATAGAGACTTTTATCCATATGTCTA
TTTTGAGTTGCCGCTTCCGATCGGCACCAGCTCCTCTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:293585..294724-

>Ggra1665.t1 ID=Ggra1665.t1|Name=Ggra1665.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000050_pilon:293585..294724- (Gracilaria gracilis GNS1m male)
ATGTCCATTCGCCTGTGGGTCGTCTCCGCCCCAAACAGCGAGGAGCGCTC
TGCCTTCGACGCCATGAAGGACTCGCTTCAAAGCAAAGCCGCTCTCTGCG
ATGCATACCTTCTTCAACTGCCTCAGTTCCGCGTTGGGACTCTCGATTCG
CTCATCGCAGTTGCAGATGCTATTTCAAGAGATGACAAAACCCTAGAAGC
AACGGTTGACCGCGTCCTACGCCAATATCGCGACCTTGTGCGCTCCTCCT
CCGCTGTGCCGCTTGTGGATGGCATCGATATCCTCGAGTACGTCACAGAA
TTTGAATGGGACGAAGCTAAGTTTACCCCCCATGATTCTCTGTCGGAGAT
TAGATCCACCGTTATGGAGCAAGTCATGCGTCTTGAGGACGAGATGAAGA
TTAGACTTAGCGACTACACTACTACCCGTCAGGCGCTGACCTCTATTGAG
CGCCGATCTCAAGGAAATCTCATGACACGCGCCCTGTCTACTATAGTGGA
AGCCAACCACGTCGTCGAAACCGAACACTTGACCACTGTGTTCGTCGTGT
TCCCGTCGTACAACGAAACCGAGTTCCTCGGCTGTTACGAGGATTTGGCC
AAATATGTCGTTCCACGCTCAGCCAAAGTCGTTGCTTCTGATCAGGAGTA
CATTCTCTACGGTGTTACTGTCTTCAAGAAGCATGTTGACGATTTCAAGA
CTGCTGCGAGGGAACGGAGGTACACCGTCCGCGACTTCAAGTTCGATCCA
AATGCAAAGACCAAGTCAGCTGCGGAGGAGGAACGTCTCAAAGAAGATGC
TCAAGAGCAGCTCTCTACTTTCACCAAGTGGGCGGAAACCGCTTTTGCCG
AAACCTTCATTGCCATGGTTCATCTTAAGGCACTGCGCTCCTTCGCTGAG
AGCGTGCTGCGTTACGGTCTCCCTGTCAATTTTGAAGTGGCACTACTTTC
TCCGAAGGGCAAGTCTGAAAGTCGTTTGCGTCAAGAACTCGCCAAGATGT
TTGCTCATTTGGGTGGCTCATGGGCTGCTATTTCTGAGTCAGATGAAGTA
ACTAACATTCCGGGCATAATCGCCGATAGAGACTTTTATCCATATGTCTA
TTTTGAGTTGCCGCTTCCGATCGGCACCAGCTCCTCTTGA
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