Ggra1664.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1664.t1
Unique Name	Ggra1664.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	661

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:291266..293248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705717.1
PFAMs	GHMP_kinases_C,GHMP_kinases_N,NTP_transferase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078
KEGG ko	ko:K16190
KEGG Reaction	R01476
KEGG Pathway	ko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG Module	M00014
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006066,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009856,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019751,GO:0022414,GO:0032501,GO:0032502,GO:0042546,GO:0044085,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0047940,GO:0048856,GO:0048868,GO:0051704,GO:0071554,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901615
Evalue	4.4e-84
EggNOG OGs	2CMBX@1\|root,2QPXH@2759\|Eukaryota
EC	2.7.1.43
Description	glucuronokinase activity
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1664	Ggra1664	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 291266..293248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1664.t1.start1	Ggra1664.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 291266..291268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1664.t1.CDS1	Ggra1664.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 291266..293248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1664.t1.exon1	Ggra1664.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 291266..293248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1664.t1.stop1	Ggra1664.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 293246..293248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1664.t1	Ggra1664.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 291266..293248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:291266..293248+
coding sequence from alignment at tig00000050_pilon:291266..293248+

mRNA sequence

>Ggra1664.t1 ID=Ggra1664.t1|Name=Ggra1664.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp
MTPIKRPSIPTEHFGVVLLAAGYGTRLAADIANDRQFSSMASIPKPLLPV
GGEPILTHWLRTVSTLPAISSIVVVSNAAHYSLYCMWAEHIRGTFCDSAS
MPLTVVSDGTGSNETRLGAVSAINTGLNHVAKKGAQRALIIAGDCLFPNV
SIMSHVEDFCKSDQHAAAFAYHLEDISESHKRGMFWVEELRDGTTIAKQL
IEKPKDTSKLTSDLASAPVYMLEKQSFDSVPKFLEQHKDQSLDKRDAPGL
WLSWLISQTSVRIYTVEHRLDVGNLMQYKDALWTFTIPSQSHTASKLRDR
LSYEPAVGRAYPRVGILGNPSDGFEGKVISASIVSEGYAEVVATTNDKFV
ITPNPKHEFFIEFDGLPHMIQRADDYGLSYSAQPLVGAACIMFAKMYQKY
KSEGDDASSLSSLPNCQLTYSSTIPTKIGLSGSSAFLLATFRALARFYNT
SLEGICPDMKVWADVMRNAEVELLGIAGGRQDPIMALTQGIVLMDFTDGG
LGNCERLDEKLFPDLWICYHQSPGESSGKVHSDLRARYAKGDQTISAVVK
KLIELVDDGKKVLETGELCRLPELFNRNFELRTELVGDVAIGEANKKLTC
VAKEAGFAAKMTGSGGCALCIPNPVRTLSKDDVLKAKTIFERHNLVFRKV
QILESRPWMT*

spliced messenger RNA

>Ggra1664.t1 ID=Ggra1664.t1|Name=Ggra1664.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000050_pilon:291266..293248+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCGATCAAACGCCCCTCTATTCCCACTGAGCATTTTGGTGTTGT
TCTACTTGCCGCCGGTTATGGAACACGCCTAGCCGCCGATATTGCTAACG
ATCGCCAGTTCTCGTCGATGGCCTCGATTCCCAAACCTCTCTTGCCGGTT
GGAGGTGAACCAATTCTTACACACTGGCTGCGCACTGTTTCTACTTTGCC
TGCTATTTCTAGCATTGTCGTTGTCTCCAATGCTGCCCATTATTCTCTAT
ACTGCATGTGGGCAGAACACATTCGGGGGACATTCTGTGATTCTGCGAGC
ATGCCGCTCACCGTAGTTTCTGATGGAACTGGATCGAACGAGACGCGTCT
CGGAGCAGTGAGTGCTATAAACACGGGCTTGAATCACGTGGCTAAGAAAG
GAGCCCAGAGAGCTTTGATCATTGCCGGTGATTGTCTTTTCCCCAACGTT
TCAATCATGTCGCATGTAGAAGACTTTTGCAAGTCTGACCAACATGCTGC
TGCCTTCGCCTATCACCTTGAGGACATTTCAGAAAGCCACAAGCGTGGAA
TGTTCTGGGTCGAAGAACTACGCGATGGCACTACTATCGCAAAGCAGCTC
ATTGAGAAACCGAAGGACACGTCGAAACTTACGTCTGATTTGGCAAGCGC
GCCGGTGTATATGCTGGAAAAGCAATCCTTTGACAGCGTTCCAAAGTTTC
TGGAGCAACATAAGGATCAGTCGCTTGACAAGCGAGATGCTCCAGGATTA
TGGCTTTCCTGGCTCATATCGCAGACTTCTGTTCGCATCTATACGGTGGA
ACATCGTCTGGATGTCGGCAACCTGATGCAGTACAAGGATGCCTTGTGGA
CATTCACGATTCCCTCCCAGTCTCACACTGCATCAAAACTTCGTGACCGT
CTTTCATACGAACCAGCCGTTGGTCGAGCATATCCTCGCGTTGGAATCTT
GGGAAACCCATCAGATGGATTTGAGGGCAAGGTAATATCGGCTTCTATTG
TCTCTGAGGGATATGCTGAAGTCGTTGCCACAACGAACGACAAGTTTGTT
ATCACGCCAAACCCAAAGCACGAGTTCTTCATCGAGTTTGATGGTCTGCC
GCATATGATACAGCGAGCAGATGATTATGGGCTTTCTTATTCAGCTCAGC
CATTAGTTGGGGCCGCATGCATCATGTTTGCCAAGATGTACCAAAAGTAC
AAATCCGAGGGAGACGATGCCTCAAGCCTTAGCTCATTACCGAACTGTCA
GCTCACGTACTCGTCTACCATCCCTACGAAAATAGGCCTCTCTGGCTCTT
CTGCATTCCTTCTGGCAACGTTCAGAGCCTTGGCCAGGTTCTATAACACA
AGTCTGGAGGGAATTTGCCCCGATATGAAGGTATGGGCAGATGTGATGCG
AAATGCAGAAGTGGAACTCTTGGGTATAGCGGGTGGAAGACAAGACCCAA
TTATGGCATTGACGCAGGGCATTGTTCTAATGGATTTCACTGATGGAGGT
CTAGGGAATTGCGAGCGGTTAGATGAGAAACTGTTCCCTGATCTGTGGAT
CTGTTACCATCAATCACCGGGGGAGTCTTCTGGAAAGGTTCATAGCGATC
TTCGCGCTCGTTATGCCAAAGGTGATCAAACTATCTCCGCTGTAGTCAAG
AAGTTAATCGAGTTGGTGGATGACGGCAAAAAGGTGTTAGAAACTGGGGA
ACTTTGTCGCCTACCAGAGCTTTTCAATCGCAATTTTGAACTTAGGACTG
AGCTTGTTGGGGACGTCGCGATAGGGGAGGCCAACAAGAAACTAACGTGC
GTGGCAAAGGAAGCTGGGTTTGCCGCAAAGATGACCGGCAGTGGTGGGTG
TGCATTATGTATTCCTAATCCTGTGAGAACGTTGTCAAAAGACGATGTAT
TGAAAGCCAAAACAATCTTTGAGAGGCATAACCTGGTGTTTAGGAAGGTT
CAGATTCTTGAAAGTCGCCCTTGGATGACTTAA

protein sequence of Ggra1664.t1

>Ggra1664.t1 ID=Ggra1664.t1|Name=Ggra1664.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=661bp
MTPIKRPSIPTEHFGVVLLAAGYGTRLAADIANDRQFSSMASIPKPLLPV
GGEPILTHWLRTVSTLPAISSIVVVSNAAHYSLYCMWAEHIRGTFCDSAS
MPLTVVSDGTGSNETRLGAVSAINTGLNHVAKKGAQRALIIAGDCLFPNV
SIMSHVEDFCKSDQHAAAFAYHLEDISESHKRGMFWVEELRDGTTIAKQL
IEKPKDTSKLTSDLASAPVYMLEKQSFDSVPKFLEQHKDQSLDKRDAPGL
WLSWLISQTSVRIYTVEHRLDVGNLMQYKDALWTFTIPSQSHTASKLRDR
LSYEPAVGRAYPRVGILGNPSDGFEGKVISASIVSEGYAEVVATTNDKFV
ITPNPKHEFFIEFDGLPHMIQRADDYGLSYSAQPLVGAACIMFAKMYQKY
KSEGDDASSLSSLPNCQLTYSSTIPTKIGLSGSSAFLLATFRALARFYNT
SLEGICPDMKVWADVMRNAEVELLGIAGGRQDPIMALTQGIVLMDFTDGG
LGNCERLDEKLFPDLWICYHQSPGESSGKVHSDLRARYAKGDQTISAVVK
KLIELVDDGKKVLETGELCRLPELFNRNFELRTELVGDVAIGEANKKLTC
VAKEAGFAAKMTGSGGCALCIPNPVRTLSKDDVLKAKTIFERHNLVFRKV
QILESRPWMT*

mRNA from alignment at tig00000050_pilon:291266..293248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1664.t1 ID=Ggra1664.t1|Name=Ggra1664.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000050_pilon:291266..293248+ (Gracilaria gracilis GNS1m male)
ATGACGCCGATCAAACGCCCCTCTATTCCCACTGAGCATTTTGGTGTTGT
TCTACTTGCCGCCGGTTATGGAACACGCCTAGCCGCCGATATTGCTAACG
ATCGCCAGTTCTCGTCGATGGCCTCGATTCCCAAACCTCTCTTGCCGGTT
GGAGGTGAACCAATTCTTACACACTGGCTGCGCACTGTTTCTACTTTGCC
TGCTATTTCTAGCATTGTCGTTGTCTCCAATGCTGCCCATTATTCTCTAT
ACTGCATGTGGGCAGAACACATTCGGGGGACATTCTGTGATTCTGCGAGC
ATGCCGCTCACCGTAGTTTCTGATGGAACTGGATCGAACGAGACGCGTCT
CGGAGCAGTGAGTGCTATAAACACGGGCTTGAATCACGTGGCTAAGAAAG
GAGCCCAGAGAGCTTTGATCATTGCCGGTGATTGTCTTTTCCCCAACGTT
TCAATCATGTCGCATGTAGAAGACTTTTGCAAGTCTGACCAACATGCTGC
TGCCTTCGCCTATCACCTTGAGGACATTTCAGAAAGCCACAAGCGTGGAA
TGTTCTGGGTCGAAGAACTACGCGATGGCACTACTATCGCAAAGCAGCTC
ATTGAGAAACCGAAGGACACGTCGAAACTTACGTCTGATTTGGCAAGCGC
GCCGGTGTATATGCTGGAAAAGCAATCCTTTGACAGCGTTCCAAAGTTTC
TGGAGCAACATAAGGATCAGTCGCTTGACAAGCGAGATGCTCCAGGATTA
TGGCTTTCCTGGCTCATATCGCAGACTTCTGTTCGCATCTATACGGTGGA
ACATCGTCTGGATGTCGGCAACCTGATGCAGTACAAGGATGCCTTGTGGA
CATTCACGATTCCCTCCCAGTCTCACACTGCATCAAAACTTCGTGACCGT
CTTTCATACGAACCAGCCGTTGGTCGAGCATATCCTCGCGTTGGAATCTT
GGGAAACCCATCAGATGGATTTGAGGGCAAGGTAATATCGGCTTCTATTG
TCTCTGAGGGATATGCTGAAGTCGTTGCCACAACGAACGACAAGTTTGTT
ATCACGCCAAACCCAAAGCACGAGTTCTTCATCGAGTTTGATGGTCTGCC
GCATATGATACAGCGAGCAGATGATTATGGGCTTTCTTATTCAGCTCAGC
CATTAGTTGGGGCCGCATGCATCATGTTTGCCAAGATGTACCAAAAGTAC
AAATCCGAGGGAGACGATGCCTCAAGCCTTAGCTCATTACCGAACTGTCA
GCTCACGTACTCGTCTACCATCCCTACGAAAATAGGCCTCTCTGGCTCTT
CTGCATTCCTTCTGGCAACGTTCAGAGCCTTGGCCAGGTTCTATAACACA
AGTCTGGAGGGAATTTGCCCCGATATGAAGGTATGGGCAGATGTGATGCG
AAATGCAGAAGTGGAACTCTTGGGTATAGCGGGTGGAAGACAAGACCCAA
TTATGGCATTGACGCAGGGCATTGTTCTAATGGATTTCACTGATGGAGGT
CTAGGGAATTGCGAGCGGTTAGATGAGAAACTGTTCCCTGATCTGTGGAT
CTGTTACCATCAATCACCGGGGGAGTCTTCTGGAAAGGTTCATAGCGATC
TTCGCGCTCGTTATGCCAAAGGTGATCAAACTATCTCCGCTGTAGTCAAG
AAGTTAATCGAGTTGGTGGATGACGGCAAAAAGGTGTTAGAAACTGGGGA
ACTTTGTCGCCTACCAGAGCTTTTCAATCGCAATTTTGAACTTAGGACTG
AGCTTGTTGGGGACGTCGCGATAGGGGAGGCCAACAAGAAACTAACGTGC
GTGGCAAAGGAAGCTGGGTTTGCCGCAAAGATGACCGGCAGTGGTGGGTG
TGCATTATGTATTCCTAATCCTGTGAGAACGTTGTCAAAAGACGATGTAT
TGAAAGCCAAAACAATCTTTGAGAGGCATAACCTGGTGTTTAGGAAGGTT
CAGATTCTTGAAAGTCGCCCTTGGATGACTTAA

Coding sequence (CDS) from alignment at tig00000050_pilon:291266..293248+

>Ggra1664.t1 ID=Ggra1664.t1|Name=Ggra1664.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00000050_pilon:291266..293248+ (Gracilaria gracilis GNS1m male)
ATGACGCCGATCAAACGCCCCTCTATTCCCACTGAGCATTTTGGTGTTGT
TCTACTTGCCGCCGGTTATGGAACACGCCTAGCCGCCGATATTGCTAACG
ATCGCCAGTTCTCGTCGATGGCCTCGATTCCCAAACCTCTCTTGCCGGTT
GGAGGTGAACCAATTCTTACACACTGGCTGCGCACTGTTTCTACTTTGCC
TGCTATTTCTAGCATTGTCGTTGTCTCCAATGCTGCCCATTATTCTCTAT
ACTGCATGTGGGCAGAACACATTCGGGGGACATTCTGTGATTCTGCGAGC
ATGCCGCTCACCGTAGTTTCTGATGGAACTGGATCGAACGAGACGCGTCT
CGGAGCAGTGAGTGCTATAAACACGGGCTTGAATCACGTGGCTAAGAAAG
GAGCCCAGAGAGCTTTGATCATTGCCGGTGATTGTCTTTTCCCCAACGTT
TCAATCATGTCGCATGTAGAAGACTTTTGCAAGTCTGACCAACATGCTGC
TGCCTTCGCCTATCACCTTGAGGACATTTCAGAAAGCCACAAGCGTGGAA
TGTTCTGGGTCGAAGAACTACGCGATGGCACTACTATCGCAAAGCAGCTC
ATTGAGAAACCGAAGGACACGTCGAAACTTACGTCTGATTTGGCAAGCGC
GCCGGTGTATATGCTGGAAAAGCAATCCTTTGACAGCGTTCCAAAGTTTC
TGGAGCAACATAAGGATCAGTCGCTTGACAAGCGAGATGCTCCAGGATTA
TGGCTTTCCTGGCTCATATCGCAGACTTCTGTTCGCATCTATACGGTGGA
ACATCGTCTGGATGTCGGCAACCTGATGCAGTACAAGGATGCCTTGTGGA
CATTCACGATTCCCTCCCAGTCTCACACTGCATCAAAACTTCGTGACCGT
CTTTCATACGAACCAGCCGTTGGTCGAGCATATCCTCGCGTTGGAATCTT
GGGAAACCCATCAGATGGATTTGAGGGCAAGGTAATATCGGCTTCTATTG
TCTCTGAGGGATATGCTGAAGTCGTTGCCACAACGAACGACAAGTTTGTT
ATCACGCCAAACCCAAAGCACGAGTTCTTCATCGAGTTTGATGGTCTGCC
GCATATGATACAGCGAGCAGATGATTATGGGCTTTCTTATTCAGCTCAGC
CATTAGTTGGGGCCGCATGCATCATGTTTGCCAAGATGTACCAAAAGTAC
AAATCCGAGGGAGACGATGCCTCAAGCCTTAGCTCATTACCGAACTGTCA
GCTCACGTACTCGTCTACCATCCCTACGAAAATAGGCCTCTCTGGCTCTT
CTGCATTCCTTCTGGCAACGTTCAGAGCCTTGGCCAGGTTCTATAACACA
AGTCTGGAGGGAATTTGCCCCGATATGAAGGTATGGGCAGATGTGATGCG
AAATGCAGAAGTGGAACTCTTGGGTATAGCGGGTGGAAGACAAGACCCAA
TTATGGCATTGACGCAGGGCATTGTTCTAATGGATTTCACTGATGGAGGT
CTAGGGAATTGCGAGCGGTTAGATGAGAAACTGTTCCCTGATCTGTGGAT
CTGTTACCATCAATCACCGGGGGAGTCTTCTGGAAAGGTTCATAGCGATC
TTCGCGCTCGTTATGCCAAAGGTGATCAAACTATCTCCGCTGTAGTCAAG
AAGTTAATCGAGTTGGTGGATGACGGCAAAAAGGTGTTAGAAACTGGGGA
ACTTTGTCGCCTACCAGAGCTTTTCAATCGCAATTTTGAACTTAGGACTG
AGCTTGTTGGGGACGTCGCGATAGGGGAGGCCAACAAGAAACTAACGTGC
GTGGCAAAGGAAGCTGGGTTTGCCGCAAAGATGACCGGCAGTGGTGGGTG
TGCATTATGTATTCCTAATCCTGTGAGAACGTTGTCAAAAGACGATGTAT
TGAAAGCCAAAACAATCTTTGAGAGGCATAACCTGGTGTTTAGGAAGGTT
CAGATTCTTGAAAGTCGCCCTTGGATGACTTAA