Ggra1662.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1662.t1
Unique NameGgra1662.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:288105..288680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog428126.CLOSPI_01033
Preferred nametspO
PFAMsTspO_MBR
Max annot lvl1239|Firmicutes
KEGG koko:K05770
KEGG TC9.A.24
KEGG Pathwayko04080,ko04214,ko04979,ko05166,map04080,map04214,map04979,map05166
Evalue3.28e-14
EggNOG OGsCOG3476@1|root,COG3476@2|Bacteria,1V896@1239|Firmicutes
DescriptionTspO MBR family protein
COG categoryT
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1662Ggra1662Gracilaria gracilis GNS1m malegenetig00000050_pilon 288105..288680 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1662.t1.stop1Ggra1662.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 288105..288107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1662.t1.CDS1Ggra1662.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 288105..288680 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1662.t1.exon1Ggra1662.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 288105..288680 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1662.t1.start1Ggra1662.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 288678..288680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1662.t1Ggra1662.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 288105..288680 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1662.t1 ID=Ggra1662.t1|Name=Ggra1662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MTSATWFQPPANLPLYAVFILIPLLGGVLSFVSSDNSPSSLAWRRSLRKS
SLTPNTPITAITWVVLYLCMGHASFVVYTLSYPPTVLSPCLVAYLTQCLL
NHFFIIVLFGLQRIDLALLMIVPLWFATALTMLLFYDVSLLAGRLMAPVF
AWVSFNVYLNFFLYANNHVYADYQMHAIAHPPVNYLKLKPS*
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spliced messenger RNA

>Ggra1662.t1 ID=Ggra1662.t1|Name=Ggra1662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000050_pilon:288105..288680- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCCGCTACATGGTTCCAGCCGCCCGCCAATCTCCCCCTGTACGC
CGTCTTCATTCTCATCCCGCTGCTGGGTGGCGTGCTTTCGTTCGTATCGT
CCGATAACTCCCCCTCGTCTCTGGCATGGCGCCGCTCCTTACGCAAGTCC
TCCCTCACTCCCAACACCCCCATCACCGCCATCACCTGGGTCGTGCTCTA
CCTATGCATGGGCCATGCCTCCTTCGTCGTGTACACGCTATCATACCCGC
CCACAGTACTGTCGCCCTGCCTCGTCGCTTACCTAACACAATGCCTGCTT
AATCACTTCTTCATCATTGTGCTCTTCGGCCTGCAGCGCATTGATCTCGC
CTTGCTCATGATCGTGCCGCTGTGGTTTGCCACCGCTCTCACCATGTTGC
TCTTCTACGACGTGTCGCTGCTCGCCGGCCGTCTCATGGCGCCCGTCTTT
GCCTGGGTGTCCTTCAACGTTTACCTTAACTTTTTCCTGTATGCCAACAA
CCACGTCTACGCCGACTATCAGATGCACGCCATTGCGCATCCCCCCGTCA
ACTACCTCAAGCTCAAGCCCTCGTAG
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protein sequence of Ggra1662.t1

>Ggra1662.t1 ID=Ggra1662.t1|Name=Ggra1662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MTSATWFQPPANLPLYAVFILIPLLGGVLSFVSSDNSPSSLAWRRSLRKS
SLTPNTPITAITWVVLYLCMGHASFVVYTLSYPPTVLSPCLVAYLTQCLL
NHFFIIVLFGLQRIDLALLMIVPLWFATALTMLLFYDVSLLAGRLMAPVF
AWVSFNVYLNFFLYANNHVYADYQMHAIAHPPVNYLKLKPS*
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mRNA from alignment at tig00000050_pilon:288105..288680-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1662.t1 ID=Ggra1662.t1|Name=Ggra1662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000050_pilon:288105..288680- (Gracilaria gracilis GNS1m male)
ATGACTTCCGCTACATGGTTCCAGCCGCCCGCCAATCTCCCCCTGTACGC
CGTCTTCATTCTCATCCCGCTGCTGGGTGGCGTGCTTTCGTTCGTATCGT
CCGATAACTCCCCCTCGTCTCTGGCATGGCGCCGCTCCTTACGCAAGTCC
TCCCTCACTCCCAACACCCCCATCACCGCCATCACCTGGGTCGTGCTCTA
CCTATGCATGGGCCATGCCTCCTTCGTCGTGTACACGCTATCATACCCGC
CCACAGTACTGTCGCCCTGCCTCGTCGCTTACCTAACACAATGCCTGCTT
AATCACTTCTTCATCATTGTGCTCTTCGGCCTGCAGCGCATTGATCTCGC
CTTGCTCATGATCGTGCCGCTGTGGTTTGCCACCGCTCTCACCATGTTGC
TCTTCTACGACGTGTCGCTGCTCGCCGGCCGTCTCATGGCGCCCGTCTTT
GCCTGGGTGTCCTTCAACGTTTACCTTAACTTTTTCCTGTATGCCAACAA
CCACGTCTACGCCGACTATCAGATGCACGCCATTGCGCATCCCCCCGTCA
ACTACCTCAAGCTCAAGCCCTCGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:288105..288680-

>Ggra1662.t1 ID=Ggra1662.t1|Name=Ggra1662.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000050_pilon:288105..288680- (Gracilaria gracilis GNS1m male)
ATGACTTCCGCTACATGGTTCCAGCCGCCCGCCAATCTCCCCCTGTACGC
CGTCTTCATTCTCATCCCGCTGCTGGGTGGCGTGCTTTCGTTCGTATCGT
CCGATAACTCCCCCTCGTCTCTGGCATGGCGCCGCTCCTTACGCAAGTCC
TCCCTCACTCCCAACACCCCCATCACCGCCATCACCTGGGTCGTGCTCTA
CCTATGCATGGGCCATGCCTCCTTCGTCGTGTACACGCTATCATACCCGC
CCACAGTACTGTCGCCCTGCCTCGTCGCTTACCTAACACAATGCCTGCTT
AATCACTTCTTCATCATTGTGCTCTTCGGCCTGCAGCGCATTGATCTCGC
CTTGCTCATGATCGTGCCGCTGTGGTTTGCCACCGCTCTCACCATGTTGC
TCTTCTACGACGTGTCGCTGCTCGCCGGCCGTCTCATGGCGCCCGTCTTT
GCCTGGGTGTCCTTCAACGTTTACCTTAACTTTTTCCTGTATGCCAACAA
CCACGTCTACGCCGACTATCAGATGCACGCCATTGCGCATCCCCCCGTCA
ACTACCTCAAGCTCAAGCCCTCGTAG
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