Ggra1658.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1658.t1
Unique NameGgra1658.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:282390..282863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1658Ggra1658Gracilaria gracilis GNS1m malegenetig00000050_pilon 282390..282863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1658.t1.start1Ggra1658.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 282390..282392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1658.t1.CDS1Ggra1658.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 282390..282863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1658.t1.exon1Ggra1658.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 282390..282863 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1658.t1.stop1Ggra1658.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 282861..282863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1658.t1Ggra1658.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 282390..282863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1658.t1 ID=Ggra1658.t1|Name=Ggra1658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=158bp
MSHPQQQIMNDMTWHMDFMHSSRQPGDVQSNAFLTDEGLQKALQNLEALK
QTTVQQFSTAQTVQSEHPFAYQLPSSQLEAPSIGMGYTSYPTSHVANSRD
VYRSYRSMQMNAPAPHAYYHEPSAHTVYSNSRNNGERGMSGRPFAMDQNC
RAKPSKE*
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spliced messenger RNA

>Ggra1658.t1 ID=Ggra1658.t1|Name=Ggra1658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000050_pilon:282390..282863+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCATCCACAGCAACAAATCATGAACGATATGACTTGGCATATGGA
CTTCATGCATTCCAGTCGGCAACCCGGTGACGTCCAGTCGAACGCGTTTC
TAACGGATGAAGGATTACAAAAGGCTCTCCAAAACTTAGAAGCCCTCAAG
CAAACTACCGTGCAGCAATTCTCCACCGCCCAAACTGTACAATCTGAGCA
CCCCTTCGCATACCAACTGCCGTCCTCGCAACTTGAAGCCCCCTCGATTG
GAATGGGATACACTTCGTACCCCACTAGTCACGTCGCGAACAGCCGCGAT
GTGTATCGCTCGTATAGAAGCATGCAGATGAATGCCCCTGCACCTCATGC
CTACTATCATGAACCAAGCGCGCATACGGTTTACAGCAATTCTAGGAACA
ACGGTGAACGGGGCATGAGTGGCAGACCTTTCGCGATGGATCAGAATTGC
CGGGCAAAGCCTTCAAAAGAATGA
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protein sequence of Ggra1658.t1

>Ggra1658.t1 ID=Ggra1658.t1|Name=Ggra1658.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MSHPQQQIMNDMTWHMDFMHSSRQPGDVQSNAFLTDEGLQKALQNLEALK
QTTVQQFSTAQTVQSEHPFAYQLPSSQLEAPSIGMGYTSYPTSHVANSRD
VYRSYRSMQMNAPAPHAYYHEPSAHTVYSNSRNNGERGMSGRPFAMDQNC
RAKPSKE*
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mRNA from alignment at tig00000050_pilon:282390..282863+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1658.t1 ID=Ggra1658.t1|Name=Ggra1658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000050_pilon:282390..282863+ (Gracilaria gracilis GNS1m male)
ATGAGTCATCCACAGCAACAAATCATGAACGATATGACTTGGCATATGGA
CTTCATGCATTCCAGTCGGCAACCCGGTGACGTCCAGTCGAACGCGTTTC
TAACGGATGAAGGATTACAAAAGGCTCTCCAAAACTTAGAAGCCCTCAAG
CAAACTACCGTGCAGCAATTCTCCACCGCCCAAACTGTACAATCTGAGCA
CCCCTTCGCATACCAACTGCCGTCCTCGCAACTTGAAGCCCCCTCGATTG
GAATGGGATACACTTCGTACCCCACTAGTCACGTCGCGAACAGCCGCGAT
GTGTATCGCTCGTATAGAAGCATGCAGATGAATGCCCCTGCACCTCATGC
CTACTATCATGAACCAAGCGCGCATACGGTTTACAGCAATTCTAGGAACA
ACGGTGAACGGGGCATGAGTGGCAGACCTTTCGCGATGGATCAGAATTGC
CGGGCAAAGCCTTCAAAAGAATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:282390..282863+

>Ggra1658.t1 ID=Ggra1658.t1|Name=Ggra1658.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=474bp|location=Sequence derived from alignment at tig00000050_pilon:282390..282863+ (Gracilaria gracilis GNS1m male)
ATGAGTCATCCACAGCAACAAATCATGAACGATATGACTTGGCATATGGA
CTTCATGCATTCCAGTCGGCAACCCGGTGACGTCCAGTCGAACGCGTTTC
TAACGGATGAAGGATTACAAAAGGCTCTCCAAAACTTAGAAGCCCTCAAG
CAAACTACCGTGCAGCAATTCTCCACCGCCCAAACTGTACAATCTGAGCA
CCCCTTCGCATACCAACTGCCGTCCTCGCAACTTGAAGCCCCCTCGATTG
GAATGGGATACACTTCGTACCCCACTAGTCACGTCGCGAACAGCCGCGAT
GTGTATCGCTCGTATAGAAGCATGCAGATGAATGCCCCTGCACCTCATGC
CTACTATCATGAACCAAGCGCGCATACGGTTTACAGCAATTCTAGGAACA
ACGGTGAACGGGGCATGAGTGGCAGACCTTTCGCGATGGATCAGAATTGC
CGGGCAAAGCCTTCAAAAGAATGA
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