Ggra1656.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1656.t1
Unique NameGgra1656.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:277064..278539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704860.1
Preferred nameCPI1
Max annot lvl2759|Eukaryota
KEGG rclassRC00994
KEGG koko:K08246
KEGG ReactionR03775
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
GOsGO:0005575,GO:0016020
Evalue3.77e-78
EggNOG OGs28HCW@1|root,2QPR8@2759|Eukaryota
EC5.5.1.9
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1656Ggra1656Gracilaria gracilis GNS1m malegenetig00000050_pilon 277064..278539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1Ggra1656.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 277064..278539 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1.stop1Ggra1656.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 277064..277066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1.CDS1Ggra1656.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 277064..277085 -
Ggra1656.t1.CDS2Ggra1656.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 277227..277285 -
Ggra1656.t1.CDS3Ggra1656.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 277655..278539 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1.exon1Ggra1656.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 277064..277085 -
Ggra1656.t1.exon2Ggra1656.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 277227..277285 -
Ggra1656.t1.exon3Ggra1656.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 277655..278539 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1.intron1Ggra1656.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 277086..277226 -
Ggra1656.t1.intron2Ggra1656.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 277286..277654 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1656.t1.start1Ggra1656.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 278537..278539 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1656.t1 ID=Ggra1656.t1|Name=Ggra1656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=322bp
MVKQTFKPPSKTVKKPHADTSSTQPSWFAPDASKAYYEKLSLIWAPVSMF
ILLVVILGTPIYKSCDRNSYLLISLVGCLPGFVVPILFPCEEDRKRAFCE
RFWVKGTVWIAVFGFYGNYFWTHYFYHLLGAKYLFDSHRLNDVPIVCFTC
TFFYFTFYFNFASLLLRRLSFNSRHFPPYLRTILWCLNVFILSYSTAVFE
AVSIQHFPLYTFDDRFSFVTIGSVFYGLYFLVGFPMFLALDETYVKDELR
RYTLWEIVVHSCGASAIVTVLLDFWRLTIGSLEQIGKAAQYPLPFVRSRD
CRSRAKPTKCCSDKKTLRSFV*
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spliced messenger RNA

>Ggra1656.t1 ID=Ggra1656.t1|Name=Ggra1656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00000050_pilon:277064..278539- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGCAGACGTTCAAGCCGCCTTCGAAGACGGTGAAGAAACCACA
TGCCGACACTTCGTCAACCCAGCCGTCTTGGTTTGCACCCGATGCTTCGA
AAGCGTACTACGAGAAGCTGTCGTTGATATGGGCGCCGGTGTCCATGTTT
ATTCTTCTGGTCGTGATTCTAGGCACTCCAATATACAAGTCATGTGATAG
GAATTCCTATCTTTTGATATCTCTTGTAGGATGTTTACCAGGCTTTGTGG
TTCCCATTTTGTTCCCATGCGAGGAAGACCGTAAACGAGCTTTTTGCGAG
CGCTTTTGGGTGAAAGGAACCGTATGGATTGCTGTTTTTGGCTTTTACGG
AAACTACTTTTGGACGCATTACTTCTATCACTTACTTGGTGCCAAGTATT
TGTTTGATTCGCATCGTCTCAATGACGTTCCAATCGTTTGCTTTACGTGC
ACTTTCTTTTACTTCACTTTCTATTTCAATTTCGCATCCTTGTTGTTACG
TCGCCTTTCGTTCAACTCTCGTCATTTCCCGCCTTATCTTCGCACCATTC
TATGGTGCTTGAACGTCTTTATTCTTTCTTACTCTACTGCCGTGTTTGAA
GCTGTGTCAATTCAGCACTTTCCGCTCTATACTTTCGATGATCGGTTTTC
CTTTGTCACAATCGGCTCTGTGTTTTATGGGCTGTACTTCTTGGTTGGCT
TTCCCATGTTCTTGGCGCTTGATGAAACGTACGTCAAGGATGAGCTTCGA
AGATACACATTGTGGGAAATTGTTGTTCATTCTTGTGGTGCATCAGCGAT
TGTGACTGTGTTGCTTGACTTTTGGCGTTTGACAATTGGTTCTCTTGAAC
AAATTGGTAAAGCTGCTCAATACCCGCTTCCCTTTGTCAGGTCTCGCGAC
TGCCGCTCACGGGCAAAACCCACAAAGTGCTGTTCCGATAAGAAAACGCT
GCGATCATTCGTATAG
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protein sequence of Ggra1656.t1

>Ggra1656.t1 ID=Ggra1656.t1|Name=Ggra1656.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=322bp
MVKQTFKPPSKTVKKPHADTSSTQPSWFAPDASKAYYEKLSLIWAPVSMF
ILLVVILGTPIYKSCDRNSYLLISLVGCLPGFVVPILFPCEEDRKRAFCE
RFWVKGTVWIAVFGFYGNYFWTHYFYHLLGAKYLFDSHRLNDVPIVCFTC
TFFYFTFYFNFASLLLRRLSFNSRHFPPYLRTILWCLNVFILSYSTAVFE
AVSIQHFPLYTFDDRFSFVTIGSVFYGLYFLVGFPMFLALDETYVKDELR
RYTLWEIVVHSCGASAIVTVLLDFWRLTIGSLEQIGKAAQYPLPFVRSRD
CRSRAKPTKCCSDKKTLRSFV*
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mRNA from alignment at tig00000050_pilon:277064..278539-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1656.t1 ID=Ggra1656.t1|Name=Ggra1656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000050_pilon:277064..278539- (Gracilaria gracilis GNS1m male)
ATGGTGAAGCAGACGTTCAAGCCGCCTTCGAAGACGGTGAAGAAACCACA
TGCCGACACTTCGTCAACCCAGCCGTCTTGGTTTGCACCCGATGCTTCGA
AAGCGTACTACGAGAAGCTGTCGTTGATATGGGCGCCGGTGTCCATGTTT
ATTCTTCTGGTCGTGATTCTAGGCACTCCAATATACAAGTCATGTGATAG
GAATTCCTATCTTTTGATATCTCTTGTAGGATGTTTACCAGGCTTTGTGG
TTCCCATTTTGTTCCCATGCGAGGAAGACCGTAAACGAGCTTTTTGCGAG
CGCTTTTGGGTGAAAGGAACCGTATGGATTGCTGTTTTTGGCTTTTACGG
AAACTACTTTTGGACGCATTACTTCTATCACTTACTTGGTGCCAAGTATT
TGTTTGATTCGCATCGTCTCAATGACGTTCCAATCGTTTGCTTTACGTGC
ACTTTCTTTTACTTCACTTTCTATTTCAATTTCGCATCCTTGTTGTTACG
TCGCCTTTCGTTCAACTCTCGTCATTTCCCGCCTTATCTTCGCACCATTC
TATGGTGCTTGAACGTCTTTATTCTTTCTTACTCTACTGCCGTGTTTGAA
GCTGTGTCAATTCAGCACTTTCCGCTCTATACTTTCGATGATCGGTTTTC
CTTTGTCACAATCGGCTCTGTGTTTTATGGGCTGTACTTCTTGGTTGGCT
TTCCCATGTTCTTGGCGCTTGATGAAACGTACGTCAAGGATGAGCTTCGA
AGATACACATTGTGGGAAATTGTTGTTCATTCTTGTGGTGCATCAGCGAT
TGTGACTGTGTTGCTTGACTTTTGGCGTTTGACAATTGGTTCTCTTGAAC
AAATTGGTAAAGCTGCTCAATACCCGCTTCCCTTTGTATATCAATCGAAT
GTTTCTTCTGTGATTCACACGTCCTTGTAGCCTCGCTCGTTTTGTTTCTT
GTAACAAGACTTTTAGTGTTCTTTGGAGGTATATTGGTGGTTTTGGTACT
CGAGATTTCAGTTTCTTCTTCGTTGAACGTGCTGGGAAGCAAAAGAGCAA
AGAAGAAAGAAAGAAGAACAAGAACAAGAAAAATGAGGCTCCCATTTGGT
GTTGAAGTGTTGAGTGTAGCTGTCCAAAGCGGCGAGTCTTCCTCTGTCTT
TTGGCGTTGAAGAACACCGTCAAAACAGATGAACTTCCCCGAACTTCCCA
GAGATATCCTTATGGCCTCTACATAACAATTCATACCTGCGTTATTTGAC
TAAGGTCAGGTCTCGCGACTGCCGCTCACGGGCAAAACCCACAAAGTGCT
GTTCCGATAAGAAGTATGTCGATGTCTGCGACCCGATTCGCATCCTCCTC
CAGCATAAAACTGAGCAAGCGCCACTTCTTCTTTTCAGAACACGTTCTGT
TGCGATACCCACTAACCGACACTTCCATAATCGACGAATTACCTACATGA
GCAGAACGCTGCGATCATTCGTATAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:277064..278539-

>Ggra1656.t1 ID=Ggra1656.t1|Name=Ggra1656.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=966bp|location=Sequence derived from alignment at tig00000050_pilon:277064..278539- (Gracilaria gracilis GNS1m male)
ATGGTGAAGCAGACGTTCAAGCCGCCTTCGAAGACGGTGAAGAAACCACA
TGCCGACACTTCGTCAACCCAGCCGTCTTGGTTTGCACCCGATGCTTCGA
AAGCGTACTACGAGAAGCTGTCGTTGATATGGGCGCCGGTGTCCATGTTT
ATTCTTCTGGTCGTGATTCTAGGCACTCCAATATACAAGTCATGTGATAG
GAATTCCTATCTTTTGATATCTCTTGTAGGATGTTTACCAGGCTTTGTGG
TTCCCATTTTGTTCCCATGCGAGGAAGACCGTAAACGAGCTTTTTGCGAG
CGCTTTTGGGTGAAAGGAACCGTATGGATTGCTGTTTTTGGCTTTTACGG
AAACTACTTTTGGACGCATTACTTCTATCACTTACTTGGTGCCAAGTATT
TGTTTGATTCGCATCGTCTCAATGACGTTCCAATCGTTTGCTTTACGTGC
ACTTTCTTTTACTTCACTTTCTATTTCAATTTCGCATCCTTGTTGTTACG
TCGCCTTTCGTTCAACTCTCGTCATTTCCCGCCTTATCTTCGCACCATTC
TATGGTGCTTGAACGTCTTTATTCTTTCTTACTCTACTGCCGTGTTTGAA
GCTGTGTCAATTCAGCACTTTCCGCTCTATACTTTCGATGATCGGTTTTC
CTTTGTCACAATCGGCTCTGTGTTTTATGGGCTGTACTTCTTGGTTGGCT
TTCCCATGTTCTTGGCGCTTGATGAAACGTACGTCAAGGATGAGCTTCGA
AGATACACATTGTGGGAAATTGTTGTTCATTCTTGTGGTGCATCAGCGAT
TGTGACTGTGTTGCTTGACTTTTGGCGTTTGACAATTGGTTCTCTTGAAC
AAATTGGTAAAGCTGCTCAATACCCGCTTCCCTTTGTCAGGTCTCGCGAC
TGCCGCTCACGGGCAAAACCCACAAAGTGCTGTTCCGATAAGAAAACGCT
GCGATCATTCGTATAG
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