Ggra1654.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1654.t1
Unique NameGgra1654.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:275028..275503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LG49
Preferred nameACN9
PFAMsComplex1_LYR_2
Max annot lvl2759|Eukaryota
KEGG koko:K08827,ko:K19950
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006082,GO:0006105,GO:0006109,GO:0006111,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009628,GO:0009889,GO:0009987,GO:0010675,GO:0010906,GO:0015976,GO:0016043,GO:0017144,GO:0019222,GO:0019752,GO:0022607,GO:0031323,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0033108,GO:0034552,GO:0034553,GO:0034622,GO:0036296,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050879,GO:0050881,GO:0050896,GO:0055093,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0071704,GO:0071840,GO:0080090
Evalue1.42e-11
EggNOG OGsKOG4100@1|root,KOG4100@2759|Eukaryota
EC2.7.11.1
Descriptionmitochondrial respiratory chain complex II assembly
COG categoryS
BRITEko00000,ko01000,ko01001,ko03041,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1654Ggra1654Gracilaria gracilis GNS1m malegenetig00000050_pilon 275028..275503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1Ggra1654.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 275028..275503 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1.start1Ggra1654.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 275028..275030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1.CDS1Ggra1654.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 275028..275081 +
Ggra1654.t1.CDS2Ggra1654.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 275152..275256 +
Ggra1654.t1.CDS3Ggra1654.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 275348..275503 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1.exon1Ggra1654.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 275028..275081 +
Ggra1654.t1.exon2Ggra1654.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 275152..275256 +
Ggra1654.t1.exon3Ggra1654.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 275348..275503 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1.intron1Ggra1654.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 275082..275151 +
Ggra1654.t1.intron2Ggra1654.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 275257..275347 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1654.t1.stop1Ggra1654.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 275501..275503 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1654.t1 ID=Ggra1654.t1|Name=Ggra1654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=105bp
MRLHRLKLPELQRSMGDQYLRQEFRAHRDVKPDQEKQFLQQWEEYAAHLT
LEADMFGLGRDLPERDIETLSDDQREQLERLKATAVSVGVQERTEVGENP
YNEK*
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spliced messenger RNA

>Ggra1654.t1 ID=Ggra1654.t1|Name=Ggra1654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000050_pilon:275028..275503+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTGCATCGACTAAAGCTTCCAGAGCTTCAAAGATCAATGGGCGA
CCAGTACCTCCGTCAAGAATTTCGAGCACATCGAGACGTGAAACCAGACC
AGGAAAAGCAATTTCTCCAACAATGGGAGGAATATGCCGCTCATCTCACT
TTAGAAGCTGATATGTTCGGTTTGGGAAGGGATCTTCCAGAACGAGATAT
AGAAACCCTGAGCGACGACCAAAGAGAGCAGCTTGAACGATTGAAAGCCA
CAGCAGTTAGCGTTGGGGTACAGGAAAGAACAGAGGTTGGTGAGAATCCA
TACAATGAAAAGTAA
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protein sequence of Ggra1654.t1

>Ggra1654.t1 ID=Ggra1654.t1|Name=Ggra1654.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=105bp
MRLHRLKLPELQRSMGDQYLRQEFRAHRDVKPDQEKQFLQQWEEYAAHLT
LEADMFGLGRDLPERDIETLSDDQREQLERLKATAVSVGVQERTEVGENP
YNEK*
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mRNA from alignment at tig00000050_pilon:275028..275503+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1654.t1 ID=Ggra1654.t1|Name=Ggra1654.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=476bp|location=Sequence derived from alignment at tig00000050_pilon:275028..275503+ (Gracilaria gracilis GNS1m male)
ATGCGATTGCATCGACTAAAGCTTCCAGAGCTTCAAAGATCAATGGGCGA
CCAGGTACGGATCTATAGCATACCCCGGCCGTGATTGATCCCATCTGACC
ATCGCATCCAAATCCTGCTCGCAGTACCTCCGTCAAGAATTTCGAGCACA
TCGAGACGTGAAACCAGACCAGGAAAAGCAATTTCTCCAACAATGGGAGG
AATATGCCGCTCATCTCACTTTAGAAGCTGTATGCGCAATTCTCTCTCTA
CTCCACTTCTGCATTTGAATTCATACTGCGTACACTAACCTGCCGCCTAA
TATATTACTCCCCTTCACAGGATATGTTCGGTTTGGGAAGGGATCTTCCA
GAACGAGATATAGAAACCCTGAGCGACGACCAAAGAGAGCAGCTTGAACG
ATTGAAAGCCACAGCAGTTAGCGTTGGGGTACAGGAAAGAACAGAGGTTG
GTGAGAATCCATACAATGAAAAGTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:275028..275503+

>Ggra1654.t1 ID=Ggra1654.t1|Name=Ggra1654.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=315bp|location=Sequence derived from alignment at tig00000050_pilon:275028..275503+ (Gracilaria gracilis GNS1m male)
ATGCGATTGCATCGACTAAAGCTTCCAGAGCTTCAAAGATCAATGGGCGA
CCAGTACCTCCGTCAAGAATTTCGAGCACATCGAGACGTGAAACCAGACC
AGGAAAAGCAATTTCTCCAACAATGGGAGGAATATGCCGCTCATCTCACT
TTAGAAGCTGATATGTTCGGTTTGGGAAGGGATCTTCCAGAACGAGATAT
AGAAACCCTGAGCGACGACCAAAGAGAGCAGCTTGAACGATTGAAAGCCA
CAGCAGTTAGCGTTGGGGTACAGGAAAGAACAGAGGTTGGTGAGAATCCA
TACAATGAAAAGTAA
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