Ggra1653.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1653.t1
Unique NameGgra1653.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:274253..274621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3702.AT3G54210.1
PFAMsRibosomal_L17
Max annot lvl35493|Streptophyta
KEGG koko:K02879
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015934,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Evalue7.86e-61
EggNOG OGsCOG0203@1|root,KOG3280@2759|Eukaryota,37HJC@33090|Viridiplantae,3GA4W@35493|Streptophyta,3HNDJ@3699|Brassicales
DescriptionBelongs to the bacterial ribosomal protein bL17 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1653Ggra1653Gracilaria gracilis GNS1m malegenetig00000050_pilon 274253..274621 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1653.t1.start1Ggra1653.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 274253..274255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1653.t1.CDS1Ggra1653.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 274253..274621 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1653.t1.exon1Ggra1653.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 274253..274621 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1653.t1.stop1Ggra1653.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 274619..274621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1653.t1Ggra1653.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 274253..274621 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1653.t1 ID=Ggra1653.t1|Name=Ggra1653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=123bp
MPDIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAKAV
RKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQVPERYGDRNGGY
TRVLRTMPRRGDNAPMGIIELV*
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spliced messenger RNA

>Ggra1653.t1 ID=Ggra1653.t1|Name=Ggra1653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00000050_pilon:274253..274621+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGATATCGTTGCAATTCGTCATGGTAAACGTATTCCGAAATTGAA
CAAGCCTGCGGATCAACGTAAGGCGCTTCTTCGTGCGCTGACCACAGAAT
TGATTCGTCATGGCCGTATTAAGACCACTCATGCTCGTGCAAAGGCTGTT
AGGAAGACGGCTGATCATATGATTACCTTGGCTAAGAATGGATCTTTGCA
TGCTAGACGACAGGCGTTGGGATATATATACGATAAGCAGTTGGTTCATG
CTCTGTTTGACCAGGTGCCGGAGAGGTATGGTGATCGGAATGGCGGTTAC
ACCCGTGTTCTGCGCACTATGCCTAGAAGGGGTGATAATGCTCCCATGGG
TATAATTGAGCTTGTTTAG
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protein sequence of Ggra1653.t1

>Ggra1653.t1 ID=Ggra1653.t1|Name=Ggra1653.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=123bp
MPDIVAIRHGKRIPKLNKPADQRKALLRALTTELIRHGRIKTTHARAKAV
RKTADHMITLAKNGSLHARRQALGYIYDKQLVHALFDQVPERYGDRNGGY
TRVLRTMPRRGDNAPMGIIELV*
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mRNA from alignment at tig00000050_pilon:274253..274621+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1653.t1 ID=Ggra1653.t1|Name=Ggra1653.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00000050_pilon:274253..274621+ (Gracilaria gracilis GNS1m male)
ATGCCGGATATCGTTGCAATTCGTCATGGTAAACGTATTCCGAAATTGAA
CAAGCCTGCGGATCAACGTAAGGCGCTTCTTCGTGCGCTGACCACAGAAT
TGATTCGTCATGGCCGTATTAAGACCACTCATGCTCGTGCAAAGGCTGTT
AGGAAGACGGCTGATCATATGATTACCTTGGCTAAGAATGGATCTTTGCA
TGCTAGACGACAGGCGTTGGGATATATATACGATAAGCAGTTGGTTCATG
CTCTGTTTGACCAGGTGCCGGAGAGGTATGGTGATCGGAATGGCGGTTAC
ACCCGTGTTCTGCGCACTATGCCTAGAAGGGGTGATAATGCTCCCATGGG
TATAATTGAGCTTGTTTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:274253..274621+

>Ggra1653.t1 ID=Ggra1653.t1|Name=Ggra1653.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=369bp|location=Sequence derived from alignment at tig00000050_pilon:274253..274621+ (Gracilaria gracilis GNS1m male)
ATGCCGGATATCGTTGCAATTCGTCATGGTAAACGTATTCCGAAATTGAA
CAAGCCTGCGGATCAACGTAAGGCGCTTCTTCGTGCGCTGACCACAGAAT
TGATTCGTCATGGCCGTATTAAGACCACTCATGCTCGTGCAAAGGCTGTT
AGGAAGACGGCTGATCATATGATTACCTTGGCTAAGAATGGATCTTTGCA
TGCTAGACGACAGGCGTTGGGATATATATACGATAAGCAGTTGGTTCATG
CTCTGTTTGACCAGGTGCCGGAGAGGTATGGTGATCGGAATGGCGGTTAC
ACCCGTGTTCTGCGCACTATGCCTAGAAGGGGTGATAATGCTCCCATGGG
TATAATTGAGCTTGTTTAG
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