Ggra1652.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1652.t1
Unique NameGgra1652.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:273272..273787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4513.MLOC_73981.2
Max annot lvl35493|Streptophyta
Evalue9.24e-14
EggNOG OGs2AU57@1|root,2RZTB@2759|Eukaryota,37UKK@33090|Viridiplantae,3GIPX@35493|Streptophyta,3M0MR@4447|Liliopsida,3IHSC@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1652Ggra1652Gracilaria gracilis GNS1m malegenetig00000050_pilon 273272..273787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1652.t1.start1Ggra1652.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 273272..273274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1652.t1.CDS1Ggra1652.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 273272..273787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1652.t1.exon1Ggra1652.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 273272..273787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1652.t1.stop1Ggra1652.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 273785..273787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1652.t1Ggra1652.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 273272..273787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1652.t1 ID=Ggra1652.t1|Name=Ggra1652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=172bp
MVSGEREMDSELSGASGLKQWREGEVVAFNVLTAPPSNAPPKWGVAQSSC
NATQRASRPVRIVGAKRKAVRMCDEVQQCARCGKRFVKSENKAGSCLFHG
DILGNVMLLTMYEDHHFDDAALDNVKGPRYGRRWACCQDTDADAPPCKSG
LHVTYDCGAARWAEGIDFAVK*
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spliced messenger RNA

>Ggra1652.t1 ID=Ggra1652.t1|Name=Ggra1652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp|location=Sequence derived from alignment at tig00000050_pilon:273272..273787+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCTGGTGAGAGGGAAATGGATTCGGAGTTGTCGGGGGCATCAGG
TTTGAAACAATGGAGGGAAGGGGAAGTTGTGGCATTCAATGTGTTGACGG
CGCCGCCATCTAATGCGCCGCCGAAATGGGGCGTAGCACAAAGCAGCTGC
AACGCAACACAGCGAGCAAGTCGACCCGTGCGCATAGTTGGTGCTAAGCG
CAAAGCTGTGCGAATGTGTGACGAAGTGCAACAGTGCGCTCGATGTGGTA
AAAGGTTCGTGAAATCGGAGAACAAAGCAGGAAGCTGTTTGTTCCATGGC
GACATCCTGGGGAACGTGATGCTGCTCACGATGTATGAGGACCATCACTT
TGATGATGCGGCGTTGGACAATGTGAAGGGACCGCGCTACGGGAGACGCT
GGGCGTGCTGTCAAGACACGGATGCGGACGCGCCGCCTTGCAAGAGCGGA
CTTCACGTCACTTACGACTGCGGCGCGGCGCGGTGGGCTGAAGGCATCGA
CTTTGCGGTCAAGTGA
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protein sequence of Ggra1652.t1

>Ggra1652.t1 ID=Ggra1652.t1|Name=Ggra1652.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=172bp
MVSGEREMDSELSGASGLKQWREGEVVAFNVLTAPPSNAPPKWGVAQSSC
NATQRASRPVRIVGAKRKAVRMCDEVQQCARCGKRFVKSENKAGSCLFHG
DILGNVMLLTMYEDHHFDDAALDNVKGPRYGRRWACCQDTDADAPPCKSG
LHVTYDCGAARWAEGIDFAVK*
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mRNA from alignment at tig00000050_pilon:273272..273787+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1652.t1 ID=Ggra1652.t1|Name=Ggra1652.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp|location=Sequence derived from alignment at tig00000050_pilon:273272..273787+ (Gracilaria gracilis GNS1m male)
ATGGTGTCTGGTGAGAGGGAAATGGATTCGGAGTTGTCGGGGGCATCAGG
TTTGAAACAATGGAGGGAAGGGGAAGTTGTGGCATTCAATGTGTTGACGG
CGCCGCCATCTAATGCGCCGCCGAAATGGGGCGTAGCACAAAGCAGCTGC
AACGCAACACAGCGAGCAAGTCGACCCGTGCGCATAGTTGGTGCTAAGCG
CAAAGCTGTGCGAATGTGTGACGAAGTGCAACAGTGCGCTCGATGTGGTA
AAAGGTTCGTGAAATCGGAGAACAAAGCAGGAAGCTGTTTGTTCCATGGC
GACATCCTGGGGAACGTGATGCTGCTCACGATGTATGAGGACCATCACTT
TGATGATGCGGCGTTGGACAATGTGAAGGGACCGCGCTACGGGAGACGCT
GGGCGTGCTGTCAAGACACGGATGCGGACGCGCCGCCTTGCAAGAGCGGA
CTTCACGTCACTTACGACTGCGGCGCGGCGCGGTGGGCTGAAGGCATCGA
CTTTGCGGTCAAGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:273272..273787+

>Ggra1652.t1 ID=Ggra1652.t1|Name=Ggra1652.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=516bp|location=Sequence derived from alignment at tig00000050_pilon:273272..273787+ (Gracilaria gracilis GNS1m male)
ATGGTGTCTGGTGAGAGGGAAATGGATTCGGAGTTGTCGGGGGCATCAGG
TTTGAAACAATGGAGGGAAGGGGAAGTTGTGGCATTCAATGTGTTGACGG
CGCCGCCATCTAATGCGCCGCCGAAATGGGGCGTAGCACAAAGCAGCTGC
AACGCAACACAGCGAGCAAGTCGACCCGTGCGCATAGTTGGTGCTAAGCG
CAAAGCTGTGCGAATGTGTGACGAAGTGCAACAGTGCGCTCGATGTGGTA
AAAGGTTCGTGAAATCGGAGAACAAAGCAGGAAGCTGTTTGTTCCATGGC
GACATCCTGGGGAACGTGATGCTGCTCACGATGTATGAGGACCATCACTT
TGATGATGCGGCGTTGGACAATGTGAAGGGACCGCGCTACGGGAGACGCT
GGGCGTGCTGTCAAGACACGGATGCGGACGCGCCGCCTTGCAAGAGCGGA
CTTCACGTCACTTACGACTGCGGCGCGGCGCGGTGGGCTGAAGGCATCGA
CTTTGCGGTCAAGTGA
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