Ggra165.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra165.t1
Unique NameGgra165.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000940_piloncontigtig00000940_pilon:75980..77325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD35416
PFAMsAOX
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K17893
KEGG ReactionR09504
Evalue1.85e-79
EggNOG OGs2CMS2@1|root,2QRMM@2759|Eukaryota
EC1.10.3.11
Descriptionubiquinol:oxygen oxidoreductase activity
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra165Ggra165Gracilaria gracilis GNS1m malegenetig00000940_pilon 75980..77325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1Ggra165.t1Gracilaria gracilis GNS1m malepolypeptidetig00000940_pilon 75980..77325 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1.stop1Ggra165.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000940_pilon 75980..75982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1.CDS1Ggra165.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000940_pilon 75980..76439 -
Ggra165.t1.CDS2Ggra165.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000940_pilon 76510..76550 -
Ggra165.t1.CDS3Ggra165.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000940_pilon 76642..77325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1.exon1Ggra165.t1.exon1Gracilaria gracilis GNS1m maleexontig00000940_pilon 75980..76439 -
Ggra165.t1.exon2Ggra165.t1.exon2Gracilaria gracilis GNS1m maleexontig00000940_pilon 76510..76550 -
Ggra165.t1.exon3Ggra165.t1.exon3Gracilaria gracilis GNS1m maleexontig00000940_pilon 76642..77325 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1.intron1Ggra165.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000940_pilon 76440..76509 -
Ggra165.t1.intron2Ggra165.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000940_pilon 76551..76641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra165.t1.start1Ggra165.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000940_pilon 77323..77325 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra165.t1 ID=Ggra165.t1|Name=Ggra165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp
MFGFVAAPLPSSRRLCSWPRSVSRSSAGRARKIHVARAVLADESKPSPSD
VEASSLPAEQLEAYYVSEDSSYQPLLTSAGRLALKNFGVELSELRISIAR
SVGLLPPQQYTPPDCLNLSLDDAAVIEREREREQENGPVDASPFVNFVYD
VTCRLLDIVFKDRPIPRFWFLETVARMPYFAYSSCLHLFSTLGWYRSPTL
MNVHHAEELNEAYHLAVMESLGGDRRWFDRFLAFHVSLAYYWFLVFLFMI
SPTQSYRFSEKLEGHAVDTYGQFLEENESRLRELPVPDVAHEYFHNFLYY
FQEFQMTPDRHQSNTQRRSPKLESLYDVFENIFRDEKEHCGTMDACSDYI
ENGSTFWFNGKSVSGSSRKAKIMPIEKRQEFWRRWEEIHTKNKE*
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spliced messenger RNA

>Ggra165.t1 ID=Ggra165.t1|Name=Ggra165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000940_pilon:75980..77325- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGCTTCGTTGCGGCCCCGCTCCCGTCGTCAAGGCGCCTGTGTTC
GTGGCCGCGCTCAGTTTCCAGGAGCTCTGCGGGCCGTGCTCGCAAGATTC
ATGTGGCGCGCGCGGTGCTCGCGGACGAATCCAAACCGTCGCCAAGTGAT
GTGGAGGCCTCCTCACTTCCCGCAGAGCAACTCGAAGCGTACTATGTGTC
CGAGGACTCCTCGTACCAGCCTTTACTCACATCCGCTGGGCGTCTCGCGC
TGAAGAACTTCGGTGTCGAGCTGTCTGAGCTTCGCATATCAATTGCCCGC
AGCGTGGGGCTTTTGCCACCGCAGCAGTACACCCCCCCCGACTGCCTCAA
TCTTTCGTTGGATGACGCGGCCGTCATTGAGCGGGAACGCGAACGTGAGC
AAGAAAACGGCCCTGTTGACGCCTCGCCGTTTGTGAACTTCGTCTATGAT
GTTACTTGCCGATTGTTGGACATCGTGTTTAAAGACAGGCCGATACCACG
CTTCTGGTTTCTAGAAACTGTAGCAAGAATGCCCTACTTTGCATACTCTA
GCTGCTTGCATCTGTTTTCTACCCTGGGCTGGTACCGCTCGCCTACGTTG
ATGAACGTTCATCATGCGGAAGAGCTGAATGAAGCATATCACCTAGCTGT
GATGGAGAGTCTGGGAGGAGACCGACGCTGGTTTGACCGATTTCTCGCCT
TCCACGTCAGTCTTGCGTACTACTGGTTCCTCGTCTTTTTGTTTATGATC
TCGCCCACCCAGTCCTACCGTTTTTCGGAAAAGCTGGAGGGACATGCTGT
AGACACATATGGGCAGTTCCTCGAAGAAAACGAGAGCAGGTTGCGCGAAC
TGCCGGTGCCAGATGTGGCTCACGAGTACTTCCACAACTTCTTGTACTAC
TTTCAGGAGTTCCAAATGACACCAGACCGCCATCAAAGCAACACGCAGCG
AAGATCACCGAAGCTTGAATCGCTGTATGATGTGTTTGAAAACATCTTTC
GTGATGAAAAGGAGCACTGCGGGACGATGGATGCGTGCTCGGACTACATT
GAAAACGGTTCTACGTTTTGGTTCAACGGCAAGAGTGTGTCCGGTAGCTC
AAGAAAGGCCAAAATTATGCCGATCGAGAAGCGGCAGGAGTTCTGGCGAC
GATGGGAAGAGATTCACACCAAGAACAAAGAGTAG
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protein sequence of Ggra165.t1

>Ggra165.t1 ID=Ggra165.t1|Name=Ggra165.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=395bp
MFGFVAAPLPSSRRLCSWPRSVSRSSAGRARKIHVARAVLADESKPSPSD
VEASSLPAEQLEAYYVSEDSSYQPLLTSAGRLALKNFGVELSELRISIAR
SVGLLPPQQYTPPDCLNLSLDDAAVIEREREREQENGPVDASPFVNFVYD
VTCRLLDIVFKDRPIPRFWFLETVARMPYFAYSSCLHLFSTLGWYRSPTL
MNVHHAEELNEAYHLAVMESLGGDRRWFDRFLAFHVSLAYYWFLVFLFMI
SPTQSYRFSEKLEGHAVDTYGQFLEENESRLRELPVPDVAHEYFHNFLYY
FQEFQMTPDRHQSNTQRRSPKLESLYDVFENIFRDEKEHCGTMDACSDYI
ENGSTFWFNGKSVSGSSRKAKIMPIEKRQEFWRRWEEIHTKNKE*
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mRNA from alignment at tig00000940_pilon:75980..77325-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra165.t1 ID=Ggra165.t1|Name=Ggra165.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1346bp|location=Sequence derived from alignment at tig00000940_pilon:75980..77325- (Gracilaria gracilis GNS1m male)
ATGTTCGGCTTCGTTGCGGCCCCGCTCCCGTCGTCAAGGCGCCTGTGTTC
GTGGCCGCGCTCAGTTTCCAGGAGCTCTGCGGGCCGTGCTCGCAAGATTC
ATGTGGCGCGCGCGGTGCTCGCGGACGAATCCAAACCGTCGCCAAGTGAT
GTGGAGGCCTCCTCACTTCCCGCAGAGCAACTCGAAGCGTACTATGTGTC
CGAGGACTCCTCGTACCAGCCTTTACTCACATCCGCTGGGCGTCTCGCGC
TGAAGAACTTCGGTGTCGAGCTGTCTGAGCTTCGCATATCAATTGCCCGC
AGCGTGGGGCTTTTGCCACCGCAGCAGTACACCCCCCCCGACTGCCTCAA
TCTTTCGTTGGATGACGCGGCCGTCATTGAGCGGGAACGCGAACGTGAGC
AAGAAAACGGCCCTGTTGACGCCTCGCCGTTTGTGAACTTCGTCTATGAT
GTTACTTGCCGATTGTTGGACATCGTGTTTAAAGACAGGCCGATACCACG
CTTCTGGTTTCTAGAAACTGTAGCAAGAATGCCCTACTTTGCATACTCTA
GCTGCTTGCATCTGTTTTCTACCCTGGGCTGGTACCGCTCGCCTACGTTG
ATGAACGTTCATCATGCGGAAGAGCTGAATGAAGCATATCACCTAGCTGT
GATGGAGAGTCTGGGAGGAGACCGACGCTGGTTTGTATGTTCTTTTTCTT
GTCTGTCGTTGTTCATGGTGCCGATCTCATGATTAACAATTCCTGTTCTC
GCTTACTACTTGCGCGCGCGCCCAGGACCGATTTCTCGCCTTCCACGTCA
GTCTTGCGTACTACTGGTAGGTGCACGCACACGACGATCAAGTGATGTGA
AGCTTGTGATCTGTTACTGACTGACATGGTGCTCAGGTTCCTCGTCTTTT
TGTTTATGATCTCGCCCACCCAGTCCTACCGTTTTTCGGAAAAGCTGGAG
GGACATGCTGTAGACACATATGGGCAGTTCCTCGAAGAAAACGAGAGCAG
GTTGCGCGAACTGCCGGTGCCAGATGTGGCTCACGAGTACTTCCACAACT
TCTTGTACTACTTTCAGGAGTTCCAAATGACACCAGACCGCCATCAAAGC
AACACGCAGCGAAGATCACCGAAGCTTGAATCGCTGTATGATGTGTTTGA
AAACATCTTTCGTGATGAAAAGGAGCACTGCGGGACGATGGATGCGTGCT
CGGACTACATTGAAAACGGTTCTACGTTTTGGTTCAACGGCAAGAGTGTG
TCCGGTAGCTCAAGAAAGGCCAAAATTATGCCGATCGAGAAGCGGCAGGA
GTTCTGGCGACGATGGGAAGAGATTCACACCAAGAACAAAGAGTAG
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Coding sequence (CDS) from alignment at tig00000940_pilon:75980..77325-

>Ggra165.t1 ID=Ggra165.t1|Name=Ggra165.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1185bp|location=Sequence derived from alignment at tig00000940_pilon:75980..77325- (Gracilaria gracilis GNS1m male)
ATGTTCGGCTTCGTTGCGGCCCCGCTCCCGTCGTCAAGGCGCCTGTGTTC
GTGGCCGCGCTCAGTTTCCAGGAGCTCTGCGGGCCGTGCTCGCAAGATTC
ATGTGGCGCGCGCGGTGCTCGCGGACGAATCCAAACCGTCGCCAAGTGAT
GTGGAGGCCTCCTCACTTCCCGCAGAGCAACTCGAAGCGTACTATGTGTC
CGAGGACTCCTCGTACCAGCCTTTACTCACATCCGCTGGGCGTCTCGCGC
TGAAGAACTTCGGTGTCGAGCTGTCTGAGCTTCGCATATCAATTGCCCGC
AGCGTGGGGCTTTTGCCACCGCAGCAGTACACCCCCCCCGACTGCCTCAA
TCTTTCGTTGGATGACGCGGCCGTCATTGAGCGGGAACGCGAACGTGAGC
AAGAAAACGGCCCTGTTGACGCCTCGCCGTTTGTGAACTTCGTCTATGAT
GTTACTTGCCGATTGTTGGACATCGTGTTTAAAGACAGGCCGATACCACG
CTTCTGGTTTCTAGAAACTGTAGCAAGAATGCCCTACTTTGCATACTCTA
GCTGCTTGCATCTGTTTTCTACCCTGGGCTGGTACCGCTCGCCTACGTTG
ATGAACGTTCATCATGCGGAAGAGCTGAATGAAGCATATCACCTAGCTGT
GATGGAGAGTCTGGGAGGAGACCGACGCTGGTTTGACCGATTTCTCGCCT
TCCACGTCAGTCTTGCGTACTACTGGTTCCTCGTCTTTTTGTTTATGATC
TCGCCCACCCAGTCCTACCGTTTTTCGGAAAAGCTGGAGGGACATGCTGT
AGACACATATGGGCAGTTCCTCGAAGAAAACGAGAGCAGGTTGCGCGAAC
TGCCGGTGCCAGATGTGGCTCACGAGTACTTCCACAACTTCTTGTACTAC
TTTCAGGAGTTCCAAATGACACCAGACCGCCATCAAAGCAACACGCAGCG
AAGATCACCGAAGCTTGAATCGCTGTATGATGTGTTTGAAAACATCTTTC
GTGATGAAAAGGAGCACTGCGGGACGATGGATGCGTGCTCGGACTACATT
GAAAACGGTTCTACGTTTTGGTTCAACGGCAAGAGTGTGTCCGGTAGCTC
AAGAAAGGCCAAAATTATGCCGATCGAGAAGCGGCAGGAGTTCTGGCGAC
GATGGGAAGAGATTCACACCAAGAACAAAGAGTAG
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