Ggra1649.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1649.t1
Unique NameGgra1649.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:261705..263042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003285648.1
PFAMsThioredoxin,Thioredoxin_6
Max annot lvl554915|Amoebozoa
KEGG koko:K09584
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006457,GO:0006950,GO:0008150,GO:0009987,GO:0012505,GO:0016853,GO:0016860,GO:0016864,GO:0033554,GO:0034976,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0140096
Evalue8.67e-46
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota,3X8VC@554915|Amoebozoa
EC5.3.4.1
DescriptionProtein disulfide isomerase
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1649Ggra1649Gracilaria gracilis GNS1m malegenetig00000050_pilon 261705..263042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1649.t1.stop1Ggra1649.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 261705..261707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1649.t1.CDS1Ggra1649.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 261705..263042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1649.t1.exon1Ggra1649.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 261705..263042 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1649.t1.start1Ggra1649.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 263040..263042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1649.t1Ggra1649.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 261705..263042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1649.t1 ID=Ggra1649.t1|Name=Ggra1649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=446bp
MTKLHFIFFLLLASISVARAGMYGEYVTELTPSNFDDLVIKSTDTWLVKF
YAPWCGHCQQSAPAFSKAAKKLHGVARLGVVNCDEHKEIAQRFSISGFPT
IKVFKGEGKKARRPTDYNQARSSSAFVDHVKHVMPSFVARVKPTGVEAFF
NDLPKLPHVLLFTDKKSTSPLYKGLSARFKGRLSFGEVRKSEAKKVPEQY
SVHSYPTLLAFTAGESEPTSARTFEGKMDPDSLMDFFEKVAGRQMNSTGS
VAESGEAKTSESERVFAQPKAYSGEVHTIVGRKQFEEYCDARKDGRLCVL
SVLKGGESHALFGELGDVAERYQYDNMAFSVIDAAVEGAREYAKIFGIPE
EEDGVVVMRARKRKYTKLAGAVGSKEISTFLDRIVGGDAHWSKLKSDLPE
WEAPDQSSQEKDGKGEDAGADEETEQCGTEPPKDGGHCSAPKDDL*
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spliced messenger RNA

>Ggra1649.t1 ID=Ggra1649.t1|Name=Ggra1649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00000050_pilon:261705..263042- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAACTACACTTCATATTCTTCTTACTGCTAGCGTCGATCTCCGT
TGCCCGCGCAGGAATGTACGGCGAGTATGTTACCGAGCTAACCCCGTCAA
ACTTTGATGATCTTGTGATAAAATCCACGGACACCTGGCTCGTGAAGTTC
TATGCTCCGTGGTGTGGACATTGCCAACAGTCAGCCCCAGCCTTCTCAAA
AGCGGCCAAGAAGCTGCACGGCGTAGCGCGACTTGGCGTCGTCAACTGCG
ACGAACATAAGGAGATTGCTCAGCGTTTCTCCATTAGCGGCTTCCCCACT
ATCAAGGTCTTTAAGGGTGAGGGTAAGAAGGCGCGCAGGCCGACAGATTA
CAATCAAGCACGTTCTTCATCCGCATTTGTTGATCATGTCAAGCATGTTA
TGCCGAGTTTTGTCGCGAGGGTGAAGCCGACTGGTGTGGAGGCGTTTTTC
AATGATCTACCAAAACTTCCTCATGTTTTACTATTCACAGATAAGAAATC
CACTTCCCCTCTTTACAAGGGACTCTCGGCCAGATTCAAAGGCCGTCTGT
CTTTCGGCGAGGTTCGTAAATCGGAAGCAAAGAAAGTTCCGGAACAGTAT
TCGGTCCATTCTTATCCTACTCTGCTTGCGTTTACCGCCGGAGAGAGTGA
GCCCACATCGGCGCGTACGTTCGAGGGCAAGATGGATCCCGACTCTCTCA
TGGACTTTTTCGAGAAGGTGGCTGGCCGCCAAATGAATTCGACAGGCTCT
GTTGCCGAAAGTGGCGAAGCCAAAACTAGTGAGTCGGAGCGTGTCTTTGC
TCAACCGAAAGCTTATTCTGGAGAAGTGCATACCATCGTGGGACGGAAGC
AGTTTGAAGAATATTGCGATGCGAGAAAGGATGGACGATTGTGCGTATTG
TCCGTCTTGAAAGGCGGTGAATCACATGCTCTCTTTGGGGAATTAGGAGA
TGTTGCGGAGAGATATCAATACGACAACATGGCATTCTCAGTGATCGATG
CAGCTGTGGAAGGCGCTCGTGAGTATGCGAAGATCTTTGGGATTCCCGAA
GAGGAAGATGGAGTGGTGGTTATGCGAGCAAGGAAGCGCAAGTACACAAA
GCTCGCGGGAGCTGTTGGTTCCAAAGAAATCAGTACATTTTTGGATCGGA
TTGTAGGAGGAGATGCGCACTGGAGCAAACTGAAGAGTGACCTACCAGAA
TGGGAAGCTCCGGATCAAAGTTCACAGGAGAAAGACGGCAAGGGTGAAGA
TGCAGGAGCAGATGAAGAGACTGAACAGTGTGGCACAGAACCACCAAAAG
ATGGCGGGCATTGCAGCGCGCCGAAGGATGACCTTTAG
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protein sequence of Ggra1649.t1

>Ggra1649.t1 ID=Ggra1649.t1|Name=Ggra1649.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=446bp
MTKLHFIFFLLLASISVARAGMYGEYVTELTPSNFDDLVIKSTDTWLVKF
YAPWCGHCQQSAPAFSKAAKKLHGVARLGVVNCDEHKEIAQRFSISGFPT
IKVFKGEGKKARRPTDYNQARSSSAFVDHVKHVMPSFVARVKPTGVEAFF
NDLPKLPHVLLFTDKKSTSPLYKGLSARFKGRLSFGEVRKSEAKKVPEQY
SVHSYPTLLAFTAGESEPTSARTFEGKMDPDSLMDFFEKVAGRQMNSTGS
VAESGEAKTSESERVFAQPKAYSGEVHTIVGRKQFEEYCDARKDGRLCVL
SVLKGGESHALFGELGDVAERYQYDNMAFSVIDAAVEGAREYAKIFGIPE
EEDGVVVMRARKRKYTKLAGAVGSKEISTFLDRIVGGDAHWSKLKSDLPE
WEAPDQSSQEKDGKGEDAGADEETEQCGTEPPKDGGHCSAPKDDL*
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mRNA from alignment at tig00000050_pilon:261705..263042-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1649.t1 ID=Ggra1649.t1|Name=Ggra1649.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at tig00000050_pilon:261705..263042- (Gracilaria gracilis GNS1m male)
ATGACGAAACTACACTTCATATTCTTCTTACTGCTAGCGTCGATCTCCGT
TGCCCGCGCAGGAATGTACGGCGAGTATGTTACCGAGCTAACCCCGTCAA
ACTTTGATGATCTTGTGATAAAATCCACGGACACCTGGCTCGTGAAGTTC
TATGCTCCGTGGTGTGGACATTGCCAACAGTCAGCCCCAGCCTTCTCAAA
AGCGGCCAAGAAGCTGCACGGCGTAGCGCGACTTGGCGTCGTCAACTGCG
ACGAACATAAGGAGATTGCTCAGCGTTTCTCCATTAGCGGCTTCCCCACT
ATCAAGGTCTTTAAGGGTGAGGGTAAGAAGGCGCGCAGGCCGACAGATTA
CAATCAAGCACGTTCTTCATCCGCATTTGTTGATCATGTCAAGCATGTTA
TGCCGAGTTTTGTCGCGAGGGTGAAGCCGACTGGTGTGGAGGCGTTTTTC
AATGATCTACCAAAACTTCCTCATGTTTTACTATTCACAGATAAGAAATC
CACTTCCCCTCTTTACAAGGGACTCTCGGCCAGATTCAAAGGCCGTCTGT
CTTTCGGCGAGGTTCGTAAATCGGAAGCAAAGAAAGTTCCGGAACAGTAT
TCGGTCCATTCTTATCCTACTCTGCTTGCGTTTACCGCCGGAGAGAGTGA
GCCCACATCGGCGCGTACGTTCGAGGGCAAGATGGATCCCGACTCTCTCA
TGGACTTTTTCGAGAAGGTGGCTGGCCGCCAAATGAATTCGACAGGCTCT
GTTGCCGAAAGTGGCGAAGCCAAAACTAGTGAGTCGGAGCGTGTCTTTGC
TCAACCGAAAGCTTATTCTGGAGAAGTGCATACCATCGTGGGACGGAAGC
AGTTTGAAGAATATTGCGATGCGAGAAAGGATGGACGATTGTGCGTATTG
TCCGTCTTGAAAGGCGGTGAATCACATGCTCTCTTTGGGGAATTAGGAGA
TGTTGCGGAGAGATATCAATACGACAACATGGCATTCTCAGTGATCGATG
CAGCTGTGGAAGGCGCTCGTGAGTATGCGAAGATCTTTGGGATTCCCGAA
GAGGAAGATGGAGTGGTGGTTATGCGAGCAAGGAAGCGCAAGTACACAAA
GCTCGCGGGAGCTGTTGGTTCCAAAGAAATCAGTACATTTTTGGATCGGA
TTGTAGGAGGAGATGCGCACTGGAGCAAACTGAAGAGTGACCTACCAGAA
TGGGAAGCTCCGGATCAAAGTTCACAGGAGAAAGACGGCAAGGGTGAAGA
TGCAGGAGCAGATGAAGAGACTGAACAGTGTGGCACAGAACCACCAAAAG
ATGGCGGGCATTGCAGCGCGCCGAAGGATGACCTTTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:261705..263042-

>Ggra1649.t1 ID=Ggra1649.t1|Name=Ggra1649.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1338bp|location=Sequence derived from alignment at tig00000050_pilon:261705..263042- (Gracilaria gracilis GNS1m male)
ATGACGAAACTACACTTCATATTCTTCTTACTGCTAGCGTCGATCTCCGT
TGCCCGCGCAGGAATGTACGGCGAGTATGTTACCGAGCTAACCCCGTCAA
ACTTTGATGATCTTGTGATAAAATCCACGGACACCTGGCTCGTGAAGTTC
TATGCTCCGTGGTGTGGACATTGCCAACAGTCAGCCCCAGCCTTCTCAAA
AGCGGCCAAGAAGCTGCACGGCGTAGCGCGACTTGGCGTCGTCAACTGCG
ACGAACATAAGGAGATTGCTCAGCGTTTCTCCATTAGCGGCTTCCCCACT
ATCAAGGTCTTTAAGGGTGAGGGTAAGAAGGCGCGCAGGCCGACAGATTA
CAATCAAGCACGTTCTTCATCCGCATTTGTTGATCATGTCAAGCATGTTA
TGCCGAGTTTTGTCGCGAGGGTGAAGCCGACTGGTGTGGAGGCGTTTTTC
AATGATCTACCAAAACTTCCTCATGTTTTACTATTCACAGATAAGAAATC
CACTTCCCCTCTTTACAAGGGACTCTCGGCCAGATTCAAAGGCCGTCTGT
CTTTCGGCGAGGTTCGTAAATCGGAAGCAAAGAAAGTTCCGGAACAGTAT
TCGGTCCATTCTTATCCTACTCTGCTTGCGTTTACCGCCGGAGAGAGTGA
GCCCACATCGGCGCGTACGTTCGAGGGCAAGATGGATCCCGACTCTCTCA
TGGACTTTTTCGAGAAGGTGGCTGGCCGCCAAATGAATTCGACAGGCTCT
GTTGCCGAAAGTGGCGAAGCCAAAACTAGTGAGTCGGAGCGTGTCTTTGC
TCAACCGAAAGCTTATTCTGGAGAAGTGCATACCATCGTGGGACGGAAGC
AGTTTGAAGAATATTGCGATGCGAGAAAGGATGGACGATTGTGCGTATTG
TCCGTCTTGAAAGGCGGTGAATCACATGCTCTCTTTGGGGAATTAGGAGA
TGTTGCGGAGAGATATCAATACGACAACATGGCATTCTCAGTGATCGATG
CAGCTGTGGAAGGCGCTCGTGAGTATGCGAAGATCTTTGGGATTCCCGAA
GAGGAAGATGGAGTGGTGGTTATGCGAGCAAGGAAGCGCAAGTACACAAA
GCTCGCGGGAGCTGTTGGTTCCAAAGAAATCAGTACATTTTTGGATCGGA
TTGTAGGAGGAGATGCGCACTGGAGCAAACTGAAGAGTGACCTACCAGAA
TGGGAAGCTCCGGATCAAAGTTCACAGGAGAAAGACGGCAAGGGTGAAGA
TGCAGGAGCAGATGAAGAGACTGAACAGTGTGGCACAGAACCACCAAAAG
ATGGCGGGCATTGCAGCGCGCCGAAGGATGACCTTTAG
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