Ggra1647.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1647.t1
Unique NameGgra1647.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:257870..259186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS052CT
Preferred namePCYT2
PFAMsCTP_transf_like
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00967,ko:K01530
KEGG ReactionR02038,R04247
KEGG Pathwayko00440,ko00564,ko01100,map00440,map00564,map01100
KEGG ModuleM00092
GOsGO:0003674,GO:0003824,GO:0004306,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032592,GO:0034641,GO:0042175,GO:0042439,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046337,GO:0046474,GO:0046486,GO:0070567,GO:0071704,GO:0090407,GO:0098573,GO:0098588,GO:0098805,GO:0098827,GO:1901564,GO:1901576,GO:1901615
Evalue1.03e-144
EggNOG OGsCOG0615@1|root,KOG2803@2759|Eukaryota
EC2.7.7.14,3.6.3.1
Descriptioncytidylyltransferase
COG categoryIM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1647Ggra1647Gracilaria gracilis GNS1m malegenetig00000050_pilon 257870..259186 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1647.t1.start1Ggra1647.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 257870..257872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1647.t1.CDS1Ggra1647.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 257870..259186 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1647.t1.exon1Ggra1647.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 257870..259186 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1647.t1.stop1Ggra1647.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 259184..259186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1647.t1Ggra1647.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 257870..259186 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1647.t1 ID=Ggra1647.t1|Name=Ggra1647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MSDSVTDLSKLFYLVEVAFFARTVYDFTRTYFTYKLRSSDPVLALEKPLP
NPRPRITAVPTTAHHKKNAPVRVYMDGCFDGMHFGHANALRQAKALGDVL
VVGINPEHEIRKHKGPPIMSDEERRIAVSSVKWVDEVLTDVPYVVTPEFL
ARLIEEHKIDIIVHGDDPCIGADGQDVYKAVKNMGRFTTVKRTEGVSSTD
IVGRMLLCTRSHHLDVHHSPTGITRLPEATTSDDEKALQSKKPFTRYSSF
LPTTRRLIQFAGEPRAPKPGDRVVYCDGTFDMFHAGHIETLRQAKEMGDF
LLVGIHDDATVNERKGSNFPIMNVHERTLAVLSCRYVDEVIIGAPWCITE
DMLKTMNISKVVHGRHRRDSKEVSTLDPYEVPRKLGLLAQVQGERDLSVE
TILERIVRNREAFVKRNIKKEAAEDEYLTKHKKYVEER*
back to top

spliced messenger RNA

>Ggra1647.t1 ID=Ggra1647.t1|Name=Ggra1647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000050_pilon:257870..259186+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGACTCTGTCACCGATCTCAGCAAGTTGTTTTACCTCGTGGAGGT
GGCCTTCTTTGCGCGCACCGTCTATGATTTCACAAGGACGTATTTCACGT
ACAAGCTGCGCTCTTCCGACCCCGTTCTGGCCCTGGAGAAGCCCCTCCCC
AATCCGCGTCCCCGCATTACCGCCGTTCCCACCACTGCCCATCACAAAAA
GAATGCCCCGGTGCGAGTCTACATGGACGGCTGTTTCGATGGTATGCATT
TCGGTCATGCAAATGCATTACGTCAAGCAAAGGCGCTCGGAGATGTTCTT
GTCGTCGGCATCAATCCGGAACATGAGATTCGTAAGCACAAGGGGCCTCC
CATCATGAGTGACGAAGAACGTCGCATTGCTGTTTCCAGTGTCAAGTGGG
TCGACGAGGTCCTCACCGACGTGCCGTATGTTGTCACTCCTGAGTTTCTT
GCAAGACTAATTGAGGAACATAAGATCGACATCATTGTCCATGGCGACGA
TCCGTGCATCGGTGCTGACGGTCAAGATGTGTACAAGGCTGTCAAGAACA
TGGGTCGATTCACAACTGTCAAGCGTACCGAGGGAGTCAGTTCCACGGAT
ATTGTCGGTCGAATGTTGCTCTGTACAAGGAGCCACCATCTTGACGTACA
TCACTCCCCAACCGGCATAACACGTTTACCCGAAGCCACCACTTCCGATG
ATGAGAAGGCGCTCCAAAGCAAAAAACCATTCACCAGATATAGCAGCTTT
CTTCCCACTACACGTCGTCTCATTCAATTTGCTGGTGAGCCTCGAGCGCC
GAAACCGGGTGACAGGGTTGTGTATTGTGACGGAACATTTGATATGTTTC
ATGCCGGTCACATTGAGACTTTGCGCCAAGCTAAGGAAATGGGCGACTTT
TTGCTTGTCGGCATTCACGATGATGCTACTGTGAATGAGCGTAAGGGAAG
CAATTTCCCGATCATGAACGTTCATGAGCGAACGCTGGCTGTGTTGAGTT
GTCGTTATGTAGATGAGGTTATTATTGGCGCTCCTTGGTGTATCACGGAG
GACATGTTAAAGACAATGAATATCTCAAAGGTTGTCCATGGACGCCATCG
GCGGGATAGCAAGGAAGTGAGCACATTGGATCCTTACGAAGTTCCTCGTA
AATTGGGCTTGCTGGCCCAGGTTCAGGGCGAAAGGGATCTATCGGTGGAA
ACCATATTGGAGCGAATTGTGAGGAATAGAGAGGCGTTTGTCAAGCGCAA
TATCAAGAAGGAAGCAGCAGAAGATGAATACCTTACGAAACATAAGAAGT
ATGTCGAGGAACGTTGA
back to top

protein sequence of Ggra1647.t1

>Ggra1647.t1 ID=Ggra1647.t1|Name=Ggra1647.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MSDSVTDLSKLFYLVEVAFFARTVYDFTRTYFTYKLRSSDPVLALEKPLP
NPRPRITAVPTTAHHKKNAPVRVYMDGCFDGMHFGHANALRQAKALGDVL
VVGINPEHEIRKHKGPPIMSDEERRIAVSSVKWVDEVLTDVPYVVTPEFL
ARLIEEHKIDIIVHGDDPCIGADGQDVYKAVKNMGRFTTVKRTEGVSSTD
IVGRMLLCTRSHHLDVHHSPTGITRLPEATTSDDEKALQSKKPFTRYSSF
LPTTRRLIQFAGEPRAPKPGDRVVYCDGTFDMFHAGHIETLRQAKEMGDF
LLVGIHDDATVNERKGSNFPIMNVHERTLAVLSCRYVDEVIIGAPWCITE
DMLKTMNISKVVHGRHRRDSKEVSTLDPYEVPRKLGLLAQVQGERDLSVE
TILERIVRNREAFVKRNIKKEAAEDEYLTKHKKYVEER*
back to top

mRNA from alignment at tig00000050_pilon:257870..259186+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1647.t1 ID=Ggra1647.t1|Name=Ggra1647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000050_pilon:257870..259186+ (Gracilaria gracilis GNS1m male)
ATGTCTGACTCTGTCACCGATCTCAGCAAGTTGTTTTACCTCGTGGAGGT
GGCCTTCTTTGCGCGCACCGTCTATGATTTCACAAGGACGTATTTCACGT
ACAAGCTGCGCTCTTCCGACCCCGTTCTGGCCCTGGAGAAGCCCCTCCCC
AATCCGCGTCCCCGCATTACCGCCGTTCCCACCACTGCCCATCACAAAAA
GAATGCCCCGGTGCGAGTCTACATGGACGGCTGTTTCGATGGTATGCATT
TCGGTCATGCAAATGCATTACGTCAAGCAAAGGCGCTCGGAGATGTTCTT
GTCGTCGGCATCAATCCGGAACATGAGATTCGTAAGCACAAGGGGCCTCC
CATCATGAGTGACGAAGAACGTCGCATTGCTGTTTCCAGTGTCAAGTGGG
TCGACGAGGTCCTCACCGACGTGCCGTATGTTGTCACTCCTGAGTTTCTT
GCAAGACTAATTGAGGAACATAAGATCGACATCATTGTCCATGGCGACGA
TCCGTGCATCGGTGCTGACGGTCAAGATGTGTACAAGGCTGTCAAGAACA
TGGGTCGATTCACAACTGTCAAGCGTACCGAGGGAGTCAGTTCCACGGAT
ATTGTCGGTCGAATGTTGCTCTGTACAAGGAGCCACCATCTTGACGTACA
TCACTCCCCAACCGGCATAACACGTTTACCCGAAGCCACCACTTCCGATG
ATGAGAAGGCGCTCCAAAGCAAAAAACCATTCACCAGATATAGCAGCTTT
CTTCCCACTACACGTCGTCTCATTCAATTTGCTGGTGAGCCTCGAGCGCC
GAAACCGGGTGACAGGGTTGTGTATTGTGACGGAACATTTGATATGTTTC
ATGCCGGTCACATTGAGACTTTGCGCCAAGCTAAGGAAATGGGCGACTTT
TTGCTTGTCGGCATTCACGATGATGCTACTGTGAATGAGCGTAAGGGAAG
CAATTTCCCGATCATGAACGTTCATGAGCGAACGCTGGCTGTGTTGAGTT
GTCGTTATGTAGATGAGGTTATTATTGGCGCTCCTTGGTGTATCACGGAG
GACATGTTAAAGACAATGAATATCTCAAAGGTTGTCCATGGACGCCATCG
GCGGGATAGCAAGGAAGTGAGCACATTGGATCCTTACGAAGTTCCTCGTA
AATTGGGCTTGCTGGCCCAGGTTCAGGGCGAAAGGGATCTATCGGTGGAA
ACCATATTGGAGCGAATTGTGAGGAATAGAGAGGCGTTTGTCAAGCGCAA
TATCAAGAAGGAAGCAGCAGAAGATGAATACCTTACGAAACATAAGAAGT
ATGTCGAGGAACGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:257870..259186+

>Ggra1647.t1 ID=Ggra1647.t1|Name=Ggra1647.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000050_pilon:257870..259186+ (Gracilaria gracilis GNS1m male)
ATGTCTGACTCTGTCACCGATCTCAGCAAGTTGTTTTACCTCGTGGAGGT
GGCCTTCTTTGCGCGCACCGTCTATGATTTCACAAGGACGTATTTCACGT
ACAAGCTGCGCTCTTCCGACCCCGTTCTGGCCCTGGAGAAGCCCCTCCCC
AATCCGCGTCCCCGCATTACCGCCGTTCCCACCACTGCCCATCACAAAAA
GAATGCCCCGGTGCGAGTCTACATGGACGGCTGTTTCGATGGTATGCATT
TCGGTCATGCAAATGCATTACGTCAAGCAAAGGCGCTCGGAGATGTTCTT
GTCGTCGGCATCAATCCGGAACATGAGATTCGTAAGCACAAGGGGCCTCC
CATCATGAGTGACGAAGAACGTCGCATTGCTGTTTCCAGTGTCAAGTGGG
TCGACGAGGTCCTCACCGACGTGCCGTATGTTGTCACTCCTGAGTTTCTT
GCAAGACTAATTGAGGAACATAAGATCGACATCATTGTCCATGGCGACGA
TCCGTGCATCGGTGCTGACGGTCAAGATGTGTACAAGGCTGTCAAGAACA
TGGGTCGATTCACAACTGTCAAGCGTACCGAGGGAGTCAGTTCCACGGAT
ATTGTCGGTCGAATGTTGCTCTGTACAAGGAGCCACCATCTTGACGTACA
TCACTCCCCAACCGGCATAACACGTTTACCCGAAGCCACCACTTCCGATG
ATGAGAAGGCGCTCCAAAGCAAAAAACCATTCACCAGATATAGCAGCTTT
CTTCCCACTACACGTCGTCTCATTCAATTTGCTGGTGAGCCTCGAGCGCC
GAAACCGGGTGACAGGGTTGTGTATTGTGACGGAACATTTGATATGTTTC
ATGCCGGTCACATTGAGACTTTGCGCCAAGCTAAGGAAATGGGCGACTTT
TTGCTTGTCGGCATTCACGATGATGCTACTGTGAATGAGCGTAAGGGAAG
CAATTTCCCGATCATGAACGTTCATGAGCGAACGCTGGCTGTGTTGAGTT
GTCGTTATGTAGATGAGGTTATTATTGGCGCTCCTTGGTGTATCACGGAG
GACATGTTAAAGACAATGAATATCTCAAAGGTTGTCCATGGACGCCATCG
GCGGGATAGCAAGGAAGTGAGCACATTGGATCCTTACGAAGTTCCTCGTA
AATTGGGCTTGCTGGCCCAGGTTCAGGGCGAAAGGGATCTATCGGTGGAA
ACCATATTGGAGCGAATTGTGAGGAATAGAGAGGCGTTTGTCAAGCGCAA
TATCAAGAAGGAAGCAGCAGAAGATGAATACCTTACGAAACATAAGAAGT
ATGTCGAGGAACGTTGA
back to top