Ggra1646.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1646.t1
Unique NameGgra1646.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:255992..257188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000007862
Preferred nameFNTB
PFAMsChurchill,Prenyltrans
Max annot lvl33208|Metazoa
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009611,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010556,GO:0010557,GO:0010604,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0032991,GO:0034097,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0071704,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue1.24e-103
EggNOG OGsCOG5029@1|root,KOG0365@2759|Eukaryota,38CYN@33154|Opisthokonta,3B9DH@33208|Metazoa,3CVQA@33213|Bilateria,487WW@7711|Chordata,4916X@7742|Vertebrata,49ZR4@7898|Actinopterygii
EC2.5.1.58
DescriptionFarnesyltransferase, CAAX box, beta
COG categoryO
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1646Ggra1646Gracilaria gracilis GNS1m malegenetig00000050_pilon 255992..257188 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1646.t1.stop1Ggra1646.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 255992..255994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1646.t1.CDS1Ggra1646.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 255992..257188 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1646.t1.exon1Ggra1646.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 255992..257188 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1646.t1.start1Ggra1646.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 257186..257188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1646.t1Ggra1646.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 255992..257188 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1646.t1 ID=Ggra1646.t1|Name=Ggra1646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MEPEMRQQQDQMQDQLPPPSKDYEQQRMHHQGVITDTWNRQFSVEERVHS
VRVNFDPDRPLMLLRDRHVSWLMRSLHSLPRCFHAFDVLQGWLAFWIIHS
LDLLQVVIPPQIASLIVAHIKRFQAPEGGYGGGPGQSSHLACTFSAFMAL
CALGTDEALESIDRERVISYILQMKQQDGSFRVSECGETDVRAMYCALSV
ASMLGALDEHVGIALRKDCDKYLSSLQSFDGGLGGEPGCEAHGGNTYCGT
ASAVILGDKKALDADKILNWAVMRQMAYEGGFQGRTNKLVDSCYSFWVGS
LFPLTASLMDSKKVSRLFDAGALERYLLECCQLENGGMRDKPGMPRDLMH
TCYALSGLSVAQHFGIGAGEAMRVRRTDPVYNLCVDKFEKAWLYFREV*
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spliced messenger RNA

>Ggra1646.t1 ID=Ggra1646.t1|Name=Ggra1646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000050_pilon:255992..257188- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCAGAGATGAGACAACAACAAGATCAGATGCAAGATCAGCTGCC
ACCTCCCTCCAAGGATTATGAGCAGCAGCGAATGCACCACCAAGGAGTTA
TCACCGACACATGGAACCGCCAATTCTCCGTGGAGGAACGCGTCCATTCG
GTCCGAGTCAATTTTGACCCGGATCGACCCCTCATGTTGCTTCGTGACAG
ACATGTCTCATGGCTCATGCGCAGTCTACATTCACTGCCGCGCTGCTTTC
ATGCCTTCGATGTGCTTCAGGGCTGGCTTGCTTTCTGGATCATTCATTCT
CTGGATTTGCTACAAGTCGTCATTCCGCCACAGATTGCCTCACTCATCGT
CGCCCACATCAAGCGATTTCAGGCTCCGGAGGGGGGGTATGGAGGTGGAC
CTGGCCAGAGCTCCCATCTAGCATGCACCTTTTCTGCCTTCATGGCTCTC
TGTGCACTCGGCACGGACGAGGCTTTGGAGTCCATTGACCGAGAACGTGT
CATCAGTTACATCTTGCAAATGAAGCAACAAGATGGATCCTTTCGCGTCA
GCGAGTGTGGCGAGACTGATGTGCGTGCCATGTATTGCGCCCTCAGCGTC
GCGTCAATGCTCGGTGCATTGGATGAACATGTGGGCATTGCGTTACGTAA
GGACTGTGACAAGTATCTTTCAAGCCTGCAGTCTTTTGATGGGGGCCTGG
GCGGCGAACCTGGCTGTGAAGCTCACGGTGGCAATACATACTGCGGAACG
GCGTCGGCTGTGATTCTCGGCGATAAGAAAGCTCTCGATGCGGATAAGAT
TCTTAACTGGGCGGTCATGCGACAAATGGCGTACGAAGGAGGTTTTCAGG
GACGCACCAATAAGCTGGTAGATTCTTGTTATTCGTTTTGGGTAGGCTCG
CTTTTTCCATTAACAGCCAGTCTCATGGATTCGAAGAAGGTGTCTAGGCT
GTTTGACGCAGGTGCGTTGGAAAGGTACTTGCTGGAATGCTGTCAGCTGG
AGAACGGCGGAATGCGCGATAAGCCTGGAATGCCCCGTGACCTGATGCAC
ACTTGCTATGCGTTGAGCGGCCTTAGTGTGGCTCAGCACTTTGGCATCGG
AGCGGGTGAAGCTATGCGAGTGCGTAGAACGGACCCGGTATACAATCTAT
GCGTGGACAAGTTTGAAAAGGCATGGTTGTACTTCCGTGAGGTGTGA
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protein sequence of Ggra1646.t1

>Ggra1646.t1 ID=Ggra1646.t1|Name=Ggra1646.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MEPEMRQQQDQMQDQLPPPSKDYEQQRMHHQGVITDTWNRQFSVEERVHS
VRVNFDPDRPLMLLRDRHVSWLMRSLHSLPRCFHAFDVLQGWLAFWIIHS
LDLLQVVIPPQIASLIVAHIKRFQAPEGGYGGGPGQSSHLACTFSAFMAL
CALGTDEALESIDRERVISYILQMKQQDGSFRVSECGETDVRAMYCALSV
ASMLGALDEHVGIALRKDCDKYLSSLQSFDGGLGGEPGCEAHGGNTYCGT
ASAVILGDKKALDADKILNWAVMRQMAYEGGFQGRTNKLVDSCYSFWVGS
LFPLTASLMDSKKVSRLFDAGALERYLLECCQLENGGMRDKPGMPRDLMH
TCYALSGLSVAQHFGIGAGEAMRVRRTDPVYNLCVDKFEKAWLYFREV*
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mRNA from alignment at tig00000050_pilon:255992..257188-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1646.t1 ID=Ggra1646.t1|Name=Ggra1646.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000050_pilon:255992..257188- (Gracilaria gracilis GNS1m male)
ATGGAACCAGAGATGAGACAACAACAAGATCAGATGCAAGATCAGCTGCC
ACCTCCCTCCAAGGATTATGAGCAGCAGCGAATGCACCACCAAGGAGTTA
TCACCGACACATGGAACCGCCAATTCTCCGTGGAGGAACGCGTCCATTCG
GTCCGAGTCAATTTTGACCCGGATCGACCCCTCATGTTGCTTCGTGACAG
ACATGTCTCATGGCTCATGCGCAGTCTACATTCACTGCCGCGCTGCTTTC
ATGCCTTCGATGTGCTTCAGGGCTGGCTTGCTTTCTGGATCATTCATTCT
CTGGATTTGCTACAAGTCGTCATTCCGCCACAGATTGCCTCACTCATCGT
CGCCCACATCAAGCGATTTCAGGCTCCGGAGGGGGGGTATGGAGGTGGAC
CTGGCCAGAGCTCCCATCTAGCATGCACCTTTTCTGCCTTCATGGCTCTC
TGTGCACTCGGCACGGACGAGGCTTTGGAGTCCATTGACCGAGAACGTGT
CATCAGTTACATCTTGCAAATGAAGCAACAAGATGGATCCTTTCGCGTCA
GCGAGTGTGGCGAGACTGATGTGCGTGCCATGTATTGCGCCCTCAGCGTC
GCGTCAATGCTCGGTGCATTGGATGAACATGTGGGCATTGCGTTACGTAA
GGACTGTGACAAGTATCTTTCAAGCCTGCAGTCTTTTGATGGGGGCCTGG
GCGGCGAACCTGGCTGTGAAGCTCACGGTGGCAATACATACTGCGGAACG
GCGTCGGCTGTGATTCTCGGCGATAAGAAAGCTCTCGATGCGGATAAGAT
TCTTAACTGGGCGGTCATGCGACAAATGGCGTACGAAGGAGGTTTTCAGG
GACGCACCAATAAGCTGGTAGATTCTTGTTATTCGTTTTGGGTAGGCTCG
CTTTTTCCATTAACAGCCAGTCTCATGGATTCGAAGAAGGTGTCTAGGCT
GTTTGACGCAGGTGCGTTGGAAAGGTACTTGCTGGAATGCTGTCAGCTGG
AGAACGGCGGAATGCGCGATAAGCCTGGAATGCCCCGTGACCTGATGCAC
ACTTGCTATGCGTTGAGCGGCCTTAGTGTGGCTCAGCACTTTGGCATCGG
AGCGGGTGAAGCTATGCGAGTGCGTAGAACGGACCCGGTATACAATCTAT
GCGTGGACAAGTTTGAAAAGGCATGGTTGTACTTCCGTGAGGTGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:255992..257188-

>Ggra1646.t1 ID=Ggra1646.t1|Name=Ggra1646.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000050_pilon:255992..257188- (Gracilaria gracilis GNS1m male)
ATGGAACCAGAGATGAGACAACAACAAGATCAGATGCAAGATCAGCTGCC
ACCTCCCTCCAAGGATTATGAGCAGCAGCGAATGCACCACCAAGGAGTTA
TCACCGACACATGGAACCGCCAATTCTCCGTGGAGGAACGCGTCCATTCG
GTCCGAGTCAATTTTGACCCGGATCGACCCCTCATGTTGCTTCGTGACAG
ACATGTCTCATGGCTCATGCGCAGTCTACATTCACTGCCGCGCTGCTTTC
ATGCCTTCGATGTGCTTCAGGGCTGGCTTGCTTTCTGGATCATTCATTCT
CTGGATTTGCTACAAGTCGTCATTCCGCCACAGATTGCCTCACTCATCGT
CGCCCACATCAAGCGATTTCAGGCTCCGGAGGGGGGGTATGGAGGTGGAC
CTGGCCAGAGCTCCCATCTAGCATGCACCTTTTCTGCCTTCATGGCTCTC
TGTGCACTCGGCACGGACGAGGCTTTGGAGTCCATTGACCGAGAACGTGT
CATCAGTTACATCTTGCAAATGAAGCAACAAGATGGATCCTTTCGCGTCA
GCGAGTGTGGCGAGACTGATGTGCGTGCCATGTATTGCGCCCTCAGCGTC
GCGTCAATGCTCGGTGCATTGGATGAACATGTGGGCATTGCGTTACGTAA
GGACTGTGACAAGTATCTTTCAAGCCTGCAGTCTTTTGATGGGGGCCTGG
GCGGCGAACCTGGCTGTGAAGCTCACGGTGGCAATACATACTGCGGAACG
GCGTCGGCTGTGATTCTCGGCGATAAGAAAGCTCTCGATGCGGATAAGAT
TCTTAACTGGGCGGTCATGCGACAAATGGCGTACGAAGGAGGTTTTCAGG
GACGCACCAATAAGCTGGTAGATTCTTGTTATTCGTTTTGGGTAGGCTCG
CTTTTTCCATTAACAGCCAGTCTCATGGATTCGAAGAAGGTGTCTAGGCT
GTTTGACGCAGGTGCGTTGGAAAGGTACTTGCTGGAATGCTGTCAGCTGG
AGAACGGCGGAATGCGCGATAAGCCTGGAATGCCCCGTGACCTGATGCAC
ACTTGCTATGCGTTGAGCGGCCTTAGTGTGGCTCAGCACTTTGGCATCGG
AGCGGGTGAAGCTATGCGAGTGCGTAGAACGGACCCGGTATACAATCTAT
GCGTGGACAAGTTTGAAAAGGCATGGTTGTACTTCCGTGAGGTGTGA
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