Ggra1638.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1638.t2
Unique NameGgra1638.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:130828..131529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1638Ggra1638Gracilaria gracilis GNS1m malegenetig00000050_pilon 130828..132906 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1638.t2.stop1Ggra1638.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 130828..130830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1638.t2.CDS1Ggra1638.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 130828..131529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1638.t2.exon1Ggra1638.t2.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 130828..131529 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1638.t2.start1Ggra1638.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 131527..131529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1638.t2Ggra1638.t2Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 130828..131529 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1638.t2 ID=Ggra1638.t2|Name=Ggra1638.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MGSSPTTSPASTASSSPSPFSSQTFDLTSSNQPIAPSSSPSPSLSQTLDL
TSSNQPIAPSSSPSPSLSQTLDLTSSNQPIAPSSSPSVSETNSASPSPTT
TVSTSGVTTATRSSSPTSSPSASPAGSMSPTPSPSSSPTPSPRCPCKCTN
SNLGFDVQNFVRNCRATNSFSRGFGSKKFFGDSDIFSLCENELRECSNQA
ASNLQVSDGSLDISDFDGVGNQMLPNGFIDDFF*
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spliced messenger RNA

>Ggra1638.t2 ID=Ggra1638.t2|Name=Ggra1638.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000050_pilon:130828..131529- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCATCTCCAACTACTTCACCTGCCTCGACTGCAAGTTCATCCCC
ATCTCCCTTCTCGTCGCAGACTTTTGATTTAACGTCATCAAATCAGCCTA
TAGCCCCATCCTCATCCCCATCTCCCTCTTTGTCGCAGACTCTTGATTTA
ACGTCATCAAATCAACCGATAGCCCCATCCTCATCCCCATCTCCCTCTTT
GTCGCAGACTCTTGATTTAACGTCATCAAATCAACCGATAGCCCCATCCT
CATCGCCATCGGTGTCGGAGACCAATTCAGCCTCACCGTCGCCAACCACC
ACGGTATCTACGTCTGGAGTCACTACAGCCACACGATCAAGTTCCCCGAC
ATCTTCTCCCTCTGCATCACCAGCCGGGTCCATGTCGCCTACGCCATCTC
CCTCGTCATCTCCTACGCCGTCTCCGAGATGTCCTTGCAAGTGCACAAAC
TCTAATTTAGGGTTTGATGTACAAAACTTTGTACGGAATTGTCGCGCAAC
GAACTCGTTCTCGCGTGGTTTTGGATCGAAGAAGTTCTTTGGTGATAGTG
ATATTTTCAGCTTATGTGAGAACGAACTTCGCGAGTGCAGTAATCAAGCG
GCCAGTAATCTCCAAGTGTCAGATGGTAGCCTCGACATATCAGATTTTGA
CGGTGTTGGGAATCAGATGCTTCCAAATGGCTTCATAGACGATTTCTTTT
GA
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protein sequence of Ggra1638.t2

>Ggra1638.t2 ID=Ggra1638.t2|Name=Ggra1638.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MGSSPTTSPASTASSSPSPFSSQTFDLTSSNQPIAPSSSPSPSLSQTLDL
TSSNQPIAPSSSPSPSLSQTLDLTSSNQPIAPSSSPSVSETNSASPSPTT
TVSTSGVTTATRSSSPTSSPSASPAGSMSPTPSPSSSPTPSPRCPCKCTN
SNLGFDVQNFVRNCRATNSFSRGFGSKKFFGDSDIFSLCENELRECSNQA
ASNLQVSDGSLDISDFDGVGNQMLPNGFIDDFF*
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mRNA from alignment at tig00000050_pilon:130828..131529-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1638.t2 ID=Ggra1638.t2|Name=Ggra1638.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000050_pilon:130828..131529- (Gracilaria gracilis GNS1m male)
ATGGGATCATCTCCAACTACTTCACCTGCCTCGACTGCAAGTTCATCCCC
ATCTCCCTTCTCGTCGCAGACTTTTGATTTAACGTCATCAAATCAGCCTA
TAGCCCCATCCTCATCCCCATCTCCCTCTTTGTCGCAGACTCTTGATTTA
ACGTCATCAAATCAACCGATAGCCCCATCCTCATCCCCATCTCCCTCTTT
GTCGCAGACTCTTGATTTAACGTCATCAAATCAACCGATAGCCCCATCCT
CATCGCCATCGGTGTCGGAGACCAATTCAGCCTCACCGTCGCCAACCACC
ACGGTATCTACGTCTGGAGTCACTACAGCCACACGATCAAGTTCCCCGAC
ATCTTCTCCCTCTGCATCACCAGCCGGGTCCATGTCGCCTACGCCATCTC
CCTCGTCATCTCCTACGCCGTCTCCGAGATGTCCTTGCAAGTGCACAAAC
TCTAATTTAGGGTTTGATGTACAAAACTTTGTACGGAATTGTCGCGCAAC
GAACTCGTTCTCGCGTGGTTTTGGATCGAAGAAGTTCTTTGGTGATAGTG
ATATTTTCAGCTTATGTGAGAACGAACTTCGCGAGTGCAGTAATCAAGCG
GCCAGTAATCTCCAAGTGTCAGATGGTAGCCTCGACATATCAGATTTTGA
CGGTGTTGGGAATCAGATGCTTCCAAATGGCTTCATAGACGATTTCTTTT
GA
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Coding sequence (CDS) from alignment at tig00000050_pilon:130828..131529-

>Ggra1638.t2 ID=Ggra1638.t2|Name=Ggra1638.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000050_pilon:130828..131529- (Gracilaria gracilis GNS1m male)
ATGGGATCATCTCCAACTACTTCACCTGCCTCGACTGCAAGTTCATCCCC
ATCTCCCTTCTCGTCGCAGACTTTTGATTTAACGTCATCAAATCAGCCTA
TAGCCCCATCCTCATCCCCATCTCCCTCTTTGTCGCAGACTCTTGATTTA
ACGTCATCAAATCAACCGATAGCCCCATCCTCATCCCCATCTCCCTCTTT
GTCGCAGACTCTTGATTTAACGTCATCAAATCAACCGATAGCCCCATCCT
CATCGCCATCGGTGTCGGAGACCAATTCAGCCTCACCGTCGCCAACCACC
ACGGTATCTACGTCTGGAGTCACTACAGCCACACGATCAAGTTCCCCGAC
ATCTTCTCCCTCTGCATCACCAGCCGGGTCCATGTCGCCTACGCCATCTC
CCTCGTCATCTCCTACGCCGTCTCCGAGATGTCCTTGCAAGTGCACAAAC
TCTAATTTAGGGTTTGATGTACAAAACTTTGTACGGAATTGTCGCGCAAC
GAACTCGTTCTCGCGTGGTTTTGGATCGAAGAAGTTCTTTGGTGATAGTG
ATATTTTCAGCTTATGTGAGAACGAACTTCGCGAGTGCAGTAATCAAGCG
GCCAGTAATCTCCAAGTGTCAGATGGTAGCCTCGACATATCAGATTTTGA
CGGTGTTGGGAATCAGATGCTTCCAAATGGCTTCATAGACGATTTCTTTT
GA
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