Ggra1635.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1635.t1
Unique NameGgra1635.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:121126..122252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705348.1
PFAMsDUF760
Max annot lvl2759|Eukaryota
Evalue1.21e-52
EggNOG OGs28KAV@1|root,2QSRQ@2759|Eukaryota
DescriptionProtein of unknown function (DUF760)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1635Ggra1635Gracilaria gracilis GNS1m malegenetig00000050_pilon 121126..122252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1Ggra1635.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 121126..122252 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1.stop1Ggra1635.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 121126..121128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1.CDS1Ggra1635.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 121126..121134 -
Ggra1635.t1.CDS2Ggra1635.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 121243..121265 -
Ggra1635.t1.CDS3Ggra1635.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 121343..122252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1.exon1Ggra1635.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 121126..121134 -
Ggra1635.t1.exon2Ggra1635.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 121243..121265 -
Ggra1635.t1.exon3Ggra1635.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 121343..122252 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1.intron1Ggra1635.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 121135..121242 -
Ggra1635.t1.intron2Ggra1635.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 121266..121342 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1635.t1.start1Ggra1635.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 122250..122252 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1635.t1 ID=Ggra1635.t1|Name=Ggra1635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MNAAFQQPLALLPRIRNVSSRSPRRPVYTVRRACRPRWTALASPSDGNPG
RSDDGSRDSEFNLDLSTQPGAEEQNELFKIIRAVPPPDLVKKFTETSPPV
VQNAIRETLVSMLGSLPPLAFAASISTMSSNLVQLFHSSLVTGYMFRNAT
YRMELTRSLDWSGLRALPSPEDEPPQIEGGTAVFTQNDGSRVEVPVEEYI
SDLRQTVTNLQGELERERKGGNELLSFIATMEKENIEALTKNAGDEVVDA
MKKVVQAVTKSQGINTEKDGIIHASAPDLGQLLFYLMVSGFFLREAEVHL
DLQPKSTAEKIGD*
back to top

spliced messenger RNA

>Ggra1635.t1 ID=Ggra1635.t1|Name=Ggra1635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000050_pilon:121126..122252- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTGCCTTCCAACAGCCGCTGGCCCTTTTGCCTCGAATTCGAAA
TGTCTCTAGCCGTTCTCCTCGGCGGCCCGTGTACACTGTGCGTCGCGCCT
GCCGCCCTCGGTGGACCGCTTTGGCGTCGCCGTCCGATGGCAACCCAGGG
CGCAGCGACGATGGGTCACGAGATTCTGAGTTTAACTTAGACCTATCAAC
ACAACCTGGAGCAGAGGAGCAAAATGAGCTCTTCAAGATTATTAGGGCAG
TGCCTCCCCCTGATCTTGTTAAGAAATTCACGGAGACTTCGCCACCAGTT
GTGCAAAATGCGATCAGAGAGACGCTTGTTAGCATGCTTGGAAGTTTGCC
GCCGCTTGCTTTTGCTGCTTCTATTTCGACTATGTCTTCGAACCTTGTGC
AATTGTTTCATTCTTCTTTGGTGACTGGGTACATGTTTAGAAACGCTACT
TACAGAATGGAGCTCACAAGAAGTCTGGACTGGTCTGGGCTTCGAGCTCT
CCCTTCTCCTGAAGACGAACCTCCGCAGATTGAAGGTGGAACCGCCGTGT
TTACGCAGAACGATGGGTCTAGGGTGGAGGTACCGGTAGAGGAATACATA
TCAGATTTGCGTCAAACTGTGACTAATCTTCAGGGGGAACTTGAGAGGGA
ACGCAAGGGCGGTAATGAACTGCTAAGTTTTATCGCCACAATGGAGAAAG
AAAACATTGAAGCTCTAACGAAGAATGCGGGAGACGAAGTCGTAGATGCC
ATGAAGAAAGTTGTTCAAGCTGTCACAAAGTCGCAAGGGATTAATACGGA
AAAGGATGGTATTATCCATGCATCCGCTCCAGACTTGGGACAGCTGCTCT
TCTATTTAATGGTTAGTGGGTTCTTCTTGAGGGAAGCGGAGGTTCACCTT
GACCTGCAGCCCAAGTCAACCGCCGAAAAAATCGGGGATTGA
back to top

protein sequence of Ggra1635.t1

>Ggra1635.t1 ID=Ggra1635.t1|Name=Ggra1635.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MNAAFQQPLALLPRIRNVSSRSPRRPVYTVRRACRPRWTALASPSDGNPG
RSDDGSRDSEFNLDLSTQPGAEEQNELFKIIRAVPPPDLVKKFTETSPPV
VQNAIRETLVSMLGSLPPLAFAASISTMSSNLVQLFHSSLVTGYMFRNAT
YRMELTRSLDWSGLRALPSPEDEPPQIEGGTAVFTQNDGSRVEVPVEEYI
SDLRQTVTNLQGELERERKGGNELLSFIATMEKENIEALTKNAGDEVVDA
MKKVVQAVTKSQGINTEKDGIIHASAPDLGQLLFYLMVSGFFLREAEVHL
DLQPKSTAEKIGD*
back to top

mRNA from alignment at tig00000050_pilon:121126..122252-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1635.t1 ID=Ggra1635.t1|Name=Ggra1635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1127bp|location=Sequence derived from alignment at tig00000050_pilon:121126..122252- (Gracilaria gracilis GNS1m male)
ATGAACGCTGCCTTCCAACAGCCGCTGGCCCTTTTGCCTCGAATTCGAAA
TGTCTCTAGCCGTTCTCCTCGGCGGCCCGTGTACACTGTGCGTCGCGCCT
GCCGCCCTCGGTGGACCGCTTTGGCGTCGCCGTCCGATGGCAACCCAGGG
CGCAGCGACGATGGGTCACGAGATTCTGAGTTTAACTTAGACCTATCAAC
ACAACCTGGAGCAGAGGAGCAAAATGAGCTCTTCAAGATTATTAGGGCAG
TGCCTCCCCCTGATCTTGTTAAGAAATTCACGGAGACTTCGCCACCAGTT
GTGCAAAATGCGATCAGAGAGACGCTTGTTAGCATGCTTGGAAGTTTGCC
GCCGCTTGCTTTTGCTGCTTCTATTTCGACTATGTCTTCGAACCTTGTGC
AATTGTTTCATTCTTCTTTGGTGACTGGGTACATGTTTAGAAACGCTACT
TACAGAATGGAGCTCACAAGAAGTCTGGACTGGTCTGGGCTTCGAGCTCT
CCCTTCTCCTGAAGACGAACCTCCGCAGATTGAAGGTGGAACCGCCGTGT
TTACGCAGAACGATGGGTCTAGGGTGGAGGTACCGGTAGAGGAATACATA
TCAGATTTGCGTCAAACTGTGACTAATCTTCAGGGGGAACTTGAGAGGGA
ACGCAAGGGCGGTAATGAACTGCTAAGTTTTATCGCCACAATGGAGAAAG
AAAACATTGAAGCTCTAACGAAGAATGCGGGAGACGAAGTCGTAGATGCC
ATGAAGAAAGTTGTTCAAGCTGTCACAAAGTCGCAAGGGATTAATACGGA
AAAGGATGGTATTATCCATGCATCCGCTCCAGACTTGGGACAGCTGCTCT
TCTATTTAATGGTTAGTGGGTTCTTCTTGAGGGAAGCGGAGGTTCACCTT
GACCTGCAGCGTAAACTTGGTGGTGATACATCAAGCCTCAAGAATTTGTT
AGGTGGTACAGAATCAGATTCCGGCGACTCCGGGAAGCCAAGTCAACCGC
CGAAAAAATCGTAAGCATGTGTAAGGGTCTCTTCACTTTGCGTTTCGGTC
GCGATAACGTATTTAACATCCAAATATCCAATCAACACAAACTGGATAAT
GACTGCATGCTGTTGAAGGGGGATTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:121126..122252-

>Ggra1635.t1 ID=Ggra1635.t1|Name=Ggra1635.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000050_pilon:121126..122252- (Gracilaria gracilis GNS1m male)
ATGAACGCTGCCTTCCAACAGCCGCTGGCCCTTTTGCCTCGAATTCGAAA
TGTCTCTAGCCGTTCTCCTCGGCGGCCCGTGTACACTGTGCGTCGCGCCT
GCCGCCCTCGGTGGACCGCTTTGGCGTCGCCGTCCGATGGCAACCCAGGG
CGCAGCGACGATGGGTCACGAGATTCTGAGTTTAACTTAGACCTATCAAC
ACAACCTGGAGCAGAGGAGCAAAATGAGCTCTTCAAGATTATTAGGGCAG
TGCCTCCCCCTGATCTTGTTAAGAAATTCACGGAGACTTCGCCACCAGTT
GTGCAAAATGCGATCAGAGAGACGCTTGTTAGCATGCTTGGAAGTTTGCC
GCCGCTTGCTTTTGCTGCTTCTATTTCGACTATGTCTTCGAACCTTGTGC
AATTGTTTCATTCTTCTTTGGTGACTGGGTACATGTTTAGAAACGCTACT
TACAGAATGGAGCTCACAAGAAGTCTGGACTGGTCTGGGCTTCGAGCTCT
CCCTTCTCCTGAAGACGAACCTCCGCAGATTGAAGGTGGAACCGCCGTGT
TTACGCAGAACGATGGGTCTAGGGTGGAGGTACCGGTAGAGGAATACATA
TCAGATTTGCGTCAAACTGTGACTAATCTTCAGGGGGAACTTGAGAGGGA
ACGCAAGGGCGGTAATGAACTGCTAAGTTTTATCGCCACAATGGAGAAAG
AAAACATTGAAGCTCTAACGAAGAATGCGGGAGACGAAGTCGTAGATGCC
ATGAAGAAAGTTGTTCAAGCTGTCACAAAGTCGCAAGGGATTAATACGGA
AAAGGATGGTATTATCCATGCATCCGCTCCAGACTTGGGACAGCTGCTCT
TCTATTTAATGGTTAGTGGGTTCTTCTTGAGGGAAGCGGAGGTTCACCTT
GACCTGCAGCCCAAGTCAACCGCCGAAAAAATCGGGGATTGA
back to top