Ggra163.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra163.t1
Unique Name	Ggra163.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000253_pilon	contig	tig00000253_pilon:40494..42077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra163	Ggra163	Gracilaria gracilis GNS1m male	gene	tig00000253_pilon 40494..42077 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra163.t1.start1	Ggra163.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000253_pilon 40494..40496 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra163.t1.CDS1	Ggra163.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000253_pilon 40494..42077 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra163.t1.exon1	Ggra163.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000253_pilon 40494..42077 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra163.t1.stop1	Ggra163.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000253_pilon 42075..42077 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra163.t1	Ggra163.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000253_pilon 40494..42077 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000253_pilon:40494..42077+
coding sequence from alignment at tig00000253_pilon:40494..42077+

mRNA sequence

>Ggra163.t1 ID=Ggra163.t1|Name=Ggra163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp
MLKGHHVVFDNSRDSGRATPRSKKRTFQEDFKLKKERLRCPHCKQPDVLS
LNGSSSGRFAVKCRICQRKVTGGKLDQLLHDCEVPTPILTPTQPPKVAIV
CPSTPPASAKPLSFAPARNNLIPSPDGASPEDPVNLCAQESLQSVSSVPS
FSSAPVLTTPSLAAQVRAAVAQKESFSTPPLSTNAPRPAKKSKQAVENRT
PTPAIPVQKLIPNPGSILRINRKKTYNELLIENKALYEELETQRDSISLL
KRQVEVLQRAMEEAGDKRNHPLAIEVNEARNHPDDVTRPAPPASPIPQPI
QQVAEKVHSQIVPKKKAAAKPAALSWAQIAAKPALNSVPSETKAKLVETS
KALRDAGLIPAAAKPKPKVIPVYFGNVRRGPIGALRRALLLSLPKWSVIS
LSFIGNSALEVLCHEPLASRLIATMKLLKYRHLANFDPKGSGEATVKAKS
HLTACFRRWKWCSHRSTSPSAKTWYGIQADALAEKHPDLQLHSPSPSPSK
ESVGSTENQDDQTQNEISNANPGGSDQ*

spliced messenger RNA

>Ggra163.t1 ID=Ggra163.t1|Name=Ggra163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000253_pilon:40494..42077+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGGGCCACCACGTGGTCTTCGACAACTCTCGCGACTCAGGGCG
TGCCACGCCTCGCTCCAAAAAGCGCACCTTTCAAGAGGACTTCAAACTCA
AGAAGGAACGCCTACGCTGCCCGCATTGCAAACAGCCTGATGTACTCTCT
CTCAATGGGTCTTCTAGTGGGCGCTTTGCGGTGAAATGTCGCATCTGCCA
ACGCAAAGTAACTGGCGGAAAACTTGACCAACTCCTTCATGATTGTGAGG
TACCAACCCCAATCCTGACGCCAACTCAGCCGCCGAAGGTTGCTATTGTT
TGTCCTTCGACGCCGCCCGCGAGTGCGAAGCCCCTATCCTTCGCGCCTGC
GCGCAACAACTTGATCCCATCTCCTGACGGGGCCTCACCAGAAGACCCTG
TCAACCTCTGTGCTCAGGAATCGCTCCAATCTGTATCGTCTGTCCCCAGC
TTTAGTTCAGCTCCAGTTCTGACTACCCCAAGCTTGGCAGCTCAGGTTCG
TGCAGCAGTAGCACAAAAGGAATCTTTCTCAACGCCACCTCTGAGTACGA
ATGCTCCCCGTCCTGCCAAGAAATCCAAGCAGGCGGTAGAGAATCGAACT
CCTACCCCAGCAATCCCGGTTCAGAAGCTCATTCCGAATCCCGGATCTAT
CCTCAGAATCAATCGCAAGAAGACATACAACGAATTGTTGATTGAGAACA
AAGCGCTATACGAAGAACTTGAGACGCAAAGAGACTCCATTTCTCTACTC
AAGAGGCAGGTAGAGGTACTGCAACGTGCAATGGAAGAAGCGGGGGATAA
AAGGAATCACCCTCTTGCTATTGAAGTTAACGAAGCTAGGAACCACCCTG
ACGACGTCACGCGTCCTGCACCTCCAGCATCTCCCATCCCGCAACCAATT
CAACAAGTAGCTGAAAAGGTTCACTCACAGATCGTACCGAAGAAAAAGGC
TGCAGCCAAGCCTGCAGCTCTCTCTTGGGCACAGATTGCGGCAAAACCTG
CGCTAAATTCAGTCCCAAGTGAAACGAAGGCAAAGTTGGTCGAGACCAGC
AAAGCTCTCCGCGACGCCGGCCTGATCCCAGCAGCGGCTAAACCCAAACC
GAAAGTTATCCCTGTCTACTTTGGCAACGTACGCCGAGGCCCTATTGGAG
CTCTACGACGTGCACTACTCCTCTCTCTGCCCAAATGGTCAGTAATCAGC
CTCTCTTTTATTGGCAACTCGGCGTTAGAAGTCCTTTGTCATGAACCTTT
GGCTAGTCGACTGATCGCAACGATGAAGCTGCTTAAATACCGTCATCTCG
CCAACTTCGACCCGAAAGGATCTGGCGAGGCAACGGTGAAGGCAAAGTCG
CACCTCACGGCTTGCTTTAGAAGATGGAAATGGTGTTCCCACCGCTCTAC
GTCTCCTTCGGCAAAGACCTGGTACGGCATCCAAGCTGATGCTCTTGCAG
AGAAACACCCTGACCTGCAACTCCATTCTCCGTCCCCTTCCCCATCAAAG
GAATCTGTTGGCTCTACAGAAAATCAGGACGACCAAACCCAGAACGAAAT
CTCAAATGCGAACCCTGGGGGTAGCGATCAATGA

protein sequence of Ggra163.t1

>Ggra163.t1 ID=Ggra163.t1|Name=Ggra163.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=528bp
MLKGHHVVFDNSRDSGRATPRSKKRTFQEDFKLKKERLRCPHCKQPDVLS
LNGSSSGRFAVKCRICQRKVTGGKLDQLLHDCEVPTPILTPTQPPKVAIV
CPSTPPASAKPLSFAPARNNLIPSPDGASPEDPVNLCAQESLQSVSSVPS
FSSAPVLTTPSLAAQVRAAVAQKESFSTPPLSTNAPRPAKKSKQAVENRT
PTPAIPVQKLIPNPGSILRINRKKTYNELLIENKALYEELETQRDSISLL
KRQVEVLQRAMEEAGDKRNHPLAIEVNEARNHPDDVTRPAPPASPIPQPI
QQVAEKVHSQIVPKKKAAAKPAALSWAQIAAKPALNSVPSETKAKLVETS
KALRDAGLIPAAAKPKPKVIPVYFGNVRRGPIGALRRALLLSLPKWSVIS
LSFIGNSALEVLCHEPLASRLIATMKLLKYRHLANFDPKGSGEATVKAKS
HLTACFRRWKWCSHRSTSPSAKTWYGIQADALAEKHPDLQLHSPSPSPSK
ESVGSTENQDDQTQNEISNANPGGSDQ*

mRNA from alignment at tig00000253_pilon:40494..42077+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra163.t1 ID=Ggra163.t1|Name=Ggra163.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000253_pilon:40494..42077+ (Gracilaria gracilis GNS1m male)
ATGCTGAAGGGCCACCACGTGGTCTTCGACAACTCTCGCGACTCAGGGCG
TGCCACGCCTCGCTCCAAAAAGCGCACCTTTCAAGAGGACTTCAAACTCA
AGAAGGAACGCCTACGCTGCCCGCATTGCAAACAGCCTGATGTACTCTCT
CTCAATGGGTCTTCTAGTGGGCGCTTTGCGGTGAAATGTCGCATCTGCCA
ACGCAAAGTAACTGGCGGAAAACTTGACCAACTCCTTCATGATTGTGAGG
TACCAACCCCAATCCTGACGCCAACTCAGCCGCCGAAGGTTGCTATTGTT
TGTCCTTCGACGCCGCCCGCGAGTGCGAAGCCCCTATCCTTCGCGCCTGC
GCGCAACAACTTGATCCCATCTCCTGACGGGGCCTCACCAGAAGACCCTG
TCAACCTCTGTGCTCAGGAATCGCTCCAATCTGTATCGTCTGTCCCCAGC
TTTAGTTCAGCTCCAGTTCTGACTACCCCAAGCTTGGCAGCTCAGGTTCG
TGCAGCAGTAGCACAAAAGGAATCTTTCTCAACGCCACCTCTGAGTACGA
ATGCTCCCCGTCCTGCCAAGAAATCCAAGCAGGCGGTAGAGAATCGAACT
CCTACCCCAGCAATCCCGGTTCAGAAGCTCATTCCGAATCCCGGATCTAT
CCTCAGAATCAATCGCAAGAAGACATACAACGAATTGTTGATTGAGAACA
AAGCGCTATACGAAGAACTTGAGACGCAAAGAGACTCCATTTCTCTACTC
AAGAGGCAGGTAGAGGTACTGCAACGTGCAATGGAAGAAGCGGGGGATAA
AAGGAATCACCCTCTTGCTATTGAAGTTAACGAAGCTAGGAACCACCCTG
ACGACGTCACGCGTCCTGCACCTCCAGCATCTCCCATCCCGCAACCAATT
CAACAAGTAGCTGAAAAGGTTCACTCACAGATCGTACCGAAGAAAAAGGC
TGCAGCCAAGCCTGCAGCTCTCTCTTGGGCACAGATTGCGGCAAAACCTG
CGCTAAATTCAGTCCCAAGTGAAACGAAGGCAAAGTTGGTCGAGACCAGC
AAAGCTCTCCGCGACGCCGGCCTGATCCCAGCAGCGGCTAAACCCAAACC
GAAAGTTATCCCTGTCTACTTTGGCAACGTACGCCGAGGCCCTATTGGAG
CTCTACGACGTGCACTACTCCTCTCTCTGCCCAAATGGTCAGTAATCAGC
CTCTCTTTTATTGGCAACTCGGCGTTAGAAGTCCTTTGTCATGAACCTTT
GGCTAGTCGACTGATCGCAACGATGAAGCTGCTTAAATACCGTCATCTCG
CCAACTTCGACCCGAAAGGATCTGGCGAGGCAACGGTGAAGGCAAAGTCG
CACCTCACGGCTTGCTTTAGAAGATGGAAATGGTGTTCCCACCGCTCTAC
GTCTCCTTCGGCAAAGACCTGGTACGGCATCCAAGCTGATGCTCTTGCAG
AGAAACACCCTGACCTGCAACTCCATTCTCCGTCCCCTTCCCCATCAAAG
GAATCTGTTGGCTCTACAGAAAATCAGGACGACCAAACCCAGAACGAAAT
CTCAAATGCGAACCCTGGGGGTAGCGATCAATGA

Coding sequence (CDS) from alignment at tig00000253_pilon:40494..42077+

>Ggra163.t1 ID=Ggra163.t1|Name=Ggra163.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00000253_pilon:40494..42077+ (Gracilaria gracilis GNS1m male)
ATGCTGAAGGGCCACCACGTGGTCTTCGACAACTCTCGCGACTCAGGGCG
TGCCACGCCTCGCTCCAAAAAGCGCACCTTTCAAGAGGACTTCAAACTCA
AGAAGGAACGCCTACGCTGCCCGCATTGCAAACAGCCTGATGTACTCTCT
CTCAATGGGTCTTCTAGTGGGCGCTTTGCGGTGAAATGTCGCATCTGCCA
ACGCAAAGTAACTGGCGGAAAACTTGACCAACTCCTTCATGATTGTGAGG
TACCAACCCCAATCCTGACGCCAACTCAGCCGCCGAAGGTTGCTATTGTT
TGTCCTTCGACGCCGCCCGCGAGTGCGAAGCCCCTATCCTTCGCGCCTGC
GCGCAACAACTTGATCCCATCTCCTGACGGGGCCTCACCAGAAGACCCTG
TCAACCTCTGTGCTCAGGAATCGCTCCAATCTGTATCGTCTGTCCCCAGC
TTTAGTTCAGCTCCAGTTCTGACTACCCCAAGCTTGGCAGCTCAGGTTCG
TGCAGCAGTAGCACAAAAGGAATCTTTCTCAACGCCACCTCTGAGTACGA
ATGCTCCCCGTCCTGCCAAGAAATCCAAGCAGGCGGTAGAGAATCGAACT
CCTACCCCAGCAATCCCGGTTCAGAAGCTCATTCCGAATCCCGGATCTAT
CCTCAGAATCAATCGCAAGAAGACATACAACGAATTGTTGATTGAGAACA
AAGCGCTATACGAAGAACTTGAGACGCAAAGAGACTCCATTTCTCTACTC
AAGAGGCAGGTAGAGGTACTGCAACGTGCAATGGAAGAAGCGGGGGATAA
AAGGAATCACCCTCTTGCTATTGAAGTTAACGAAGCTAGGAACCACCCTG
ACGACGTCACGCGTCCTGCACCTCCAGCATCTCCCATCCCGCAACCAATT
CAACAAGTAGCTGAAAAGGTTCACTCACAGATCGTACCGAAGAAAAAGGC
TGCAGCCAAGCCTGCAGCTCTCTCTTGGGCACAGATTGCGGCAAAACCTG
CGCTAAATTCAGTCCCAAGTGAAACGAAGGCAAAGTTGGTCGAGACCAGC
AAAGCTCTCCGCGACGCCGGCCTGATCCCAGCAGCGGCTAAACCCAAACC
GAAAGTTATCCCTGTCTACTTTGGCAACGTACGCCGAGGCCCTATTGGAG
CTCTACGACGTGCACTACTCCTCTCTCTGCCCAAATGGTCAGTAATCAGC
CTCTCTTTTATTGGCAACTCGGCGTTAGAAGTCCTTTGTCATGAACCTTT
GGCTAGTCGACTGATCGCAACGATGAAGCTGCTTAAATACCGTCATCTCG
CCAACTTCGACCCGAAAGGATCTGGCGAGGCAACGGTGAAGGCAAAGTCG
CACCTCACGGCTTGCTTTAGAAGATGGAAATGGTGTTCCCACCGCTCTAC
GTCTCCTTCGGCAAAGACCTGGTACGGCATCCAAGCTGATGCTCTTGCAG
AGAAACACCCTGACCTGCAACTCCATTCTCCGTCCCCTTCCCCATCAAAG
GAATCTGTTGGCTCTACAGAAAATCAGGACGACCAAACCCAGAACGAAAT
CTCAAATGCGAACCCTGGGGGTAGCGATCAATGA