Ggra1626.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1626.t1
Unique NameGgra1626.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:60326..60847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1626Ggra1626Gracilaria gracilis GNS1m malegenetig00000050_pilon 60326..60847 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1626.t1.start1Ggra1626.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 60326..60328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1626.t1.CDS1Ggra1626.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 60326..60847 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1626.t1.exon1Ggra1626.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 60326..60847 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1626.t1.stop1Ggra1626.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 60845..60847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1626.t1Ggra1626.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 60326..60847 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1626.t1 ID=Ggra1626.t1|Name=Ggra1626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=174bp
MNPQDYHQLQQGTSAQNLPSAGQKDTIGLTGSSRQSVFMKHGGATSSAQK
AVKTSPKYLNVATSNRVGKLSSGGVQVSNGLLGKPSAAIVHSMGSTSIPQ
NWGIHSYPIESHPVLSSSSGKIITYGTDRRGGPRIMHTYMPSSMNLTRDA
GANGKASIGGAVTLRTGAAEGTR*
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spliced messenger RNA

>Ggra1626.t1 ID=Ggra1626.t1|Name=Ggra1626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000050_pilon:60326..60847+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCTCAAGACTATCATCAACTACAACAGGGCACCAGTGCTCAGAA
TCTTCCCAGCGCTGGGCAGAAGGATACGATTGGTCTGACTGGTAGCTCCA
GGCAATCGGTTTTCATGAAGCACGGAGGTGCTACTTCTTCAGCACAGAAA
GCAGTGAAGACTTCTCCGAAGTATTTAAATGTGGCCACAAGCAATAGAGT
CGGGAAGCTATCATCAGGAGGAGTGCAGGTCTCGAATGGGCTACTTGGAA
AACCATCCGCTGCGATTGTTCATTCAATGGGGTCCACTTCTATTCCACAG
AATTGGGGCATTCATTCATATCCCATCGAGTCGCACCCCGTTTTGTCTTC
TAGTAGTGGGAAGATCATTACTTACGGTACTGATAGAAGGGGTGGACCCA
GAATTATGCACACATATATGCCCTCCAGTATGAATCTAACACGCGACGCC
GGAGCGAATGGAAAGGCGAGCATAGGTGGTGCTGTCACGTTAAGAACGGG
TGCGGCCGAGGGTACTCGGTGA
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protein sequence of Ggra1626.t1

>Ggra1626.t1 ID=Ggra1626.t1|Name=Ggra1626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=174bp
MNPQDYHQLQQGTSAQNLPSAGQKDTIGLTGSSRQSVFMKHGGATSSAQK
AVKTSPKYLNVATSNRVGKLSSGGVQVSNGLLGKPSAAIVHSMGSTSIPQ
NWGIHSYPIESHPVLSSSSGKIITYGTDRRGGPRIMHTYMPSSMNLTRDA
GANGKASIGGAVTLRTGAAEGTR*
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mRNA from alignment at tig00000050_pilon:60326..60847+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1626.t1 ID=Ggra1626.t1|Name=Ggra1626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp|location=Sequence derived from alignment at tig00000050_pilon:60326..60847+ (Gracilaria gracilis GNS1m male)
ATGAACCCTCAAGACTATCATCAACTACAACAGGGCACCAGTGCTCAGAA
TCTTCCCAGCGCTGGGCAGAAGGATACGATTGGTCTGACTGGTAGCTCCA
GGCAATCGGTTTTCATGAAGCACGGAGGTGCTACTTCTTCAGCACAGAAA
GCAGTGAAGACTTCTCCGAAGTATTTAAATGTGGCCACAAGCAATAGAGT
CGGGAAGCTATCATCAGGAGGAGTGCAGGTCTCGAATGGGCTACTTGGAA
AACCATCCGCTGCGATTGTTCATTCAATGGGGTCCACTTCTATTCCACAG
AATTGGGGCATTCATTCATATCCCATCGAGTCGCACCCCGTTTTGTCTTC
TAGTAGTGGGAAGATCATTACTTACGGTACTGATAGAAGGGGTGGACCCA
GAATTATGCACACATATATGCCCTCCAGTATGAATCTAACACGCGACGCC
GGAGCGAATGGAAAGGCGAGCATAGGTGGTGCTGTCACGTTAAGAACGGG
TGCGGCCGAGGGTACTCGGTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:60326..60847+

>Ggra1626.t1 ID=Ggra1626.t1|Name=Ggra1626.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=522bp|location=Sequence derived from alignment at tig00000050_pilon:60326..60847+ (Gracilaria gracilis GNS1m male)
ATGAACCCTCAAGACTATCATCAACTACAACAGGGCACCAGTGCTCAGAA
TCTTCCCAGCGCTGGGCAGAAGGATACGATTGGTCTGACTGGTAGCTCCA
GGCAATCGGTTTTCATGAAGCACGGAGGTGCTACTTCTTCAGCACAGAAA
GCAGTGAAGACTTCTCCGAAGTATTTAAATGTGGCCACAAGCAATAGAGT
CGGGAAGCTATCATCAGGAGGAGTGCAGGTCTCGAATGGGCTACTTGGAA
AACCATCCGCTGCGATTGTTCATTCAATGGGGTCCACTTCTATTCCACAG
AATTGGGGCATTCATTCATATCCCATCGAGTCGCACCCCGTTTTGTCTTC
TAGTAGTGGGAAGATCATTACTTACGGTACTGATAGAAGGGGTGGACCCA
GAATTATGCACACATATATGCCCTCCAGTATGAATCTAACACGCGACGCC
GGAGCGAATGGAAAGGCGAGCATAGGTGGTGCTGTCACGTTAAGAACGGG
TGCGGCCGAGGGTACTCGGTGA
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