Ggra1625.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1625.t1
Unique NameGgra1625.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:56645..57102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1625Ggra1625Gracilaria gracilis GNS1m malegenetig00000050_pilon 56645..57102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1Ggra1625.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 56645..57102 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1.start1Ggra1625.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 56645..56647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1.CDS1Ggra1625.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 56645..56694 +
Ggra1625.t1.CDS2Ggra1625.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 56808..57102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1.exon1Ggra1625.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 56645..56694 +
Ggra1625.t1.exon2Ggra1625.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 56808..57102 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1.intron1Ggra1625.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 56695..56807 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1625.t1.stop1Ggra1625.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 57100..57102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1625.t1 ID=Ggra1625.t1|Name=Ggra1625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=115bp
MTRKRKVAPIALEKPRTKADGKEPDIAFKRQEPSAILRFGAEKLFAKEGL
AENVEGESKIKDTEGIKDSTPNDSEPTANDTKKEDKDENAEDRRVLDADE
IDELLARAPTDEAS*
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spliced messenger RNA

>Ggra1625.t1 ID=Ggra1625.t1|Name=Ggra1625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00000050_pilon:56645..57102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCGCAAGCGGAAAGTCGCGCCCATCGCATTGGAAAAACCAAGGAC
CAAAGCTGACGGAAAGGAACCGGATATTGCCTTTAAGAGGCAGGAACCAT
CGGCGATCCTTCGCTTTGGCGCGGAAAAACTTTTTGCTAAAGAAGGTCTT
GCAGAGAATGTAGAAGGTGAATCGAAGATCAAAGACACTGAAGGAATTAA
GGATAGCACTCCTAATGATTCTGAACCAACTGCGAACGACACTAAAAAGG
AGGACAAGGACGAGAACGCAGAAGATCGTCGTGTCCTTGATGCTGATGAA
ATCGACGAACTACTTGCTAGGGCTCCAACAGATGAGGCCTCTTAG
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protein sequence of Ggra1625.t1

>Ggra1625.t1 ID=Ggra1625.t1|Name=Ggra1625.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=115bp
MTRKRKVAPIALEKPRTKADGKEPDIAFKRQEPSAILRFGAEKLFAKEGL
AENVEGESKIKDTEGIKDSTPNDSEPTANDTKKEDKDENAEDRRVLDADE
IDELLARAPTDEAS*
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mRNA from alignment at tig00000050_pilon:56645..57102+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1625.t1 ID=Ggra1625.t1|Name=Ggra1625.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=458bp|location=Sequence derived from alignment at tig00000050_pilon:56645..57102+ (Gracilaria gracilis GNS1m male)
ATGACCCGCAAGCGGAAAGTCGCGCCCATCGCATTGGAAAAACCAAGGAC
GTGAAGGTGTTTCGCTTACTGAGCAGGGAGACGGTTGAAGAAGACATTCT
AGAGTGAGCGAAACGAAAGCGGGTTCTTGAGCATGTTGTGATTCATGGTG
TGGGGGGCGGAAGCAAAGCTGACGGAAAGGAACCGGATATTGCCTTTAAG
AGGCAGGAACCATCGGCGATCCTTCGCTTTGGCGCGGAAAAACTTTTTGC
TAAAGAAGGTCTTGCAGAGAATGTAGAAGGTGAATCGAAGATCAAAGACA
CTGAAGGAATTAAGGATAGCACTCCTAATGATTCTGAACCAACTGCGAAC
GACACTAAAAAGGAGGACAAGGACGAGAACGCAGAAGATCGTCGTGTCCT
TGATGCTGATGAAATCGACGAACTACTTGCTAGGGCTCCAACAGATGAGG
CCTCTTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:56645..57102+

>Ggra1625.t1 ID=Ggra1625.t1|Name=Ggra1625.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00000050_pilon:56645..57102+ (Gracilaria gracilis GNS1m male)
ATGACCCGCAAGCGGAAAGTCGCGCCCATCGCATTGGAAAAACCAAGGAC
CAAAGCTGACGGAAAGGAACCGGATATTGCCTTTAAGAGGCAGGAACCAT
CGGCGATCCTTCGCTTTGGCGCGGAAAAACTTTTTGCTAAAGAAGGTCTT
GCAGAGAATGTAGAAGGTGAATCGAAGATCAAAGACACTGAAGGAATTAA
GGATAGCACTCCTAATGATTCTGAACCAACTGCGAACGACACTAAAAAGG
AGGACAAGGACGAGAACGCAGAAGATCGTCGTGTCCTTGATGCTGATGAA
ATCGACGAACTACTTGCTAGGGCTCCAACAGATGAGGCCTCTTAG
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