Ggra1622.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1622.t1
Unique NameGgra1622.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:390..1652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01871T0
Preferred nameHAT1
PFAMsAcetyltransf_1,Hat1_N
Max annot lvl4751|Fungi
KEGG koko:K11303
KEGG Pathwayko05034,map05034
GOsGO:0000123,GO:0000228,GO:0000302,GO:0000785,GO:0000790,GO:0001558,GO:0003674,GO:0003682,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0008080,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010485,GO:0010556,GO:0010558,GO:0010570,GO:0010605,GO:0010629,GO:0016043,GO:0016407,GO:0016410,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030308,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034212,GO:0034599,GO:0034614,GO:0034641,GO:0036166,GO:0036211,GO:0040008,GO:0040029,GO:0042221,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043983,GO:0043995,GO:0043996,GO:0043997,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0060258,GO:0061733,GO:0065007,GO:0070013,GO:0070784,GO:0070785,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:1900428,GO:1900429,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902493,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2000220,GO:2000221,GO:2001141
Evalue4.95e-36
EggNOG OGsKOG2696@1|root,KOG2696@2759|Eukaryota,38YSJ@33154|Opisthokonta,3NWPI@4751|Fungi
EC2.3.1.48
DescriptionCatalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1622Ggra1622Gracilaria gracilis GNS1m malegenetig00000050_pilon 390..1652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1622.t1.stop1Ggra1622.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 390..392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1622.t1.CDS1Ggra1622.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 390..1652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1622.t1.exon1Ggra1622.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 390..1652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1622.t1.start1Ggra1622.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 1650..1652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1622.t1Ggra1622.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 390..1652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1622.t1 ID=Ggra1622.t1|Name=Ggra1622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MAGASPQPPARKRVRFDPAAAPDARGPALQARDCVQLRFVGADSVLPSSP
LDPYERHLTFTPSFLHQIVPHESVYGWHSLRVALYIHMPTLATWIDSVGE
RSEADPGAEATDVPALLSPFIKDGLCSSRAAFEAIMTAESSTLPFSNQVS
SYNGDGVRFGVYKEKFLSRDEQSNSVSPNSALLSFHHRMAFLMFIHIDDA
SFIDVDDERWELFAIARLENGRPVEFVAYSTVYPFSALTSGDGPMRFAER
IRISQVFVMPMFQRSGHGAKLLNAIYQDAQNREALQITVEDPSPGFRLLR
DVTDLRRAYDAGILDAELPLDLTEENNLMHTLGSKLLLTPGQARRCVEVH
QLRHTDRSDEEAYKKYRLWVKRRLFKANLETLDQYDKEERKEKLAEIYAD
LEMEYDTAILRIRYRSTNKR*
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spliced messenger RNA

>Ggra1622.t1 ID=Ggra1622.t1|Name=Ggra1622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000050_pilon:390..1652- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCGCTTCTCCACAGCCGCCCGCGCGGAAGCGCGTTCGATTCGA
CCCGGCGGCCGCGCCTGATGCTCGCGGGCCGGCCTTGCAGGCGCGCGATT
GCGTGCAGCTGCGCTTTGTTGGTGCAGATTCTGTGTTACCATCATCGCCA
CTCGATCCGTATGAGCGACATCTCACCTTCACGCCTTCGTTTCTGCATCA
GATCGTTCCACATGAGAGCGTATATGGATGGCATAGTCTTCGTGTCGCGC
TGTATATACATATGCCGACGCTTGCTACATGGATCGATAGCGTTGGCGAG
AGATCGGAGGCAGACCCCGGTGCCGAGGCCACCGATGTACCCGCACTTCT
TTCACCGTTTATCAAGGATGGCTTGTGTTCATCGCGAGCGGCCTTCGAAG
CCATCATGACCGCCGAGTCATCAACGCTCCCGTTCAGCAATCAGGTGTCT
TCATACAATGGCGACGGCGTTCGTTTCGGCGTCTACAAGGAGAAGTTTTT
GAGTCGCGACGAGCAGTCCAACTCGGTTTCCCCAAACTCGGCTCTGCTTT
CCTTTCACCATCGCATGGCTTTCCTAATGTTCATTCACATTGACGACGCT
TCCTTCATTGACGTTGATGACGAACGCTGGGAGCTGTTTGCTATTGCCCG
CTTGGAGAATGGCCGCCCAGTTGAGTTCGTGGCTTATTCAACCGTGTATC
CGTTCTCCGCACTTACCTCTGGAGATGGACCGATGCGATTTGCGGAGCGG
ATCCGTATCAGCCAAGTATTCGTCATGCCTATGTTTCAGCGCAGCGGGCA
TGGTGCTAAGCTGCTCAACGCCATCTACCAAGATGCGCAAAACAGAGAGG
CGTTGCAAATTACTGTTGAAGATCCTAGTCCCGGTTTCCGTCTTTTGCGC
GACGTTACTGACTTGCGACGTGCTTATGATGCGGGAATACTAGACGCCGA
ACTTCCATTGGATTTGACGGAGGAAAACAACCTTATGCACACTTTGGGAT
CAAAACTTTTGCTGACTCCTGGCCAGGCTCGACGCTGTGTCGAGGTCCAT
CAATTGCGGCATACTGACCGATCTGATGAGGAGGCGTATAAGAAGTATCG
CCTCTGGGTGAAGCGTCGACTGTTTAAAGCAAATCTTGAAACTCTCGATC
AGTATGACAAGGAAGAGCGCAAGGAGAAATTAGCTGAGATTTACGCTGAC
TTGGAGATGGAATACGACACAGCCATTCTTCGCATAAGATATCGCTCCAC
CAATAAACGATGA
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protein sequence of Ggra1622.t1

>Ggra1622.t1 ID=Ggra1622.t1|Name=Ggra1622.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MAGASPQPPARKRVRFDPAAAPDARGPALQARDCVQLRFVGADSVLPSSP
LDPYERHLTFTPSFLHQIVPHESVYGWHSLRVALYIHMPTLATWIDSVGE
RSEADPGAEATDVPALLSPFIKDGLCSSRAAFEAIMTAESSTLPFSNQVS
SYNGDGVRFGVYKEKFLSRDEQSNSVSPNSALLSFHHRMAFLMFIHIDDA
SFIDVDDERWELFAIARLENGRPVEFVAYSTVYPFSALTSGDGPMRFAER
IRISQVFVMPMFQRSGHGAKLLNAIYQDAQNREALQITVEDPSPGFRLLR
DVTDLRRAYDAGILDAELPLDLTEENNLMHTLGSKLLLTPGQARRCVEVH
QLRHTDRSDEEAYKKYRLWVKRRLFKANLETLDQYDKEERKEKLAEIYAD
LEMEYDTAILRIRYRSTNKR*
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mRNA from alignment at tig00000050_pilon:390..1652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1622.t1 ID=Ggra1622.t1|Name=Ggra1622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000050_pilon:390..1652- (Gracilaria gracilis GNS1m male)
ATGGCCGGCGCTTCTCCACAGCCGCCCGCGCGGAAGCGCGTTCGATTCGA
CCCGGCGGCCGCGCCTGATGCTCGCGGGCCGGCCTTGCAGGCGCGCGATT
GCGTGCAGCTGCGCTTTGTTGGTGCAGATTCTGTGTTACCATCATCGCCA
CTCGATCCGTATGAGCGACATCTCACCTTCACGCCTTCGTTTCTGCATCA
GATCGTTCCACATGAGAGCGTATATGGATGGCATAGTCTTCGTGTCGCGC
TGTATATACATATGCCGACGCTTGCTACATGGATCGATAGCGTTGGCGAG
AGATCGGAGGCAGACCCCGGTGCCGAGGCCACCGATGTACCCGCACTTCT
TTCACCGTTTATCAAGGATGGCTTGTGTTCATCGCGAGCGGCCTTCGAAG
CCATCATGACCGCCGAGTCATCAACGCTCCCGTTCAGCAATCAGGTGTCT
TCATACAATGGCGACGGCGTTCGTTTCGGCGTCTACAAGGAGAAGTTTTT
GAGTCGCGACGAGCAGTCCAACTCGGTTTCCCCAAACTCGGCTCTGCTTT
CCTTTCACCATCGCATGGCTTTCCTAATGTTCATTCACATTGACGACGCT
TCCTTCATTGACGTTGATGACGAACGCTGGGAGCTGTTTGCTATTGCCCG
CTTGGAGAATGGCCGCCCAGTTGAGTTCGTGGCTTATTCAACCGTGTATC
CGTTCTCCGCACTTACCTCTGGAGATGGACCGATGCGATTTGCGGAGCGG
ATCCGTATCAGCCAAGTATTCGTCATGCCTATGTTTCAGCGCAGCGGGCA
TGGTGCTAAGCTGCTCAACGCCATCTACCAAGATGCGCAAAACAGAGAGG
CGTTGCAAATTACTGTTGAAGATCCTAGTCCCGGTTTCCGTCTTTTGCGC
GACGTTACTGACTTGCGACGTGCTTATGATGCGGGAATACTAGACGCCGA
ACTTCCATTGGATTTGACGGAGGAAAACAACCTTATGCACACTTTGGGAT
CAAAACTTTTGCTGACTCCTGGCCAGGCTCGACGCTGTGTCGAGGTCCAT
CAATTGCGGCATACTGACCGATCTGATGAGGAGGCGTATAAGAAGTATCG
CCTCTGGGTGAAGCGTCGACTGTTTAAAGCAAATCTTGAAACTCTCGATC
AGTATGACAAGGAAGAGCGCAAGGAGAAATTAGCTGAGATTTACGCTGAC
TTGGAGATGGAATACGACACAGCCATTCTTCGCATAAGATATCGCTCCAC
CAATAAACGATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:390..1652-

>Ggra1622.t1 ID=Ggra1622.t1|Name=Ggra1622.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000050_pilon:390..1652- (Gracilaria gracilis GNS1m male)
ATGGCCGGCGCTTCTCCACAGCCGCCCGCGCGGAAGCGCGTTCGATTCGA
CCCGGCGGCCGCGCCTGATGCTCGCGGGCCGGCCTTGCAGGCGCGCGATT
GCGTGCAGCTGCGCTTTGTTGGTGCAGATTCTGTGTTACCATCATCGCCA
CTCGATCCGTATGAGCGACATCTCACCTTCACGCCTTCGTTTCTGCATCA
GATCGTTCCACATGAGAGCGTATATGGATGGCATAGTCTTCGTGTCGCGC
TGTATATACATATGCCGACGCTTGCTACATGGATCGATAGCGTTGGCGAG
AGATCGGAGGCAGACCCCGGTGCCGAGGCCACCGATGTACCCGCACTTCT
TTCACCGTTTATCAAGGATGGCTTGTGTTCATCGCGAGCGGCCTTCGAAG
CCATCATGACCGCCGAGTCATCAACGCTCCCGTTCAGCAATCAGGTGTCT
TCATACAATGGCGACGGCGTTCGTTTCGGCGTCTACAAGGAGAAGTTTTT
GAGTCGCGACGAGCAGTCCAACTCGGTTTCCCCAAACTCGGCTCTGCTTT
CCTTTCACCATCGCATGGCTTTCCTAATGTTCATTCACATTGACGACGCT
TCCTTCATTGACGTTGATGACGAACGCTGGGAGCTGTTTGCTATTGCCCG
CTTGGAGAATGGCCGCCCAGTTGAGTTCGTGGCTTATTCAACCGTGTATC
CGTTCTCCGCACTTACCTCTGGAGATGGACCGATGCGATTTGCGGAGCGG
ATCCGTATCAGCCAAGTATTCGTCATGCCTATGTTTCAGCGCAGCGGGCA
TGGTGCTAAGCTGCTCAACGCCATCTACCAAGATGCGCAAAACAGAGAGG
CGTTGCAAATTACTGTTGAAGATCCTAGTCCCGGTTTCCGTCTTTTGCGC
GACGTTACTGACTTGCGACGTGCTTATGATGCGGGAATACTAGACGCCGA
ACTTCCATTGGATTTGACGGAGGAAAACAACCTTATGCACACTTTGGGAT
CAAAACTTTTGCTGACTCCTGGCCAGGCTCGACGCTGTGTCGAGGTCCAT
CAATTGCGGCATACTGACCGATCTGATGAGGAGGCGTATAAGAAGTATCG
CCTCTGGGTGAAGCGTCGACTGTTTAAAGCAAATCTTGAAACTCTCGATC
AGTATGACAAGGAAGAGCGCAAGGAGAAATTAGCTGAGATTTACGCTGAC
TTGGAGATGGAATACGACACAGCCATTCTTCGCATAAGATATCGCTCCAC
CAATAAACGATGA
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