Ggra1621.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1621.t1
Unique NameGgra1621.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:351130..352269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX39225
PFAMsELFV_dehydrog,ELFV_dehydrog_N
Max annot lvl2759|Eukaryota
Evalue1.57e-51
EggNOG OGsCOG0334@1|root,KOG2250@2759|Eukaryota
Descriptionglutamate dehydrogenase [NAD(P) ] activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1621Ggra1621Gracilaria gracilis GNS1m malegenetig00000146_pilon 351130..352269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1621.t1.stop1Ggra1621.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 351130..351132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1621.t1.CDS1Ggra1621.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 351130..352269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1621.t1.exon1Ggra1621.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 351130..352269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1621.t1.start1Ggra1621.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 352267..352269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1621.t1Ggra1621.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 351130..352269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1621.t1 ID=Ggra1621.t1|Name=Ggra1621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MSNVSVRQFQVLGDVTIFVGYEQFLDDIDPTVASFFPANGGCRIMNYASE
MDAMNECRELSKVMSLKHQTFCTGFSGGKIVVRCQDHIKINREELMHEIF
NALSQLNGKMLTGCDLNTTTKDMKLLSDMSRKVNPENGYVLAATECKCEP
EEATAYGVVAAVQELSTLITPKGKLVTVLVLGIGNVGSKVASVLDRMPDF
QVLVADIHPGRAALAVPHAIDVSEEDWTMTDFDILAPCASSHLIDENIAR
NLTCQGICGSSNIPFVNDVAMEIIQRRKILFVPEAISSAGAVMEDSIEYY
EPHIFREIHPGYVYSFIASLIATKTRKFLRKLVQEPELSSYKTLKEVIAT
ETSSTPIGRIFRDWIAEQNPIHDVVIVGA*
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spliced messenger RNA

>Ggra1621.t1 ID=Ggra1621.t1|Name=Ggra1621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000146_pilon:351130..352269- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACGTTAGTGTTCGTCAATTTCAAGTCCTTGGAGATGTGACTAT
TTTCGTTGGATACGAGCAATTCCTAGATGATATTGACCCCACAGTCGCCT
CCTTTTTCCCAGCAAATGGTGGATGTCGTATCATGAACTACGCCTCCGAA
ATGGACGCCATGAACGAGTGCCGTGAGCTCAGCAAAGTGATGTCCCTTAA
GCACCAAACCTTCTGTACCGGGTTTTCTGGAGGCAAAATTGTCGTCCGAT
GTCAAGATCATATTAAAATCAATAGGGAGGAGCTCATGCACGAGATTTTC
AACGCTCTCTCACAATTGAACGGTAAGATGCTCACGGGGTGCGATTTGAA
CACCACTACGAAAGACATGAAGCTTCTCTCTGACATGAGTCGGAAGGTGA
ATCCCGAGAACGGTTATGTTCTTGCGGCAACGGAATGCAAATGCGAACCA
GAAGAAGCCACAGCTTATGGAGTTGTAGCCGCTGTTCAAGAACTTTCGAC
ACTCATCACACCCAAGGGGAAGCTCGTTACTGTCTTAGTCCTTGGCATCG
GAAATGTAGGATCGAAAGTCGCCTCTGTACTTGATCGAATGCCCGACTTT
CAGGTTTTGGTCGCCGATATTCATCCAGGTCGCGCGGCTTTAGCTGTGCC
CCATGCTATTGATGTATCTGAGGAAGATTGGACTATGACAGACTTTGATA
TCCTGGCTCCTTGCGCCAGTTCGCACCTTATCGATGAGAACATTGCTCGA
AATTTGACTTGTCAAGGTATCTGTGGCTCTTCAAACATTCCTTTCGTCAA
TGATGTTGCCATGGAGATTATTCAGAGGAGAAAAATTCTATTCGTTCCAG
AGGCCATTTCTTCAGCCGGAGCTGTCATGGAAGATTCAATTGAGTATTAT
GAGCCGCACATTTTCCGCGAAATCCATCCTGGCTACGTCTACAGCTTTAT
CGCTTCCTTGATAGCAACCAAGACCCGCAAGTTTCTCCGCAAGTTGGTTC
AGGAACCCGAACTTAGTTCCTACAAGACCTTGAAGGAAGTAATCGCGACA
GAGACAAGCTCCACCCCTATTGGTCGAATTTTTCGGGACTGGATTGCTGA
ACAGAATCCCATTCATGATGTTGTCATCGTTGGGGCCTGA
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protein sequence of Ggra1621.t1

>Ggra1621.t1 ID=Ggra1621.t1|Name=Ggra1621.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MSNVSVRQFQVLGDVTIFVGYEQFLDDIDPTVASFFPANGGCRIMNYASE
MDAMNECRELSKVMSLKHQTFCTGFSGGKIVVRCQDHIKINREELMHEIF
NALSQLNGKMLTGCDLNTTTKDMKLLSDMSRKVNPENGYVLAATECKCEP
EEATAYGVVAAVQELSTLITPKGKLVTVLVLGIGNVGSKVASVLDRMPDF
QVLVADIHPGRAALAVPHAIDVSEEDWTMTDFDILAPCASSHLIDENIAR
NLTCQGICGSSNIPFVNDVAMEIIQRRKILFVPEAISSAGAVMEDSIEYY
EPHIFREIHPGYVYSFIASLIATKTRKFLRKLVQEPELSSYKTLKEVIAT
ETSSTPIGRIFRDWIAEQNPIHDVVIVGA*
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mRNA from alignment at tig00000146_pilon:351130..352269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1621.t1 ID=Ggra1621.t1|Name=Ggra1621.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000146_pilon:351130..352269- (Gracilaria gracilis GNS1m male)
ATGAGCAACGTTAGTGTTCGTCAATTTCAAGTCCTTGGAGATGTGACTAT
TTTCGTTGGATACGAGCAATTCCTAGATGATATTGACCCCACAGTCGCCT
CCTTTTTCCCAGCAAATGGTGGATGTCGTATCATGAACTACGCCTCCGAA
ATGGACGCCATGAACGAGTGCCGTGAGCTCAGCAAAGTGATGTCCCTTAA
GCACCAAACCTTCTGTACCGGGTTTTCTGGAGGCAAAATTGTCGTCCGAT
GTCAAGATCATATTAAAATCAATAGGGAGGAGCTCATGCACGAGATTTTC
AACGCTCTCTCACAATTGAACGGTAAGATGCTCACGGGGTGCGATTTGAA
CACCACTACGAAAGACATGAAGCTTCTCTCTGACATGAGTCGGAAGGTGA
ATCCCGAGAACGGTTATGTTCTTGCGGCAACGGAATGCAAATGCGAACCA
GAAGAAGCCACAGCTTATGGAGTTGTAGCCGCTGTTCAAGAACTTTCGAC
ACTCATCACACCCAAGGGGAAGCTCGTTACTGTCTTAGTCCTTGGCATCG
GAAATGTAGGATCGAAAGTCGCCTCTGTACTTGATCGAATGCCCGACTTT
CAGGTTTTGGTCGCCGATATTCATCCAGGTCGCGCGGCTTTAGCTGTGCC
CCATGCTATTGATGTATCTGAGGAAGATTGGACTATGACAGACTTTGATA
TCCTGGCTCCTTGCGCCAGTTCGCACCTTATCGATGAGAACATTGCTCGA
AATTTGACTTGTCAAGGTATCTGTGGCTCTTCAAACATTCCTTTCGTCAA
TGATGTTGCCATGGAGATTATTCAGAGGAGAAAAATTCTATTCGTTCCAG
AGGCCATTTCTTCAGCCGGAGCTGTCATGGAAGATTCAATTGAGTATTAT
GAGCCGCACATTTTCCGCGAAATCCATCCTGGCTACGTCTACAGCTTTAT
CGCTTCCTTGATAGCAACCAAGACCCGCAAGTTTCTCCGCAAGTTGGTTC
AGGAACCCGAACTTAGTTCCTACAAGACCTTGAAGGAAGTAATCGCGACA
GAGACAAGCTCCACCCCTATTGGTCGAATTTTTCGGGACTGGATTGCTGA
ACAGAATCCCATTCATGATGTTGTCATCGTTGGGGCCTGA
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Coding sequence (CDS) from alignment at tig00000146_pilon:351130..352269-

>Ggra1621.t1 ID=Ggra1621.t1|Name=Ggra1621.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000146_pilon:351130..352269- (Gracilaria gracilis GNS1m male)
ATGAGCAACGTTAGTGTTCGTCAATTTCAAGTCCTTGGAGATGTGACTAT
TTTCGTTGGATACGAGCAATTCCTAGATGATATTGACCCCACAGTCGCCT
CCTTTTTCCCAGCAAATGGTGGATGTCGTATCATGAACTACGCCTCCGAA
ATGGACGCCATGAACGAGTGCCGTGAGCTCAGCAAAGTGATGTCCCTTAA
GCACCAAACCTTCTGTACCGGGTTTTCTGGAGGCAAAATTGTCGTCCGAT
GTCAAGATCATATTAAAATCAATAGGGAGGAGCTCATGCACGAGATTTTC
AACGCTCTCTCACAATTGAACGGTAAGATGCTCACGGGGTGCGATTTGAA
CACCACTACGAAAGACATGAAGCTTCTCTCTGACATGAGTCGGAAGGTGA
ATCCCGAGAACGGTTATGTTCTTGCGGCAACGGAATGCAAATGCGAACCA
GAAGAAGCCACAGCTTATGGAGTTGTAGCCGCTGTTCAAGAACTTTCGAC
ACTCATCACACCCAAGGGGAAGCTCGTTACTGTCTTAGTCCTTGGCATCG
GAAATGTAGGATCGAAAGTCGCCTCTGTACTTGATCGAATGCCCGACTTT
CAGGTTTTGGTCGCCGATATTCATCCAGGTCGCGCGGCTTTAGCTGTGCC
CCATGCTATTGATGTATCTGAGGAAGATTGGACTATGACAGACTTTGATA
TCCTGGCTCCTTGCGCCAGTTCGCACCTTATCGATGAGAACATTGCTCGA
AATTTGACTTGTCAAGGTATCTGTGGCTCTTCAAACATTCCTTTCGTCAA
TGATGTTGCCATGGAGATTATTCAGAGGAGAAAAATTCTATTCGTTCCAG
AGGCCATTTCTTCAGCCGGAGCTGTCATGGAAGATTCAATTGAGTATTAT
GAGCCGCACATTTTCCGCGAAATCCATCCTGGCTACGTCTACAGCTTTAT
CGCTTCCTTGATAGCAACCAAGACCCGCAAGTTTCTCCGCAAGTTGGTTC
AGGAACCCGAACTTAGTTCCTACAAGACCTTGAAGGAAGTAATCGCGACA
GAGACAAGCTCCACCCCTATTGGTCGAATTTTTCGGGACTGGATTGCTGA
ACAGAATCCCATTCATGATGTTGTCATCGTTGGGGCCTGA
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