Ggra1620.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1620.t1
Unique NameGgra1620.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:336810..337340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1620Ggra1620Gracilaria gracilis GNS1m malegenetig00000146_pilon 336810..337340 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1620.t1.start1Ggra1620.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 336810..336812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1620.t1.CDS1Ggra1620.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 336810..337340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1620.t1.exon1Ggra1620.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 336810..337340 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1620.t1.stop1Ggra1620.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 337338..337340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1620.t1Ggra1620.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 336810..337340 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1620.t1 ID=Ggra1620.t1|Name=Ggra1620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MLKVQEAMVDNIFLPHFSEKNECSPFPFPVPQLTAIERSVECDERSFEDL
NWVRSVNSKSKLKWNYYFHFKAVEISLTQVQLGHFSPFTHEDDCVASSFV
VRTKLPHSIKESAMIVALDEAQTLGLDLSDVYLRELFTDGKLGHSHEVDG
GVSVLVLEDAVMVTTVVGKMKPVQLD*
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spliced messenger RNA

>Ggra1620.t1 ID=Ggra1620.t1|Name=Ggra1620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:336810..337340+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAAAGTGCAAGAAGCAATGGTGGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAGCTCA
CTGCTATTGAAAGAAGCGTAGAGTGTGATGAAAGGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTACTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTCCCACACTCAATCAAAGAATCTGCTATGATTGTTGC
TTTGGATGAGGCGCAGACCCTTGGGCTAGACTTGTCAGATGTGTACTTGA
GAGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGACGCAGTGATGGTCACTACGGTGGT
GGGCAAAATGAAACCGGTACAATTGGACTAA
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protein sequence of Ggra1620.t1

>Ggra1620.t1 ID=Ggra1620.t1|Name=Ggra1620.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MLKVQEAMVDNIFLPHFSEKNECSPFPFPVPQLTAIERSVECDERSFEDL
NWVRSVNSKSKLKWNYYFHFKAVEISLTQVQLGHFSPFTHEDDCVASSFV
VRTKLPHSIKESAMIVALDEAQTLGLDLSDVYLRELFTDGKLGHSHEVDG
GVSVLVLEDAVMVTTVVGKMKPVQLD*
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mRNA from alignment at tig00000146_pilon:336810..337340+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1620.t1 ID=Ggra1620.t1|Name=Ggra1620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:336810..337340+ (Gracilaria gracilis GNS1m male)
ATGCTAAAAGTGCAAGAAGCAATGGTGGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAGCTCA
CTGCTATTGAAAGAAGCGTAGAGTGTGATGAAAGGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTACTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTCCCACACTCAATCAAAGAATCTGCTATGATTGTTGC
TTTGGATGAGGCGCAGACCCTTGGGCTAGACTTGTCAGATGTGTACTTGA
GAGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGACGCAGTGATGGTCACTACGGTGGT
GGGCAAAATGAAACCGGTACAATTGGACTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:336810..337340+

>Ggra1620.t1 ID=Ggra1620.t1|Name=Ggra1620.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:336810..337340+ (Gracilaria gracilis GNS1m male)
ATGCTAAAAGTGCAAGAAGCAATGGTGGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAGCTCA
CTGCTATTGAAAGAAGCGTAGAGTGTGATGAAAGGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTACTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTCCCACACTCAATCAAAGAATCTGCTATGATTGTTGC
TTTGGATGAGGCGCAGACCCTTGGGCTAGACTTGTCAGATGTGTACTTGA
GAGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGACGCAGTGATGGTCACTACGGTGGT
GGGCAAAATGAAACCGGTACAATTGGACTAA
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