Ggra1619.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1619.t2
Unique NameGgra1619.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:316726..317295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1619Ggra1619Gracilaria gracilis GNS1m malegenetig00000146_pilon 315748..317295 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1619.t2.start1Ggra1619.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 316726..316728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1619.t2.CDS1Ggra1619.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 316726..317295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1619.t2.exon1Ggra1619.t2.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 316726..317295 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1619.t2.stop1Ggra1619.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 317293..317295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1619.t2Ggra1619.t2Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 316726..317295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1619.t2 ID=Ggra1619.t2|Name=Ggra1619.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MALYFESKLLSMDASLSSRMVSKLTLRQIALWIMMAASEEGVGGLEEGIM
NRTVIGWEERTVATATGIVPISVAFLGSVWVFLLTSYMILRVMIAKKESR
SRSMWSQFWRQRGLQTSKQDMTAQVAEDLRSLGVQSASEADDVCIRLVRG
KDGKQTLRLLPSNICEASLRQALIQADSLEECDARPARG*
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spliced messenger RNA

>Ggra1619.t2 ID=Ggra1619.t2|Name=Ggra1619.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000146_pilon:316726..317295+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTGTACTTCGAGAGCAAGCTTTTGAGTATGGATGCTTCTCTTTC
AAGTCGGATGGTGTCCAAGCTGACACTACGACAAATCGCTCTTTGGATAA
TGATGGCGGCAAGTGAAGAAGGGGTTGGAGGTCTTGAGGAAGGAATCATG
AATCGAACAGTAATTGGATGGGAAGAAAGAACAGTAGCAACTGCTACAGG
TATTGTTCCTATAAGTGTCGCTTTCCTGGGGTCAGTATGGGTATTTTTGT
TGACATCATATATGATACTTCGCGTGATGATTGCGAAGAAAGAAAGTAGA
AGCCGTTCAATGTGGTCGCAGTTTTGGCGACAGCGGGGACTGCAGACTTC
GAAACAAGACATGACGGCACAGGTGGCCGAAGACCTTCGAAGTCTAGGTG
TTCAAAGTGCTTCAGAGGCGGATGACGTATGCATTCGACTTGTGCGCGGA
AAGGATGGCAAACAAACACTGCGGCTGTTGCCAAGCAACATTTGCGAAGC
ATCCCTACGACAAGCTCTAATACAGGCAGACAGTCTTGAGGAGTGCGATG
CTCGACCAGCACGCGGTTGA
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protein sequence of Ggra1619.t2

>Ggra1619.t2 ID=Ggra1619.t2|Name=Ggra1619.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MALYFESKLLSMDASLSSRMVSKLTLRQIALWIMMAASEEGVGGLEEGIM
NRTVIGWEERTVATATGIVPISVAFLGSVWVFLLTSYMILRVMIAKKESR
SRSMWSQFWRQRGLQTSKQDMTAQVAEDLRSLGVQSASEADDVCIRLVRG
KDGKQTLRLLPSNICEASLRQALIQADSLEECDARPARG*
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mRNA from alignment at tig00000146_pilon:316726..317295+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1619.t2 ID=Ggra1619.t2|Name=Ggra1619.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000146_pilon:316726..317295+ (Gracilaria gracilis GNS1m male)
ATGGCCTTGTACTTCGAGAGCAAGCTTTTGAGTATGGATGCTTCTCTTTC
AAGTCGGATGGTGTCCAAGCTGACACTACGACAAATCGCTCTTTGGATAA
TGATGGCGGCAAGTGAAGAAGGGGTTGGAGGTCTTGAGGAAGGAATCATG
AATCGAACAGTAATTGGATGGGAAGAAAGAACAGTAGCAACTGCTACAGG
TATTGTTCCTATAAGTGTCGCTTTCCTGGGGTCAGTATGGGTATTTTTGT
TGACATCATATATGATACTTCGCGTGATGATTGCGAAGAAAGAAAGTAGA
AGCCGTTCAATGTGGTCGCAGTTTTGGCGACAGCGGGGACTGCAGACTTC
GAAACAAGACATGACGGCACAGGTGGCCGAAGACCTTCGAAGTCTAGGTG
TTCAAAGTGCTTCAGAGGCGGATGACGTATGCATTCGACTTGTGCGCGGA
AAGGATGGCAAACAAACACTGCGGCTGTTGCCAAGCAACATTTGCGAAGC
ATCCCTACGACAAGCTCTAATACAGGCAGACAGTCTTGAGGAGTGCGATG
CTCGACCAGCACGCGGTTGA
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Coding sequence (CDS) from alignment at tig00000146_pilon:316726..317295+

>Ggra1619.t2 ID=Ggra1619.t2|Name=Ggra1619.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000146_pilon:316726..317295+ (Gracilaria gracilis GNS1m male)
ATGGCCTTGTACTTCGAGAGCAAGCTTTTGAGTATGGATGCTTCTCTTTC
AAGTCGGATGGTGTCCAAGCTGACACTACGACAAATCGCTCTTTGGATAA
TGATGGCGGCAAGTGAAGAAGGGGTTGGAGGTCTTGAGGAAGGAATCATG
AATCGAACAGTAATTGGATGGGAAGAAAGAACAGTAGCAACTGCTACAGG
TATTGTTCCTATAAGTGTCGCTTTCCTGGGGTCAGTATGGGTATTTTTGT
TGACATCATATATGATACTTCGCGTGATGATTGCGAAGAAAGAAAGTAGA
AGCCGTTCAATGTGGTCGCAGTTTTGGCGACAGCGGGGACTGCAGACTTC
GAAACAAGACATGACGGCACAGGTGGCCGAAGACCTTCGAAGTCTAGGTG
TTCAAAGTGCTTCAGAGGCGGATGACGTATGCATTCGACTTGTGCGCGGA
AAGGATGGCAAACAAACACTGCGGCTGTTGCCAAGCAACATTTGCGAAGC
ATCCCTACGACAAGCTCTAATACAGGCAGACAGTCTTGAGGAGTGCGATG
CTCGACCAGCACGCGGTTGA
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