Ggra1617.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1617.t1
Unique NameGgra1617.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:271046..271576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1617Ggra1617Gracilaria gracilis GNS1m malegenetig00000146_pilon 271046..271576 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1617.t1.stop1Ggra1617.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 271046..271048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1617.t1.CDS1Ggra1617.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 271046..271576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1617.t1.exon1Ggra1617.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 271046..271576 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1617.t1.start1Ggra1617.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 271574..271576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1617.t1Ggra1617.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 271046..271576 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1617.t1 ID=Ggra1617.t1|Name=Ggra1617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MLKVQEAMVDNIFLPHFSEKNECSPFPFPVPQLTAVERSVECDEKSFEDL
NWVRSVNSKSKLKWNLYFHFKAVEISLTQVQLGHFSPFTHEDDCVASSFV
VRTKLPHSIKESAMIVALDEAQTLGLDLSDVYLRELFTDGKLGHSHEVDG
GVSVLVLEDAVMVTTVVGKMKPVRLD*
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spliced messenger RNA

>Ggra1617.t1 ID=Ggra1617.t1|Name=Ggra1617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:271046..271576- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAAAGTGCAAGAAGCAATGGTCGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAACTCA
CTGCTGTTGAAAGAAGCGTAGAGTGTGATGAAAAGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTTGTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTTCCACACTCAATCAAAGAATCTGCAATGATTGTTGC
TTTGGATGAGGCGCAGACTCTTGGCCTAGACTTGTCAGATGTGTACTTGA
GGGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGATGCAGTGATGGTCACTACGGTGGT
TGGAAAAATGAAACCAGTACGATTGGACTAA
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protein sequence of Ggra1617.t1

>Ggra1617.t1 ID=Ggra1617.t1|Name=Ggra1617.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MLKVQEAMVDNIFLPHFSEKNECSPFPFPVPQLTAVERSVECDEKSFEDL
NWVRSVNSKSKLKWNLYFHFKAVEISLTQVQLGHFSPFTHEDDCVASSFV
VRTKLPHSIKESAMIVALDEAQTLGLDLSDVYLRELFTDGKLGHSHEVDG
GVSVLVLEDAVMVTTVVGKMKPVRLD*
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mRNA from alignment at tig00000146_pilon:271046..271576-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1617.t1 ID=Ggra1617.t1|Name=Ggra1617.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:271046..271576- (Gracilaria gracilis GNS1m male)
ATGCTAAAAGTGCAAGAAGCAATGGTCGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAACTCA
CTGCTGTTGAAAGAAGCGTAGAGTGTGATGAAAAGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTTGTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTTCCACACTCAATCAAAGAATCTGCAATGATTGTTGC
TTTGGATGAGGCGCAGACTCTTGGCCTAGACTTGTCAGATGTGTACTTGA
GGGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGATGCAGTGATGGTCACTACGGTGGT
TGGAAAAATGAAACCAGTACGATTGGACTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:271046..271576-

>Ggra1617.t1 ID=Ggra1617.t1|Name=Ggra1617.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000146_pilon:271046..271576- (Gracilaria gracilis GNS1m male)
ATGCTAAAAGTGCAAGAAGCAATGGTCGACAATATTTTTCTGCCTCATTT
CTCGGAGAAGAATGAGTGTTCTCCTTTTCCATTTCCTGTCCCACAACTCA
CTGCTGTTGAAAGAAGCGTAGAGTGTGATGAAAAGAGTTTCGAAGATCTC
AACTGGGTACGAAGCGTCAATTCAAAGTCCAAGTTGAAATGGAACTTGTA
TTTTCATTTCAAGGCTGTTGAAATCTCCCTCACACAGGTTCAACTGGGAC
ACTTTTCGCCATTTACTCATGAGGACGATTGTGTGGCGTCATCTTTTGTT
GTACGCACAAAACTTCCACACTCAATCAAAGAATCTGCAATGATTGTTGC
TTTGGATGAGGCGCAGACTCTTGGCCTAGACTTGTCAGATGTGTACTTGA
GGGAGTTGTTTACTGACGGAAAGCTCGGACATAGTCACGAAGTTGATGGT
GGTGTTTCGGTTTTGGTTCTTGAAGATGCAGTGATGGTCACTACGGTGGT
TGGAAAAATGAAACCAGTACGATTGGACTAA
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