Ggra1616.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1616.t1
Unique NameGgra1616.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:237116..240126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1616Ggra1616Gracilaria gracilis GNS1m malegenetig00000146_pilon 237116..240126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1Ggra1616.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 237116..240126 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1.stop1Ggra1616.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 237116..237118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1.CDS1Ggra1616.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 237116..238086 -
Ggra1616.t1.CDS2Ggra1616.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000146_pilon 239982..240126 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1.exon1Ggra1616.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 237116..238086 -
Ggra1616.t1.exon2Ggra1616.t1.exon2Gracilaria gracilis GNS1m maleexontig00000146_pilon 239982..240126 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1.intron1Ggra1616.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000146_pilon 238087..239981 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1616.t1.start1Ggra1616.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 240124..240126 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1616.t1 ID=Ggra1616.t1|Name=Ggra1616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MSYDYYKAQCFHESDPYIEFQNPFQPEEGVETAEPTSDLSFDSGFDEDSS
DLAVVLLIDASESTKPRLGAVKNELVSFVRQLNGSAHVSVVVYGGENSFD
GKGMKVLSNAEEDVRYALNALEKIPVLPDGPRTSLTALYSLQRYSQQFSL
RQDRVIIMLIGDTPGREPDCANGFDRIGISRSLFYFSNAFSVIPVSLGEP
GLDAALTSMQPCANGSGRPHPQAVGAGQASKIAEETNGVVVDSITAAGLL
EAVDVVRRKPNRFHRSEPGAHIFIYTQSFNPPDWYYWYPHVQPRINGCED
KVIVNMTGIPSFLSEPVQTSGKVKLDLPDGICQKGPFNCTIRIMDATMGY
QPLSHWVFPTTYYKDISVQAC*
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spliced messenger RNA

>Ggra1616.t1 ID=Ggra1616.t1|Name=Ggra1616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000146_pilon:237116..240126- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTATGACTATTATAAGGCTCAATGTTTTCACGAGTCTGACCCCTA
TATTGAATTTCAAAACCCATTTCAGCCTGAAGAAGGTGTCGAGACTGCAG
AACCGACCTCCGATCTTTCCTTCGATTCAGGATTTGATGAAGACAGTAGT
GATCTGGCCGTGGTTCTTCTAATCGATGCAAGTGAGTCAACGAAACCTAG
ATTGGGTGCTGTGAAGAATGAATTGGTCTCATTTGTTAGGCAGTTGAACG
GTAGTGCTCACGTCAGTGTGGTCGTGTATGGTGGAGAGAATTCATTTGAT
GGAAAGGGAATGAAAGTGCTTTCCAATGCTGAGGAAGATGTTCGGTATGC
TTTAAATGCTTTGGAGAAAATCCCGGTTTTACCAGACGGACCCCGCACAT
CCCTGACAGCCCTCTATTCCCTACAACGTTACTCACAGCAGTTCTCGCTT
CGTCAGGACAGAGTGATCATTATGCTCATCGGCGACACCCCAGGGCGGGA
GCCTGACTGTGCAAATGGGTTTGATCGCATTGGAATTTCCAGATCCTTAT
TCTACTTTAGTAACGCATTCTCAGTGATACCGGTAAGCTTAGGAGAACCT
GGACTAGACGCTGCTTTAACTTCGATGCAGCCTTGCGCAAACGGTTCTGG
CCGCCCCCATCCACAAGCTGTAGGGGCTGGTCAAGCGAGCAAGATTGCGG
AGGAAACAAACGGTGTGGTTGTCGACTCCATCACTGCTGCTGGTCTTCTA
GAAGCTGTTGACGTTGTGCGACGAAAGCCAAACAGATTTCACCGATCTGA
GCCTGGGGCACATATCTTCATATACACACAAAGCTTCAATCCTCCCGACT
GGTACTATTGGTATCCGCATGTCCAACCCCGGATTAATGGATGTGAAGAC
AAGGTGATTGTCAATATGACCGGAATCCCATCATTCTTGAGCGAACCTGT
ACAGACTTCGGGGAAGGTGAAACTTGATCTTCCGGATGGTATTTGTCAGA
AAGGCCCGTTCAATTGCACTATTCGTATTATGGATGCCACCATGGGATAC
CAGCCTTTAAGTCATTGGGTGTTCCCTACCACGTACTACAAGGACATTTC
TGTGCAGGCTTGCTAA
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protein sequence of Ggra1616.t1

>Ggra1616.t1 ID=Ggra1616.t1|Name=Ggra1616.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MSYDYYKAQCFHESDPYIEFQNPFQPEEGVETAEPTSDLSFDSGFDEDSS
DLAVVLLIDASESTKPRLGAVKNELVSFVRQLNGSAHVSVVVYGGENSFD
GKGMKVLSNAEEDVRYALNALEKIPVLPDGPRTSLTALYSLQRYSQQFSL
RQDRVIIMLIGDTPGREPDCANGFDRIGISRSLFYFSNAFSVIPVSLGEP
GLDAALTSMQPCANGSGRPHPQAVGAGQASKIAEETNGVVVDSITAAGLL
EAVDVVRRKPNRFHRSEPGAHIFIYTQSFNPPDWYYWYPHVQPRINGCED
KVIVNMTGIPSFLSEPVQTSGKVKLDLPDGICQKGPFNCTIRIMDATMGY
QPLSHWVFPTTYYKDISVQAC*
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mRNA from alignment at tig00000146_pilon:237116..240126-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1616.t1 ID=Ggra1616.t1|Name=Ggra1616.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3011bp|location=Sequence derived from alignment at tig00000146_pilon:237116..240126- (Gracilaria gracilis GNS1m male)
ATGTCTTATGACTATTATAAGGCTCAATGTTTTCACGAGTCTGACCCCTA
TATTGAATTTCAAAACCCATTTCAGCCTGAAGAAGGTGTCGAGACTGCAG
AACCGACCTCCGATCTTTCCTTCGATTCAGGATTTGATGAAGACAGTATT
CTAGAAATCGCCACGAGTGAAAATACCCTTCCGACACCAACGTTCATGAT
CTGAAACAAGAACGGGTTACTGTTTCACTTTCCCTCTTGAATCAGAATGG
AAAGACAAAATCGCCGTATTAGCATTCTATTTCTTTATAGAATAGCAATA
AGTTACTCAAAGAGAGAGAGAGGCCTTTATTTCAGGAAATAAGGACAAGC
GTTAATCACGCCGACGTGGCAGCGTGTGGGTGCATGTGAAGCGTCCAGCG
CCGACGATTTACGGCAGCAGCTGTCAATTGTAGAACAATTCGTTCTAAGC
GCAGGACCAAGGAGTGGTACTCATTGACGGGGTTTGAGCCGCGTACGTTG
CTGGCGTACTCCGCAACGCGGCGAGAAAAGCGTCTTCCGGACTCTTCGAG
GCCGCCGTGAACGTCGAAGCCGAACGGAACGAATTCGACGTTATTGGTGG
CACAAAGCGCGCTGTACTTCGAGCTTTTAGACGCCTCTGCCTTTGTGGCT
GCAGCGGCTGCCGTTTTGGACGCTGCAACCGCAAATCCTCTGCTGTTGGG
GCTAACCACGCAAAGAAGCATCAGCCTTCCCTCTAAACAACGACAATTTT
AACATCCTAGCATTGCCATGTGAGCTCTATTATGAATGTTCATGAGTCCT
TTGAAGACTGAAAACTGGCCGAGTCCACACAATCTCCTTTTCGTGGTTTA
GATATTTGTTTTCTGATCTTCGCTTTAGAGTTTCATGCGCTCATTTCGGA
GTTACCAGACGAGTTTGAAAATATTCTTACTCTAAGAGAAGCAGAAACAG
CTTTGGCACAGATATATGTGGGACATACACCAAGTTTGCACCCTCTTGGA
TCTCATTTATTTGGAAAGAAGATGGTTTGTAACTGTAGGCCTGGTGTTCT
GAATGATGTGAACCACTACCTTCTCAGATGCCCTAAGAGAAACTTGTCAA
GACGCTTGTGTCTACCTTCAAGTCGTGAACGCCAAGACAAATCCGTTTCT
AGTATTGTTAGAAAATGGCCCGTTAGAGTGTTGGCCTTTCTGGTGAGAGA
GCGTTTTTTTGAACAGAAACGTTCTGCACCAAGCCATAATTGAGCTAGTG
CACTCATAAACAGAGAGAGAGAGAGAGTTTCATGTCTCCTAGCCTTCTCC
TTCACTGCTGTACATCTTCAGCCTGAGCCGGACATCTTGTTCATATGCGT
TGTTTTAAGTTAGGCTTTCATACATTTTATTACAAATGATCTAATTTGAG
CTGGAACGCAGTGCAGCTTATCCGAGACTCCTGCTCAAGACATATTCGCA
ACAAGAAGAACCATATCGTGGAGCAATTTTCGACAGTGGCATGGAACTTG
TCTGATTGATCTTTTGTTCACGAGCCCCAGCATGACAATAGAGACGATGA
ACTTGGAGAATGACCATGAGAAGTCAAGGACCACAATAAGCAACGATATA
AAAGACGGAATCATTTCGTATCTTGTCCTGTTCCCTGTCCTTTCGCTATC
CACCTACCGTCCTCTTGAAAAAAGGACCGAAGATGGATTTTTCTCCTCCA
ACCCTGTTTTTGGCTCTTTTTTTGCTCTTGGCCTCACTATCTTCCGCCGA
CTATGTCAATGAGGATCGCAGTGGATTAACTTGTCGAAACATGAGAACAT
TTCCATTCGCCTCCTGCGATCCCCACTGCACTACCTACTCTCTAGACGTG
CACCGACAATGCCAGGCCAAGGGACAATTCGGATGCCTCTATAGAAGTTG
TTCAGATCATGACTTTCAATGTGCCTTCGATCCTCAGACTGGAGTAAGCA
ACAGCTGCGCAAATGGAGAAGTTCAAGTCCGAGAGGTTACCCTCTCTCCT
AAGTTCCCTGTGGAATTCGATCTTGCTGTCAACCTTAAAGGTAGTGATCT
GGCCGTGGTTCTTCTAATCGATGCAAGTGAGTCAACGAAACCTAGATTGG
GTGCTGTGAAGAATGAATTGGTCTCATTTGTTAGGCAGTTGAACGGTAGT
GCTCACGTCAGTGTGGTCGTGTATGGTGGAGAGAATTCATTTGATGGAAA
GGGAATGAAAGTGCTTTCCAATGCTGAGGAAGATGTTCGGTATGCTTTAA
ATGCTTTGGAGAAAATCCCGGTTTTACCAGACGGACCCCGCACATCCCTG
ACAGCCCTCTATTCCCTACAACGTTACTCACAGCAGTTCTCGCTTCGTCA
GGACAGAGTGATCATTATGCTCATCGGCGACACCCCAGGGCGGGAGCCTG
ACTGTGCAAATGGGTTTGATCGCATTGGAATTTCCAGATCCTTATTCTAC
TTTAGTAACGCATTCTCAGTGATACCGGTAAGCTTAGGAGAACCTGGACT
AGACGCTGCTTTAACTTCGATGCAGCCTTGCGCAAACGGTTCTGGCCGCC
CCCATCCACAAGCTGTAGGGGCTGGTCAAGCGAGCAAGATTGCGGAGGAA
ACAAACGGTGTGGTTGTCGACTCCATCACTGCTGCTGGTCTTCTAGAAGC
TGTTGACGTTGTGCGACGAAAGCCAAACAGATTTCACCGATCTGAGCCTG
GGGCACATATCTTCATATACACACAAAGCTTCAATCCTCCCGACTGGTAC
TATTGGTATCCGCATGTCCAACCCCGGATTAATGGATGTGAAGACAAGGT
GATTGTCAATATGACCGGAATCCCATCATTCTTGAGCGAACCTGTACAGA
CTTCGGGGAAGGTGAAACTTGATCTTCCGGATGGTATTTGTCAGAAAGGC
CCGTTCAATTGCACTATTCGTATTATGGATGCCACCATGGGATACCAGCC
TTTAAGTCATTGGGTGTTCCCTACCACGTACTACAAGGACATTTCTGTGC
AGGCTTGCTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:237116..240126-

>Ggra1616.t1 ID=Ggra1616.t1|Name=Ggra1616.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000146_pilon:237116..240126- (Gracilaria gracilis GNS1m male)
ATGTCTTATGACTATTATAAGGCTCAATGTTTTCACGAGTCTGACCCCTA
TATTGAATTTCAAAACCCATTTCAGCCTGAAGAAGGTGTCGAGACTGCAG
AACCGACCTCCGATCTTTCCTTCGATTCAGGATTTGATGAAGACAGTAGT
GATCTGGCCGTGGTTCTTCTAATCGATGCAAGTGAGTCAACGAAACCTAG
ATTGGGTGCTGTGAAGAATGAATTGGTCTCATTTGTTAGGCAGTTGAACG
GTAGTGCTCACGTCAGTGTGGTCGTGTATGGTGGAGAGAATTCATTTGAT
GGAAAGGGAATGAAAGTGCTTTCCAATGCTGAGGAAGATGTTCGGTATGC
TTTAAATGCTTTGGAGAAAATCCCGGTTTTACCAGACGGACCCCGCACAT
CCCTGACAGCCCTCTATTCCCTACAACGTTACTCACAGCAGTTCTCGCTT
CGTCAGGACAGAGTGATCATTATGCTCATCGGCGACACCCCAGGGCGGGA
GCCTGACTGTGCAAATGGGTTTGATCGCATTGGAATTTCCAGATCCTTAT
TCTACTTTAGTAACGCATTCTCAGTGATACCGGTAAGCTTAGGAGAACCT
GGACTAGACGCTGCTTTAACTTCGATGCAGCCTTGCGCAAACGGTTCTGG
CCGCCCCCATCCACAAGCTGTAGGGGCTGGTCAAGCGAGCAAGATTGCGG
AGGAAACAAACGGTGTGGTTGTCGACTCCATCACTGCTGCTGGTCTTCTA
GAAGCTGTTGACGTTGTGCGACGAAAGCCAAACAGATTTCACCGATCTGA
GCCTGGGGCACATATCTTCATATACACACAAAGCTTCAATCCTCCCGACT
GGTACTATTGGTATCCGCATGTCCAACCCCGGATTAATGGATGTGAAGAC
AAGGTGATTGTCAATATGACCGGAATCCCATCATTCTTGAGCGAACCTGT
ACAGACTTCGGGGAAGGTGAAACTTGATCTTCCGGATGGTATTTGTCAGA
AAGGCCCGTTCAATTGCACTATTCGTATTATGGATGCCACCATGGGATAC
CAGCCTTTAAGTCATTGGGTGTTCCCTACCACGTACTACAAGGACATTTC
TGTGCAGGCTTGCTAA
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