Ggra1612.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1612.t1
Unique NameGgra1612.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:112935..113417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1612Ggra1612Gracilaria gracilis GNS1m malegenetig00000146_pilon 112935..113417 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1612.t1.stop1Ggra1612.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 112935..112937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1612.t1.CDS1Ggra1612.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 112935..113417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1612.t1.exon1Ggra1612.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 112935..113417 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1612.t1.start1Ggra1612.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 113415..113417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1612.t1Ggra1612.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 112935..113417 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1612.t1 ID=Ggra1612.t1|Name=Ggra1612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MKSFGVVLIFLTAVTFGGQAQASSQDTSVGNGQTDSVIVLGARAKRLQDE
VIQYNVDSVNKWMGGEAVSMPKYVGEIVRFAKLAVNVSLQDALDGGRNGE
DMVGTMRASAVCKACQLSCASAAAVCTTGCAFASVYRPICVGAWAATNLG
CVSACTVLAC*
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spliced messenger RNA

>Ggra1612.t1 ID=Ggra1612.t1|Name=Ggra1612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000146_pilon:112935..113417- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCGTTCGGTGTTGTGCTTATTTTTCTTACCGCTGTCACTTTTGG
AGGACAAGCCCAGGCGTCGTCGCAAGACACCTCTGTTGGTAATGGGCAAA
CTGATTCTGTGATAGTATTGGGTGCTCGGGCCAAGCGTTTGCAAGATGAA
GTGATTCAATATAACGTGGATTCTGTGAATAAGTGGATGGGAGGAGAAGC
AGTGTCTATGCCAAAGTACGTGGGTGAGATTGTGCGGTTTGCTAAACTGG
CGGTGAATGTGTCGTTGCAGGACGCACTTGATGGCGGTCGGAATGGTGAG
GATATGGTCGGTACTATGAGGGCATCTGCAGTTTGCAAGGCTTGTCAGCT
GAGCTGTGCCAGTGCAGCTGCTGTGTGCACTACTGGATGTGCTTTTGCCA
GCGTGTATAGGCCTATCTGCGTTGGTGCTTGGGCTGCCACAAACTTGGGT
TGCGTCAGCGCTTGTACTGTATTGGCTTGCTAA
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protein sequence of Ggra1612.t1

>Ggra1612.t1 ID=Ggra1612.t1|Name=Ggra1612.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MKSFGVVLIFLTAVTFGGQAQASSQDTSVGNGQTDSVIVLGARAKRLQDE
VIQYNVDSVNKWMGGEAVSMPKYVGEIVRFAKLAVNVSLQDALDGGRNGE
DMVGTMRASAVCKACQLSCASAAAVCTTGCAFASVYRPICVGAWAATNLG
CVSACTVLAC*
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mRNA from alignment at tig00000146_pilon:112935..113417-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1612.t1 ID=Ggra1612.t1|Name=Ggra1612.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000146_pilon:112935..113417- (Gracilaria gracilis GNS1m male)
ATGAAGTCGTTCGGTGTTGTGCTTATTTTTCTTACCGCTGTCACTTTTGG
AGGACAAGCCCAGGCGTCGTCGCAAGACACCTCTGTTGGTAATGGGCAAA
CTGATTCTGTGATAGTATTGGGTGCTCGGGCCAAGCGTTTGCAAGATGAA
GTGATTCAATATAACGTGGATTCTGTGAATAAGTGGATGGGAGGAGAAGC
AGTGTCTATGCCAAAGTACGTGGGTGAGATTGTGCGGTTTGCTAAACTGG
CGGTGAATGTGTCGTTGCAGGACGCACTTGATGGCGGTCGGAATGGTGAG
GATATGGTCGGTACTATGAGGGCATCTGCAGTTTGCAAGGCTTGTCAGCT
GAGCTGTGCCAGTGCAGCTGCTGTGTGCACTACTGGATGTGCTTTTGCCA
GCGTGTATAGGCCTATCTGCGTTGGTGCTTGGGCTGCCACAAACTTGGGT
TGCGTCAGCGCTTGTACTGTATTGGCTTGCTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:112935..113417-

>Ggra1612.t1 ID=Ggra1612.t1|Name=Ggra1612.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000146_pilon:112935..113417- (Gracilaria gracilis GNS1m male)
ATGAAGTCGTTCGGTGTTGTGCTTATTTTTCTTACCGCTGTCACTTTTGG
AGGACAAGCCCAGGCGTCGTCGCAAGACACCTCTGTTGGTAATGGGCAAA
CTGATTCTGTGATAGTATTGGGTGCTCGGGCCAAGCGTTTGCAAGATGAA
GTGATTCAATATAACGTGGATTCTGTGAATAAGTGGATGGGAGGAGAAGC
AGTGTCTATGCCAAAGTACGTGGGTGAGATTGTGCGGTTTGCTAAACTGG
CGGTGAATGTGTCGTTGCAGGACGCACTTGATGGCGGTCGGAATGGTGAG
GATATGGTCGGTACTATGAGGGCATCTGCAGTTTGCAAGGCTTGTCAGCT
GAGCTGTGCCAGTGCAGCTGCTGTGTGCACTACTGGATGTGCTTTTGCCA
GCGTGTATAGGCCTATCTGCGTTGGTGCTTGGGCTGCCACAAACTTGGGT
TGCGTCAGCGCTTGTACTGTATTGGCTTGCTAA
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