Ggra1611.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1611.t1
Unique NameGgra1611.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:110704..111705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1611Ggra1611Gracilaria gracilis GNS1m malegenetig00000146_pilon 110704..111705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1Ggra1611.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 110704..111705 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1.start1Ggra1611.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 110704..110706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1.CDS1Ggra1611.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 110704..111151 +
Ggra1611.t1.CDS2Ggra1611.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000146_pilon 111245..111705 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1.exon1Ggra1611.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 110704..111151 +
Ggra1611.t1.exon2Ggra1611.t1.exon2Gracilaria gracilis GNS1m maleexontig00000146_pilon 111245..111705 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1.intron1Ggra1611.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000146_pilon 111152..111244 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1611.t1.stop1Ggra1611.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 111703..111705 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1611.t1 ID=Ggra1611.t1|Name=Ggra1611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MTLLCLRRFFYFSTLLSFFIAATIPHAYAKSCCELTEQQLQAMRGRSDSC
PSSSRMATLTKCMECPPNTCRVGLLCYCPGAFLSTPSRQRDCEDSFLSVW
PQSIGKEDRFWRSCAPNFEPPEGSTTSCCDMTEDQLEAMVGTSDICPSSG
SSSRQRQCADSFGEPWPKSIGMEDMDWRSCNNSAQPVSVGGTTTDEGTTT
DGGTSGVGDSGDNQGSSVGGSTSGESTSNTATATSSGSKTETTVNVDGSS
SQNSGVQEENSLTTLEIVGIVAGVVSAVVTVIGSIAALKKRKQKDKHKIV
GA*
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spliced messenger RNA

>Ggra1611.t1 ID=Ggra1611.t1|Name=Ggra1611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000146_pilon:110704..111705+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTATTGTGTCTTCGTCGCTTTTTCTACTTTTCCACACTGCTCTC
CTTCTTTATCGCCGCCACCATTCCCCATGCGTACGCGAAAAGCTGCTGCG
AGCTTACCGAGCAGCAGCTGCAAGCCATGCGCGGTCGCAGCGACTCCTGC
CCTTCCTCATCTAGGATGGCAACGCTCACCAAATGTATGGAGTGTCCGCC
GAACACCTGTCGGGTAGGATTGCTATGCTACTGTCCGGGTGCATTTCTTT
CGACTCCGTCACGGCAACGAGATTGTGAAGACAGCTTTCTCAGCGTGTGG
CCCCAATCCATCGGTAAAGAAGACCGATTTTGGAGGAGTTGTGCGCCAAA
CTTTGAGCCGCCTGAGGGATCGACTACGTCATGTTGCGATATGACTGAAG
ATCAACTGGAAGCCATGGTTGGTACATCCGACATCTGCCCCTCGAGCGGC
AGTTCTTCTCGTCAACGACAGTGTGCAGATTCGTTTGGAGAACCGTGGCC
GAAATCCATCGGAATGGAAGACATGGACTGGCGTAGCTGCAACAATAGCG
CGCAACCTGTTTCGGTTGGTGGCACAACCACAGATGAAGGCACCACCACA
GACGGGGGTACCTCTGGAGTAGGAGATTCGGGGGATAATCAAGGTTCTTC
TGTAGGTGGCTCTACTTCTGGGGAATCGACGTCCAACACTGCTACGGCCA
CTTCAAGCGGATCCAAAACAGAGACGACAGTCAATGTTGATGGATCGAGC
TCGCAGAATTCAGGAGTGCAGGAGGAAAACTCACTGACGACGTTGGAAAT
TGTTGGCATCGTCGCAGGTGTAGTGAGCGCGGTTGTCACTGTAATTGGTT
CGATAGCTGCGCTCAAGAAACGAAAGCAAAAAGACAAACACAAGATCGTT
GGTGCATGA
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protein sequence of Ggra1611.t1

>Ggra1611.t1 ID=Ggra1611.t1|Name=Ggra1611.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MTLLCLRRFFYFSTLLSFFIAATIPHAYAKSCCELTEQQLQAMRGRSDSC
PSSSRMATLTKCMECPPNTCRVGLLCYCPGAFLSTPSRQRDCEDSFLSVW
PQSIGKEDRFWRSCAPNFEPPEGSTTSCCDMTEDQLEAMVGTSDICPSSG
SSSRQRQCADSFGEPWPKSIGMEDMDWRSCNNSAQPVSVGGTTTDEGTTT
DGGTSGVGDSGDNQGSSVGGSTSGESTSNTATATSSGSKTETTVNVDGSS
SQNSGVQEENSLTTLEIVGIVAGVVSAVVTVIGSIAALKKRKQKDKHKIV
GA*
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mRNA from alignment at tig00000146_pilon:110704..111705+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1611.t1 ID=Ggra1611.t1|Name=Ggra1611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000146_pilon:110704..111705+ (Gracilaria gracilis GNS1m male)
ATGACCTTATTGTGTCTTCGTCGCTTTTTCTACTTTTCCACACTGCTCTC
CTTCTTTATCGCCGCCACCATTCCCCATGCGTACGCGAAAAGCTGCTGCG
AGCTTACCGAGCAGCAGCTGCAAGCCATGCGCGGTCGCAGCGACTCCTGC
CCTTCCTCATCTAGGATGGCAACGCTCACCAAATGTATGGAGTGTCCGCC
GAACACCTGTCGGGTAGGATTGCTATGCTACTGTCCGGGTGCATTTCTTT
CGACTCCGTCACGGCAACGAGATTGTGAAGACAGCTTTCTCAGCGTGTGG
CCCCAATCCATCGGTAAAGAAGACCGATTTTGGAGGAGTTGTGCGCCAAA
CTTTGAGCCGCCTGAGGGATCGACTACGTCATGTTGCGATATGACTGAAG
ATCAACTGGAAGCCATGGTTGGTACATCCGACATCTGCCCCTCGAGCGGT
AGGGTTGAAACGCTGGCGGCGAAATGCCTCCCGTGTCCGCCTGGAAGCTG
TCGACTGAACTCTTTATGTTATTGTCCTTCGCGTTTCGCAGGCAGTTCTT
CTCGTCAACGACAGTGTGCAGATTCGTTTGGAGAACCGTGGCCGAAATCC
ATCGGAATGGAAGACATGGACTGGCGTAGCTGCAACAATAGCGCGCAACC
TGTTTCGGTTGGTGGCACAACCACAGATGAAGGCACCACCACAGACGGGG
GTACCTCTGGAGTAGGAGATTCGGGGGATAATCAAGGTTCTTCTGTAGGT
GGCTCTACTTCTGGGGAATCGACGTCCAACACTGCTACGGCCACTTCAAG
CGGATCCAAAACAGAGACGACAGTCAATGTTGATGGATCGAGCTCGCAGA
ATTCAGGAGTGCAGGAGGAAAACTCACTGACGACGTTGGAAATTGTTGGC
ATCGTCGCAGGTGTAGTGAGCGCGGTTGTCACTGTAATTGGTTCGATAGC
TGCGCTCAAGAAACGAAAGCAAAAAGACAAACACAAGATCGTTGGTGCAT
GA
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Coding sequence (CDS) from alignment at tig00000146_pilon:110704..111705+

>Ggra1611.t1 ID=Ggra1611.t1|Name=Ggra1611.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000146_pilon:110704..111705+ (Gracilaria gracilis GNS1m male)
ATGACCTTATTGTGTCTTCGTCGCTTTTTCTACTTTTCCACACTGCTCTC
CTTCTTTATCGCCGCCACCATTCCCCATGCGTACGCGAAAAGCTGCTGCG
AGCTTACCGAGCAGCAGCTGCAAGCCATGCGCGGTCGCAGCGACTCCTGC
CCTTCCTCATCTAGGATGGCAACGCTCACCAAATGTATGGAGTGTCCGCC
GAACACCTGTCGGGTAGGATTGCTATGCTACTGTCCGGGTGCATTTCTTT
CGACTCCGTCACGGCAACGAGATTGTGAAGACAGCTTTCTCAGCGTGTGG
CCCCAATCCATCGGTAAAGAAGACCGATTTTGGAGGAGTTGTGCGCCAAA
CTTTGAGCCGCCTGAGGGATCGACTACGTCATGTTGCGATATGACTGAAG
ATCAACTGGAAGCCATGGTTGGTACATCCGACATCTGCCCCTCGAGCGGC
AGTTCTTCTCGTCAACGACAGTGTGCAGATTCGTTTGGAGAACCGTGGCC
GAAATCCATCGGAATGGAAGACATGGACTGGCGTAGCTGCAACAATAGCG
CGCAACCTGTTTCGGTTGGTGGCACAACCACAGATGAAGGCACCACCACA
GACGGGGGTACCTCTGGAGTAGGAGATTCGGGGGATAATCAAGGTTCTTC
TGTAGGTGGCTCTACTTCTGGGGAATCGACGTCCAACACTGCTACGGCCA
CTTCAAGCGGATCCAAAACAGAGACGACAGTCAATGTTGATGGATCGAGC
TCGCAGAATTCAGGAGTGCAGGAGGAAAACTCACTGACGACGTTGGAAAT
TGTTGGCATCGTCGCAGGTGTAGTGAGCGCGGTTGTCACTGTAATTGGTT
CGATAGCTGCGCTCAAGAAACGAAAGCAAAAAGACAAACACAAGATCGTT
GGTGCATGA
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